ID   FM997909; SV 1; linear; genomic RNA; STD; VRL; 1868 BP.
XX
AC   FM997909;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN22
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1868
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; f1abc3f76e38b7e8a774d6e240f85960.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1868
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum hybrid cv. Guitang 11"
FT                   /isolate="YN22"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Yunxian"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1632
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C773"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C773"
FT                   /protein_id="CAX36858.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEEDMIDEICKMYANG
FT                   DDLLLAVRPDYEFLLDDFSKHFSNLGLNFDFTSRTRDKTELWFMSTRGVKVDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGIKEEEINVYYTQFLKDLPEYVEDELIDVRHQAGGATVDA
FT                   GAAAAEATAQAQRDAAAKAQRDADAKKRADDEAAEKQRQDAAAKKKADDDAKAKADADA
FT                   KAKADAEAKKKADDEAAKRTQNQKDKDVDAGTSGTVAVPKLKAMSKKMRLPQAKGKNIL
FT                   HLDFLLGYKPQQQDISNTRSTRDEFDRWYDALQKEYELDDTQMTVVASGLMVWAIENGC
FT                   SPNINGVWTMMDGDEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERYMPR
FT                   YGLQRNLTDYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNVGES
FT                   QENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1629
FT                   /product="Coat protein"
FT   3'UTR           1633..1868
XX
SQ   Sequence 1868 BP; 611 A; 347 C; 458 G; 452 T; 0 other;
     gggaacaaca gcggacaacc atcaaccgtc gttgacaaca cactaatggt gataatagca        60
     ttcaattaca caatgttatc gtgtggaata gaagaggaca tgatcgatga aatatgcaaa       120
     atgtatgcga atggagatga tttgttgtta gcggttcggc cagattatga gtttctgcta       180
     gatgactttt caaaacactt ttcaaatctc ggactaaatt ttgatttcac atcacgaacc       240
     agagacaaga cagaattgtg gttcatgtca acaagaggtg taaaagtgga tggaatgtat       300
     attccaaagt tggagcaaga gagaatagtc gcaatccttg aatgggatag atcactgtta       360
     ccacagtaca ggttagaagc tatttgtgca gccatggtag aggcatgggg ttatccgcaa       420
     ctcttacatg agattaggaa attttatgct tggattctcg aaatgcaacc ctttgccact       480
     ttagccaaag aaggccttgc cccatacata gcggaaacag ctctgcgtaa tctttatact       540
     ggagcgggca ttaaagaaga ggaaataaat gtgtattaca cgcaatttct taaggactta       600
     cctgaatatg ttgaagatga attaattgac gtgcgtcacc aagcaggggg tgctacagtg       660
     gatgcaggag cagctgcagc tgaggcaaca gcacaagcac agcgggatgc agcagcaaaa       720
     gctcagcggg atgctgatgc aaagaaaagg gctgacgatg aagcagcaga aaagcaaaga       780
     caggatgctg ctgcgaagaa gaaagcggat gacgatgcca aggccaaagc tgatgctgat       840
     gctaaggcta aagctgatgc tgaagctaaa aagaaagcag atgatgaagc agcaaagaga       900
     acacaaaacc agaaggataa ggatgttgac gctggaacat caggcacagt ggcagtgcca       960
     aagctcaaag ctatgtctaa gaaaatgaga ttaccacaag ctaaaggaaa gaacatttta      1020
     catttagact tcctattggg ttataagcca cagcaacaag atatttcgaa cacaagatca      1080
     actagagatg aattcgacag atggtacgat gcattacaga aagaatatga gctggatgac      1140
     acacagatga cagtcgttgc aagtgggctc atggtttggg ctatcgaaaa tggatgttcg      1200
     cctaatatta atggtgtttg gacgatgatg gatggagatg agcaaaggaa atttcctttg      1260
     aaacctgtca tagaatatgc ttctccaacg tttagacaga taatgcacca ctttagtgat      1320
     gcagctgaag cgtacattga gtatagaaac tcaacggaac gttatatgcc aagatacgga      1380
     cttcagcgaa acttaaccga ctataaccta gcacgatacg catttgattt ttatgaaata      1440
     acatcgcgta caccagcaag agctagagag gcccacatgc agatgaaagc agcagcagtg      1500
     cgtggttcaa acacgcgcat gtttggcttg gatgggaatg tcggggaaag tcaggagaat      1560
     acagaacgtc atacagctgg cgacgtgagt cgcaacatgc actccctcct tggagtgcaa      1620
     cagcatcact gatgtgctga gatcttcatt gcagtatttt aagtatttta tatatttact      1680
     atctcagtga gggtctccct ccttagtatt atatatgtac tttagaaatg gtagtcaatc      1740
     tgcaggggaa tgaggtgtta cctctaactc tttgattact atttcctact agcgtcgaac      1800
     tacattacgg acaccctgtt gtgtggttct accacgagtc aggagctgcg agtattgtag      1860
     caagagac                                                               1868
//