ID   FM997901; SV 1; linear; genomic RNA; STD; VRL; 1845 BP.
XX
AC   FM997901;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN14
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1845
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 5a49c457a8950712a3ccbc3c43d37791.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1845
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum hybrid cv. Yuetang 79/177"
FT                   /isolate="YN14"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Menghai"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1608
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C765"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C765"
FT                   /protein_id="CAX36850.1"
FT                   /translation="GNNSGQPPTVVDNTLMVIIAFNYTMLSCGIEADMIDEICKMYANG
FT                   DDLLLAIRPDYECLLDNFSRHFSDLGLNLDFTSRTRDREELWFMSTRGIKIDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGVKEGELDIYYTQFIKDLPEYVEDELIDVFHQAGGDTVDA
FT                   GANTADATARAQQEAAAKAQQDADAKKRADDEAAEKQRQDAAAKKKADDDAKAKADADA
FT                   KKKADDEAAQRAQNQKDKDVDAGTSGTVTVPKLKAMSKKMRLPQAKGKNILHLDFLLGY
FT                   KPQQQDISNTRATRDEFDRWYAAVQKEYEVDDTLMTVVMSGLMVWCIENGCSPNINGVW
FT                   TMMDGEEQRKFPLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLT
FT                   DYNLARYAFDFYEITSRTPARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHT
FT                   AGDVSRSMHTLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1605
FT                   /product="Coat protein"
FT   3'UTR           1609..1845
XX
SQ   Sequence 1845 BP; 607 A; 353 C; 438 G; 447 T; 0 other;
     gggaataata gtgggcagcc acctaccgtt gttgacaaca cattaatggt gatcatagct        60
     ttcaattaca cgatgctatc ttgcggaatt gaagcagata tgatagatga gatatgcaaa       120
     atgtatgcaa atggagacga tctcttatta gccattcgac cagattacga atgcctgctg       180
     gataactttt ctagacactt ctctgatcta ggattaaacc ttgatttcac atcacgaact       240
     agagatagag aagaattatg gtttatgtca acacgaggca tcaaaatcga cggaatgtac       300
     atcccaaaat tggagcagga aagaatagtt gctatattag agtgggacag atcattgttg       360
     cctcaatata gattagaagc aatatgtgct gctatggtgg aagcttgggg atatccacaa       420
     ttattacatg agattagaaa attttacgcc tggattctcg aaatgcaacc atttgccaca       480
     ctggcaaagg aaggactcgc accatacata gcagaaacag ctttacgcaa tctttacaca       540
     ggagcaggag tcaaagaagg ggagttggat atttattata cacaattcat caaggattta       600
     cctgagtatg tggaagatga gttgattgat gtgttccatc aagcaggggg cgacacagtg       660
     gatgcgggag ctaacacagc agatgcaaca gcacgagcgc aacaagaagc tgcagcaaaa       720
     gctcagcagg atgctgatgc gaaaaagagg gcagatgatg aagcagcaga gaaacagaga       780
     caagatgctg ctgcaaagaa gaaagctgat gacgatgcca aagcaaaagc agatgctgat       840
     gcgaaaaaga aagcagatga tgaagcagcg caaagagcac aaaatcagaa agataaagac       900
     gttgatgctg gaacgtcagg gacagtcaca gtaccaaagc ttaaagctat gtccaagaag       960
     atgcgcttgc cacaagcgaa aggaaagaac atcttacatc ttgatttctt acttggatat      1020
     aaaccacagc aacaagacat ttcaaacaca cgagcaacac gagatgagtt tgatagatgg      1080
     tatgcagccg tacaaaagga atacgaagtc gatgacacac taatgacagt tgtcatgagt      1140
     ggacttatgg tatggtgcat agagaatggt tgctcaccga acatcaatgg tgtttggacc      1200
     atgatggatg gagaagaaca aaggaaattt cctttaaagc caataattga aaatgcttct      1260
     ccaactttta gacaaataat gcaccacttt agtgatgcag ctgaagcgta tatagaatac      1320
     cgtaattcga cggaacgata catgccaaga tacggacttc agcgaaactt gaccgactac      1380
     aatttagcac ggtatgcttt tgatttctat gaaattacat cacgcacacc tgctcgtgct      1440
     aaggaggccc acatgcagat gaaagccgca gcagttcggg gttcaaacac ccgaatgttc      1500
     ggcttggacg gtaatgtcgg cgagtctcag gagaatactg aacgtcatac tgctggcgac      1560
     gtgagtcgta gcatgcacac ccttcttggg gtgcaacagc accattgacg tgacggaaac      1620
     cctgtttgca gtatctaagt attttatata ttttctatgt aagtgaggct atgcctcgtt      1680
     agtataatat atatttactt ttcgagtatt tactattctg caagggagtg aggactcatc      1740
     ctccaacctt ttagtattta ctttactagc ttcgaaccac tagacggacg atctgttgtg      1800
     tggccgtgct acgatgcaga tgctgcgagt cttgtggcaa gagac                      1845
//