ID   FM997905; SV 1; linear; genomic RNA; STD; VRL; 1846 BP.
XX
AC   FM997905;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN18
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1846
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 669154fa415e85c90e254eed39353917.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1846
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum hybrid cv. Xintaitang 22"
FT                   /isolate="YN18"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Shuangjiang"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1608
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C769"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C769"
FT                   /protein_id="CAX36854.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEVDMIDEICKMYANG
FT                   DDLLLAIRPDYEHLLDDFSKHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGIREGELDVYYTQFIKDLPEYVEDELIDVFHQAGGDTVDA
FT                   GANTADATAQAQREAAAKAQQDAAAKKRADDEAAEKQRQDAAAKKKAGDDAKAKADADA
FT                   KKKADDEAAQRAQNQKDKDVDVGTSGTVTVPKLKAMSKKMRLPQAKGKNILHLDFLLGY
FT                   KPQQQDISNTRATRAEFDRWYAAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVW
FT                   TMMDGEEQRTFPLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRCGLQRNLT
FT                   DYNLARYAFDFYEITSRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHT
FT                   AGDVSRNMHTLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1605
FT                   /product="Coat protein"
FT   3'UTR           1609..1846
XX
SQ   Sequence 1846 BP; 610 A; 355 C; 438 G; 443 T; 0 other;
     gggaacaata gtgggcaacc atctactgtt gttgacaaca cattaatggt gatcatagct        60
     tttaattaca cgatgctatc ttgcgggatt gaagtagata tgatagacga gatatgcaaa       120
     atgtatgcaa atggagatga tctcctacta gccattcgac cagattacga acacctgttg       180
     gatgatttct ctaaacactt ctctgatcta ggattaaact ttgatttcac atcacgaact       240
     agagatagag aagaactatg gttcatgtca acacgaggca tcaaaatcga tggaatgtat       300
     atcccaaaat tggagcagga aagaatagtt gctatattag agtgggacag atcattactg       360
     cctcaatata gattagaagc gatatgtgct gctatggtgg aagcttgggg gtatccacaa       420
     ttattacatg agattagaaa attttatgcc tggattctcg aaatgcaacc atttgctaca       480
     ctggcaaaag aaggactcgc tccatacata gcagaaacag ctctacgcaa tctttacaca       540
     ggagcaggaa tcagagaagg ggaattggat gtttattata cacaatttat caaagattta       600
     ccggagtatg tggaagatga gttaattgat gtgtttcatc aagcaggggg tgacacggtg       660
     gatgcgggag ctaacacagc agatgcaacg gcacaagcac aacgagaggc tgcagcaaaa       720
     gcccaacagg atgccgctgc gaaaaagaga gcagatgatg aagcagcaga gaaacagaga       780
     caagatgctg ctgcaaagaa gaaagctggc gatgatgcta aagcaaaagc ggatgctgat       840
     gcgaaaaaga aagcagatga cgaagcagcg cagagagcac aaaatcagaa agataaagac       900
     gttgatgttg gaacgtcagg cacagtcaca gtaccaaaac tcaaagctat gtccaagaag       960
     atgcgtttgc cacaagcaaa aggaaagaat attttacatc tcgatttcct acttggatac      1020
     aagccacaac agcaagacat ctcaaacaca cgagcaacac gagcagagtt tgataggtgg      1080
     tatgcagccg tacaaaaaga atatgaactt gatgacacac aaatgacagt tgtcatgagt      1140
     ggactaatgg tatggtgtat agaaaatggt tgctcaccga atatcaatgg tgtttggacc      1200
     atgatggatg gagaagaaca aagaacattt cctttaaagc caataattga aaatgcttct      1260
     ccaacattta ggcagattat gcatcacttt agtgatgcag ctgaagcgta tatagaatat      1320
     cgtaactcaa cggaacgcta catgccaaga tgcggacttc agcgaaactt gaccgactac      1380
     aatttagcac gttatgcttt tgatttctat gagatcacat cacgtacaac agcccgtgct      1440
     aaggaggccc acatgcagat gaaagctgca gcagttcgtg gttcaaatac ccggatgttc      1500
     ggcttggatg ggaatgtcgg cgagtctcag gagaatactg aacgtcacac tgctggcgac      1560
     gtgagtcgta acatgcacac ccttcttggg gtgcaacagc accactgacg tgacggaaac      1620
     cctgtttgca gtacctaagt attatatata tatcctatgt gagtgaggcc atgcctcgtt      1680
     agtataatat atatttactt tcaaagtatt tactatttct gcaagggagt gaggacgcat      1740
     cctccaacct tttagtacgt actttactag cttcgaacca ctagacggac aatctgttgt      1800
     gtggccgtgc tacgatgcag gtgctgcgag tcttgtggca agagac                     1846
//