ID   FM997898; SV 1; linear; genomic RNA; STD; VRL; 1840 BP.
XX
AC   FM997898;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN11
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1840
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 5672e9beffb670f0cf214df41df9a77e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1840
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum officinarum cv. Luohanzhe"
FT                   /isolate="YN11"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Hekou"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1608
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C762"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C762"
FT                   /protein_id="CAX36847.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEADMIDEICKMYANG
FT                   DDLLLAIRPDYEHLLDNFSKHFSDLGLNFDFTSRTRDRTELWFMSTRGIKIDNMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGEGIKEGELDVYYTQFLKDLPEYIEDELIDVRHQAGGGTVDA
FT                   GAAATDATAQAQRDAAAKAQRDAEAAEKQRQDAAAKKKADDDAKAKADADAKAKSDADA
FT                   KKKADDEAASKAQNQKDKDVDAGTSGTVAVPKLKAMSKKMKLPQAKGKNILHLDFLLGY
FT                   KPQQQDISNTRATRDEFDRWYDALQKEYELDDTQMTVVASGLMVWVIENGCSPNINGVW
FT                   TMMDGDEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLT
FT                   DYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHT
FT                   AGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1605
FT                   /product="Coat protein"
FT   3'UTR           1609..1840
XX
SQ   Sequence 1840 BP; 608 A; 352 C; 443 G; 437 T; 0 other;
     gggaacaaca gtggtcagcc gtcaactgtt gtcgataaca cattaatggt gatcatagcg        60
     tttaactata cgatgttatc atgtggaatt gaagcagata tgatagatga aatatgcaaa       120
     atgtatgcaa acggggatga tcttttgttg gcaatacgac ctgattatga acatttattg       180
     gataattttt caaaacactt ttctgatcta ggtcttaact tcgattttac atcacgcaca       240
     agagatagaa cggagttgtg gttcatgtca acacgaggca ttaaaattga caatatgtac       300
     atcccaaaat tggaacagga aagaattgtc gccattttag aatgggatag atcactatta       360
     ccacaatata gactagaggc gatatgtgct gcaatggtgg aagcatgggg atatccacag       420
     ttattacatg agattaggaa attctacgct tggattcttg aaatgcagcc attcgctact       480
     ctagcgaaag aaggacttgc cccatacata gcagaaacgg ctttgcgcaa tctttataca       540
     ggggaaggaa taaaagaagg ggaattagat gtttactaca cacaatttct caaagacttg       600
     cctgaataca tagaagatga attaattgac gtgcggcatc aggcaggagg cggtacagta       660
     gatgcaggag cagccgcaac agatgcaaca gcacaagcac agcgtgatgc agcagcgaaa       720
     gctcaacgag acgcagaagc ggcagagaag cagagacaag atgctgcagc taagaagaaa       780
     gctgatgatg atgcgaaagc taaagctgac gcggatgcca aagcaaaatc agatgctgac       840
     gcgaaaaaga aagcagacga tgaagcagca agtaaagcac aaaatcaaaa agataaggat       900
     gtggatgccg gcacatctgg cacagtggca gtgcctaaac tcaaagcaat gtccaagaaa       960
     atgaagctac cacaagcaaa agggaaaaac attttacact tagattttct tttgggatat      1020
     aagccgcaac aacaagacat ttcaaacacc agagctacac gggatgagtt cgataggtgg      1080
     tacgatgcat tgcagaaaga atatgaacta gatgacacgc agatgacagt ggtcgcaagc      1140
     ggactcatgg tttgggtcat agagaacgga tgctcaccta atattaatgg tgtttggaca      1200
     atgatggatg gagatgagca aaggaaattt ccactcaagc ccgttattga gtatgcatct      1260
     ccaacattta gacagataat gcaccacttt agtgatgcag ctgaagcgta tatagagtat      1320
     agaaactcga cagagcgtta catgccaaga tacggacttc agcgaaactt aaccgactat      1380
     aacctagccc ggtatgcatt tgatttctat gaaataactt cgcgtacacc ggcgagagct      1440
     agagaggccc acatgcagat gaaagcagca gcagtgcgtg gctcaaacac gcgcatgttt      1500
     ggcttggatg ggaatgtcgg cgagagtcag gagaatacag aacgtcacac agctggcgat      1560
     gtgagtcgca atatgcactc ccttcttgga gtgcagcagc accactgatg tactgagatc      1620
     ttcattgcag tatcaagtat ttatatattt actatttcag tgagggtctc cctccttagt      1680
     attatatacg tactttagaa atagtagtca ttctgcagag gagtgaggct tacctccaac      1740
     tctatggtta ctatttccta ctagcgtcga actacattac ggacaccctg ttgtgtggtt      1800
     ctaccatgag tcaggagttg cgagtattgt agcaagcgac                            1840
//