ID   FM997897; SV 1; linear; genomic RNA; STD; VRL; 1867 BP.
XX
AC   FM997897;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sorghum mosaic virus partial polyprotein gene, genomic RNA, isolate YN10
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1867
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 4ecf89b2c2a709b2adfd0bc50b1a062f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1867
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN10"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Binchuan"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1632
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C761"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C761"
FT                   /protein_id="CAX36846.1"
FT                   /translation="GNNSGQPSTVVDNTLMVIIAFNYTMLSCGIEEDMIDEICKMYANG
FT                   DDLLLVVRPDYEFLLDDFSKHFSNLGLNFDFTSRTRDKTELWFMSTRGIKVDGMYIPKL
FT                   EQERIVAILEWDRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAK
FT                   EGLAPYIAETALRNLYTGAGIKEEEINVYYTQFLKDLPEYVEDELIDVRHQAGGATVDA
FT                   GAAAAEATAQAQRDAAAKAQRDADAKKKADDEAAEKQRQDATAKKKADDDAKAKADADA
FT                   KAKADAEAKKKADDEAAKKTQNQKDRDVDAGTSGTVAVPKLKAMSKKMRLPQAKGKNIL
FT                   HLDFLLGYKPQQQDISNTRSTRDEFDRWYDALQKEYELDDTQMTVVASGLMVWAIENGC
FT                   SPNINGVWTMMDGEEQRKFPLKPVIEYASPTFRQIMHHFSDAAEAYIEYRNSTERYMPR
FT                   YGLQRNLTDYNLARYAFDFYEITSRTPARAREAHMQMKAAAVRGSNTRMFGLDGNVGES
FT                   QENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1629
FT                   /product="Coat protein"
FT   3'UTR           1633..1867
XX
SQ   Sequence 1867 BP; 611 A; 347 C; 456 G; 453 T; 0 other;
     ggaaataaca gcggacaacc atcaaccgtt gttgacaaca cactaatggt gataatagca        60
     ttcaattaca caatgttgtc gtgtggaata gaagaggaca tgatcgatga aatatgcaaa       120
     atgtatgcga atggagacga tttattgtta gtggttcggc cagattatga gtttctgcta       180
     gatgactttt caaaacactt ttcaaatctt ggactaaatt ttgattttac atcacgaacc       240
     agagacaaga cagaattgtg gttcatgtca acaagaggta tcaaagtgga tggaatgtat       300
     attccaaagt tggagcaaga gaggatagtc gcaatacttg aatgggatag atcgctgtta       360
     ccacagtaca ggttagaagc tatttgtgca gccatggtag aggcatgggg ttatccacaa       420
     ctcttacatg aaattaggaa gttttatgct tggattctcg aaatgcaacc ctttgccact       480
     ttagccaaag aaggccttgc cccatacata gcagaaacag ctctacgtaa tctttatact       540
     ggagcgggca ttaaagaaga ggaaataaat gtatattaca cgcaatttct taaggactta       600
     cctgaatatg ttgaagatga attaatcgat gtgcgtcacc aagcaggagg tgctacagtg       660
     gatgcaggag cagctgcagc tgaggcaact gcacaagcac agcgggatgc agcagcaaaa       720
     gctcagcgag atgctgatgc aaagaagaag gctgacgatg aagcagcaga aaagcaaaga       780
     caggatgcta ctgcgaagaa gaaagcggat gatgatgcca aggccaaagc tgatgccgat       840
     gccaaggcta aagctgatgc tgaagctaag aagaaagcag atgatgaggc agcaaagaaa       900
     acacaaaacc agaaggatag ggatgtcgat gctggaacat caggcacagt ggcagtgcca       960
     aagctcaaag ctatgtctaa gaaaatgaga ttaccacaag ctaaaggaaa gaacattttg      1020
     cacttagact tccttttagg ttacaagcca cagcaacagg atatttcgaa cacaagatca      1080
     actagggatg aattcgacag atggtacgat gcattgcaga aagaatatga gctggatgat      1140
     acacagatga cagtcgttgc aagcggactc atggtctggg ctatcgagaa tgggtgttcg      1200
     cctaatatta atggtgtttg gacaatgatg gatggagaag agcaaaggaa atttcctttg      1260
     aaacctgtca tagaatatgc ttctccaacg tttagacaga taatgcacca ctttagtgat      1320
     gcagctgaag cgtatattga gtatagaaac tcaacggaac gttatatgcc aagatatgga      1380
     cttcagcgaa acttaaccga ctataaccta gcacgatacg catttgattt ttatgaaata      1440
     acatcgcgta caccagcaag agctagagag gcccacatgc agatgaaagc agcagcagtg      1500
     cgtggttcaa acacgcgcat gtttggcttg gatgggaatg tcggggaaag tcaggagaat      1560
     acagaacgtc acacagctgg cgacgtgagt cgcaacatgc actctctcct tggggtgcag      1620
     cagcatcact gatgtgctga aatcttcact gcagtatttt aagtatttta tattttacta      1680
     tttcagtgag ggtttccctc cttagtatta tatatgtact ttagaaatgg tagtcaatct      1740
     gcaggggaat gaggtatcac ctctaaccct ttgattacta tttcctacta gcgtcgaact      1800
     acattacgga caccctgttg tgtggttcca ccacgagtca ggagctgcga gtattgtagc      1860
     aagagac                                                                1867
//