ID   FM997906; SV 1; linear; genomic RNA; STD; VRL; 1840 BP.
XX
AC   FM997906;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN19
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1840
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 32c6b0305ebcd7acad0bb581f8ca7a2f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1840
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum hybrid cv. Xintaitang 26"
FT                   /isolate="YN19"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Shuangjiang"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1608
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C770"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C770"
FT                   /protein_id="CAX36855.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEADMIDEICKMYANG
FT                   DDLLLAIRPDYEHLLDNFSKHFSDLGLNFDFTSRTRDRTELWFMSTRGIKIDNMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGEGIKEGELDVYYTQFLKDLPEYIEDELIDVRHQAGGGTVDA
FT                   GAAATDATAQAQRDAAAKAQRDAEAAEKQRQDAAAKKKADDDAKAKADADAKAKSDADA
FT                   KKKADDEAASKAQNQKDKDVDAGTSGTVAVPKLKAMSKKMKLPQAKGKNILHLDFLLGY
FT                   KPQQQDISNTRATRDEFDRWYDALQKEYELDDTQMTVVASGLMVWVIENGCSPNINGVW
FT                   TMMDGDEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLT
FT                   DYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHT
FT                   AGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1605
FT                   /product="Coat protein"
FT   3'UTR           1609..1840
XX
SQ   Sequence 1840 BP; 605 A; 345 C; 449 G; 441 T; 0 other;
     gggaataata gtgggcagcc gtcaactgtt gttgataaca cattaatggt gattatagcg        60
     tttaactata cgatgttgtc atgtggaatt gaagcagata tgatagatga aatatgcaaa       120
     atgtatgcaa acggggatga tcttttgttg gcaatacgac ctgattatga acatttattg       180
     gataattttt caaaacactt ttctgatcta ggtcttaact tcgattttac atcacgcaca       240
     agagatagaa cggagttgtg gtttatgtca acacgaggca ttaaaattga caatatgtac       300
     atcccaaaat tggaacagga aagaattgtc gccattttag aatgggatag atcattatta       360
     ccacaatata gactagaggc gatatgtgct gcaatggtgg aagcatgggg atatccacag       420
     ttattacatg agattaggaa attctacgct tggattcttg aaatgcagcc attcgctact       480
     ctagcgaaag aaggacttgc cccgtacata gcagaaacgg ctttgcgcaa tctttataca       540
     ggggaaggaa taaaagaagg ggaattagat gtttactaca cacaatttct caaagacttg       600
     ccggaataca tagaggatga attaattgac gtgcggcatc aggcaggagg cggtacagta       660
     gatgcaggag cagccgcaac agatgcaaca gcacaagcac agcgtgatgc agcagcgaaa       720
     gcccaacgag acgcagaagc ggcagagaag cagagacaag atgctgcagc taagaagaaa       780
     gctgatgatg atgcgaaagc taaagctgac gcggatgcca aagcaaaatc agatgctgac       840
     gcgaagaaga aagcagacga tgaagcagca agtaaagcac aaaatcaaaa agataaggat       900
     gtggatgccg gcacatccgg cacagtggca gtgcctaaac tcaaagcaat gtccaagaaa       960
     atgaagctac cacaagcaaa agggaaaaac attttacact tggattttct tttgggatat      1020
     aagccacaac aacaagacat ttcaaacacc agagctacac gggatgagtt cgataggtgg      1080
     tacgatgcat tgcagaaaga atatgaacta gatgacacgc agatgacagt ggttgcaagc      1140
     ggactcatgg tttgggtcat agagaacgga tgctcaccta atattaatgg tgtttggaca      1200
     atgatggatg gagatgagca aaggaaattt ccactcaagc ccgttattga gtatgcatct      1260
     ccaacattta gacagataat gcaccacttt agtgatgcag ctgaagcgta tatagagtat      1320
     agaaactcga cagagcgtta catgccaaga tacggacttc agcgaaactt aaccgactat      1380
     aacctagccc ggtatgcatt tgatttctat gaaataactt cgcgtacacc ggcgagagct      1440
     agagaggccc acatgcagat gaaagcagca gcagtgcgtg gttcaaacac gcgcatgttt      1500
     ggcttggatg ggaatgtcgg cgagagtcag gagaatacag aacgtcacac agctggcgat      1560
     gtgagtcgca atatgcactc ccttcttgga gtgcagcagc accattgatg tactgagatc      1620
     ttcattgcag tatcaagtat ttatatattt actatttcag tgagggtctc cctccttagt      1680
     attatatacg taccttagaa atagtagtca ttctgcagag gagtgaggtt tacctccaac      1740
     tctatggtta ctatttccta ctagcgtcga actacattac ggacaccctg ttgtgtggtt      1800
     ctaccatgag tcaggagctg cgagtattgt agcaagagac                            1840
//