ID   FM997903; SV 1; linear; genomic RNA; STD; VRL; 1845 BP.
XX
AC   FM997903;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN16
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1845
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; db4f33831c73682651e458242ffc5cbe.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1845
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum hybrid cv. Xuan 3"
FT                   /isolate="YN16"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Menglian"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1608
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C767"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C767"
FT                   /protein_id="CAX36852.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEADMIDEICKMYANG
FT                   DDLLLAIRPDYECLLDNFSRHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLYEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGIKEGELDIYYTQFIKDLPEYVEDELIDVFHQAGGGTVDA
FT                   GANTADATARAQQEAAAKAQQDADAKKRADDEAAEKQRQDAAAKKKADDDAKAKADADA
FT                   KKKAGDEAAQRAQNQKDKDVDAGTSGTVTVPKLKAMSKKMRLPQAKGKNILHLDFLLGY
FT                   KPQQQDISNTRATRDEFDRWYAAVQKEYEVDDTQMTVIMSGLMVWCIENGCSPNINGVW
FT                   TMMDGEEQRKFPLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLT
FT                   DYNLARYAFDFYEITSRTPARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESRENTERHT
FT                   AGDVSRNMHTLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1605
FT                   /product="Coat protein"
FT   3'UTR           1609..1845
XX
SQ   Sequence 1845 BP; 612 A; 353 C; 435 G; 445 T; 0 other;
     gggaataata gtgggcagcc atctaccgtt gttgacaaca cattaatggt gatcatagct        60
     ttcaattaca cgatgctatc ttgcggaatt gaagcagata tgatagatga gatatgcaaa       120
     atgtatgcga atggagacga tctcttatta gccatccgac cagattacga atgcctgctg       180
     gataacttct ctagacactt ctctgatcta ggattaaact ttgatttcac atcacgaact       240
     agagatagag aagaattatg gtttatgtca acacgaggca tcaaaatcga cggaatgtac       300
     atcccaaaat tggagcagga aagaatagtt gctatattag agtgggacag atcattgttg       360
     cctcaatata gattagaagc aatatgtgct gctatggtgg aagcttgggg atatccacaa       420
     ttattatatg agattagaaa attttacgcc tggattctcg aaatgcaacc atttgcaaca       480
     ctggcaaagg aaggactcgc accatacata gcagaaacag ctttacgcaa tctttacaca       540
     ggagcaggaa tcaaagaagg ggagttggat atttattata cacaatttat caaggattta       600
     cctgagtatg tggaagatga gttgattgat gtgtttcatc aagcaggagg cggcacagtg       660
     gatgcgggag ctaacacagc agatgcaaca gcacgagcgc aacaagaagc tgcagcaaaa       720
     gctcagcagg atgctgatgc gaaaaagagg gcagacgatg aagcagcaga gaaacagaga       780
     caagatgctg ctgcaaagaa gaaagctgac gacgatgcca aagcaaaagc agatgctgat       840
     gcgaaaaaga aagcaggtga tgaagcagcg caaagagcac aaaatcagaa agacaaagac       900
     gttgatgctg gaacgtcagg aacagtcaca gtaccaaagc ttaaagctat gtccaagaag       960
     atgcgcttgc cacaagcgaa aggaaagaac atcttacatc ttgatttctt acttggatat      1020
     aaaccacagc aacaagacat ttcaaacaca cgagcaacac gagatgagtt tgatagatgg      1080
     tatgcagccg tacaaaagga atacgaagtc gatgacacac aaatgacagt tatcatgagt      1140
     ggacttatgg tatggtgcat agagaatggt tgctcaccga acatcaatgg tgtttggacc      1200
     atgatggatg gagaagaaca aaggaaattt cctttaaagc caataattga aaatgcttct      1260
     ccaactttta gacaaataat gcaccacttt agtgatgcag ctgaagcgta tatagaatac      1320
     cgtaattcga cggaacgata catgccaaga tacggacttc agcgaaactt gaccgactac      1380
     aatttagcac gatatgcttt tgatttctat gaaattacat cacgcacacc tgctcgtgct      1440
     aaggaggccc acatgcagat gaaagccgca gcagttcgtg gttcaaacac ccgaatgttc      1500
     ggcttggacg gtaatgtcgg cgagtctcgg gagaatactg aacgtcatac tgctggcgac      1560
     gtgagtcgta acatgcacac ccttcttggg gtgcaacagc accattgacg tgacggaaac      1620
     cctgtttgca gtatctaagt attttatata ttttctatga aagtgaggct atgcctcgtt      1680
     agtataatat atatttactt ttcgagtatt tactattctg caagggagtg aggactcatc      1740
     ctccaacctt ttagtattta ctttactagc ttcgaaccac tagacggacg atctgttgtg      1800
     tggccgtgct acgatgcaga tgccgcgagt cttgtggcaa gagac                      1845
//