ID   FM997904; SV 1; linear; genomic RNA; STD; VRL; 1845 BP.
XX
AC   FM997904;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN17
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1845
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 2a81d721c9d6f715c7411322b062636f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1845
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN17"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Shuangjiang"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1608
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C768"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C768"
FT                   /protein_id="CAX36853.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEVDMIDEICKMYANG
FT                   DDLLLAIRPDYEHLLDDFSKHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGIREGELDVYYTQFIKDLPEYVEDELIDVFHQAGGDTVDA
FT                   GAATADATARAQREAAAKTQQDAAAKKRADDEAAEKQRQDAAAKKKADDDAKAKADADA
FT                   KKKADDETAQRAQNQKDKDVDAGTSGTVTVPKLKAMSKKMRLPQAKGKNILHLDFLLGY
FT                   KPQQQDISNTRATRAEFDRWYAAVQKEYELDDTQMTVVMGGLMVWCIENGCSPNINGVW
FT                   TMMDGEEQRTFPLKPIIENASPTFRQIMHHFSNAAEAYIEYRNSTERYMPRYGLQRNLT
FT                   DYNLARYAFDFYEITSRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHT
FT                   AGDVSRNMHTLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1605
FT                   /product="Coat protein"
FT   3'UTR           1609..1845
XX
SQ   Sequence 1845 BP; 607 A; 357 C; 440 G; 441 T; 0 other;
     gggaacaata gcgggcaacc atctactgtt gttgacaaca cattaatggt gatcatagct        60
     tttaattaca cgatgctatc ttgcgggatt gaagtagata tgatagacga gatatgcaaa       120
     atgtatgcaa atggagatga tctcctacta gccattcgac cagattacga acacctgttg       180
     gatgatttct ctaaacactt ctctgatcta ggattaaact ttgatttcac atcacgaact       240
     agagatagag aagaactatg gttcatgtca acacgaggca tcaaaatcga tggaatgtat       300
     atcccaaaat tggagcagga aagaatagtt gctatattag agtgggacag atcattactg       360
     cctcaatata gattagaagc gatatgtgct gctatggtgg aagcttgggg gtatccacaa       420
     ttattacatg agattagaaa attttatgcc tggattctcg aaatgcaacc atttgctaca       480
     ctggcaaaag aaggactcgc tccatacata gcagaaacag ctctacgcaa tctttacaca       540
     ggagcaggaa tcagagaagg ggaattggat gtttattata cacaatttat caaagattta       600
     ccggagtatg tggaagatga gttaattgat gtgtttcatc aagcaggggg tgacacggtg       660
     gatgcgggag ctgctacagc agatgcaacg gcacgagcac agcgagaagc tgcagcaaaa       720
     actcaacagg atgccgctgc gaaaaagaga gcagatgatg aagcggcaga gaaacagaga       780
     caagatgctg ctgcgaaaaa gaaagctgat gatgatgcta aagcaaaagc agatgctgat       840
     gcgaaaaaga aagcagatga cgagacagca caaagagcac aaaatcaaaa agataaagac       900
     gttgatgctg gaacgtcagg cacagtcaca gtaccaaaac tcaaagctat gtccaagaag       960
     atgcgcttgc cacaagcgaa aggaaagaac attttacatc ttgattttct acttggatat      1020
     aagccacagc aacaagacat atcgaacaca cgagcaacac gagcagagtt tgatagatgg      1080
     tatgcagccg tacagaaaga atacgagctt gatgacacac aaatgacagt tgtcatgggt      1140
     ggattaatgg tatggtgcat agaaaatggt tgctcaccga acatcaatgg tgtttggacc      1200
     atgatggatg gagaagaaca aagaacattt cctttaaagc caataattga aaatgcttct      1260
     ccaactttta ggcagatcat gcatcacttt agcaatgcag ctgaagcgta tatagaatac      1320
     cgtaactcaa cggaacgcta catgccaaga tacggacttc agcgaaactt gaccgactac      1380
     aatttagcac gttatgcttt tgatttctac gagatcacat cacgtacaac tgcccgtgct      1440
     aaggaggccc acatgcagat gaaagccgca gcagttcgtg gttcaaacac ccggatgttc      1500
     ggcttagatg ggaatgtcgg cgagtctcag gagaatactg agcgtcacac tgctggcgat      1560
     gtgagtcgta acatgcacac ccttcttggg gtgcaacagc accattgacg tgacggaaac      1620
     cctgtttgca gtacctaagt attatatgta ttgtctatgt aagtgaggct atgcctcgtt      1680
     agtataatat atatttactt tcaaagtatt tgctattctg caagggagtg aggacgcatc      1740
     ctccaacctt atagtacgta ctttactagc ttcgaaccac tagacggaca atctgttgtg      1800
     tggccgtgct acgatgcagg tgctgcgagt cttgtggcga gagac                      1845
//