ID   FN179152; SV 1; linear; genomic RNA; STD; VRL; 1826 BP.
XX
AC   FN179152;
XX
DT   25-FEB-2009 (Rel. 99, Created)
DT   25-FEB-2009 (Rel. 99, Last updated, Version 1)
XX
DE   Plum pox virus partial gene for polyprotein and 3'UTR, genomic RNA, strain
DE   D, isolate PPV-Soskut1
XX
KW   .
XX
OS   Plum pox virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1826
RA   Palkovics L.;
RT   ;
RL   Submitted (25-FEB-2009) to the INSDC.
RL   Palkovics L., Plant Pathology, Corvinus University of Budapest, Menesi Road
RL   44., H-1118, HUNGARY.
XX
RN   [2]
RA   Szathmary E., Palkovics L.;
RT   "Natural deletion is not unique in the coat protein (CP) of recombinant
RT   Plum pox virus (PPV) isolates in Hungary";
RL   Unpublished.
XX
DR   MD5; b0bdfb33121d36feb0e70c1d024ab741.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1826
FT                   /organism="Plum pox virus"
FT                   /host="Prunus armeniaca cv. Bergeron"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /strain="D"
FT                   /isolate="PPV-Soskut1"
FT                   /mol_type="genomic RNA"
FT                   /country="Hungary:Soskut"
FT                   /collection_date="2008"
FT                   /identified_by="Erzsebet Szathmary"
FT                   /clone="B631.2.2"
FT                   /PCR_primers="fwd_name: Poty7941, fwd_seq:
FT                   ggaattcccgcggnaayaayagyggncarcc, rev_name: PolyT2, rev_seq:
FT                   cggggatcctcgagaagcttttttttttttttttt"
FT                   /db_xref="taxon:12211"
FT   CDS             <1..1609
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C0MP66"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:C0MP66"
FT                   /protein_id="CAX51129.1"
FT                   /translation="STVVDNTLMVILAMTYSLLKLGYHPDTHDCICRYFVNGDDLVLAV
FT                   HPAYESIYDELQEHFSQLGLNYTFATKTENKEELWFMSHKGVLYDGMYIPKLEPERIVS
FT                   ILEWDRSNEPIHRLEAICASMVEAWGYKELLREIRKFYSWVLEQAPYNALSKDGKAPYI
FT                   AETALKKLYTDTEASETEIERYLEAFYNDINDDGESNVVVHQADEREDEEEVDAGKPIV
FT                   VTAPAATSPILQPPPVIQPAPRATAPMFNPIFTPATTQPATTPVSRVSGPQLQTFGTHG
FT                   NEDASPSNSNALVTTNRDRDVDAGSIGTFTVPRLKAMTSKLSLPKVKGKAIMNLNHLAH
FT                   YSPAQVDLSNTRAPQSCFQTWYEGVKRDYDVTDDEMSIILNGLMVWCIENGTSPNINGM
FT                   WVMMDGETQVEYPIKPLLDHAKPTFRQIMAHFSNVAEAYIEKRNYEKAYMPRYGIQRNL
FT                   TDYSLARYAFDFYEMTSTTPVRAREAHIQMKAAALRNVQNRLFGLDGNVGTQEEDTERH
FT                   TAGDVNRNMHNLLGVRGV"
FT   mat_peptide     <1..616
FT                   /product="nuclear inclusion protein, NIb"
FT   mat_peptide     617..1606
FT                   /product="coat protein, CP"
FT   3'UTR           1610..1826
XX
SQ   Sequence 1826 BP; 540 A; 395 C; 429 G; 462 T; 0 other;
     ttcgacagtt gttgacaata cactcatggt tattttggca atgacatatt cactccttaa        60
     gcttggatac catccggata cacacgattg catttgtcgg tacttcgtga atggtgatga       120
     tcttgtcctt gcagtgcacc cagcatacga gagcatttac gatgagcttc aagaacactt       180
     ttcccaactt ggattgaatt acacattcgc cacaaagact gaaaacaagg aagagctgtg       240
     gtttatgtca cataaaggtg ttctctacga tggcatgtac attcccaagc tggagcccga       300
     gaggattgta tcaatacttg aatgggacag atcaaatgag ccaattcatc gattggaggc       360
     aatttgtgct tcaatggtgg aagcgtgggg ttataaggag ctgttgaggg agatccggaa       420
     attttacagt tgggttcttg aacaagcacc atacaatgct ctttcaaaag atggaaaagc       480
     cccgtacatt gcggagacag cactgaagaa gctttacact gacactgaag cgtccgagac       540
     agaaattgag cgatatcttg aagcttttta caacgacatt aacgatgatg gtgagtccaa       600
     cgttgttgtg caccaagcgg acgaaagaga agacgaggag gaagttgacg caggcaagcc       660
     gattgtagtt actgcaccgg cagcaactag cccaatactt caaccacccc cagtcataca       720
     gcctgcacct cgggctacgg cgccaatgtt caaccccatt ttcacgccag caacaactca       780
     accagcaaca acaccagttt cacgggtgtc aggacctcaa ctgcaaactt ttggaacaca       840
     tggtaatgag gatgcctcac ctagcaactc aaacgcgcta gtcaccacaa acagagacag       900
     ggacgttgat gcaggatcaa ttggaacttt cacagtgcca cgtttgaagg caatgacttc       960
     gaaactatct ctgccaaagg tgaagggaaa ggccatcatg aacttgaacc atttggcaca      1020
     ttatagtcct gcacaggttg acttgtcaaa cacgagagct ccgcagtctt gtttccaaac      1080
     ttggtatgaa ggagttaagc gagattatga tgtcacggac gatgaaatga gcatcatttt      1140
     aaatggtctt atggtttggt gcatagagaa tggaacatcc ccgaatatca atggaatgtg      1200
     ggtgatgatg gatggggaaa cacaagtgga gtatccaata aagccattgt tggatcatgc      1260
     gaaacccact tttagacaaa ttatggcaca tttcagtaac gtggctgaag cgtatattga      1320
     aaaacgaaat tatgaaaaag catacatgcc aaggtatgga attcagcgca acctgacaga      1380
     ctacagcctc gccagatatg cctttgattt ttacgaaatg acttcaacga cacccgtacg      1440
     ggcacgtgaa gctcatatcc agatgaaggc agcagcattg agaaatgttc aaaatcgttt      1500
     atttggcttg gatggaaacg tcggaacaca agaagaggac acagagagac acaccgctgg      1560
     tgatgttaat cgcaacatgc acaacctcct cggtgtgagg ggagtgtagt ggtctcggta      1620
     tctatcataa actctacctg ggtgagagtc tagtcatcca gttgttttta gattcctgtt      1680
     agcatccttt tctccgcttt aatagcagta cattcagtga ggttttacct ccatatgttc      1740
     tagtctgtta ttgtcgaaca caggcccttg tatctgatgt agcgagtgct tcactccatt      1800
     cgggttatag ttcttgtgca agagcc                                           1826
//