ID   FM997896; SV 1; linear; genomic RNA; STD; VRL; 1813 BP.
XX
AC   FM997896;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN9
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1813
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; cdbac3f4e2b0e89fe5274f23db8e779c.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1813
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Luohanzhe"
FT                   /isolate="YN9"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Yuanjiang"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1578
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C760"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C760"
FT                   /protein_id="CAX36845.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIQEDEIDNCCRMFANG
FT                   DDLLLAVHPDFEYILDGFQAHFSNLGLNFDFTSRTKEKSDLWFMSTRGIKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVVHQAGTADAGA
FT                   TGGNAPGSGGSPPASGVTTPPTSGTPPATGVTAPATGQPASGGNPPSAGAGVGAQADAN
FT                   SANTQKDKDVDAGTTGALSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDISNT
FT                   RATREEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRV
FT                   FPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFD
FT                   FYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHS
FT                   LLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1575
FT                   /product="Coat protein"
FT   3'UTR           1579..1813
XX
SQ   Sequence 1813 BP; 563 A; 367 C; 437 G; 446 T; 0 other;
     gggaacaaca gtgggcagcc atcaacagtt gtcgataata cattaatggt gatcttagct        60
     ttcaactatg ccatgttgtc aagtggaatt caagaagatg aaattgataa ttgttgtaga       120
     atgtttgcaa acggcgatga tttactctta gcagtgcacc ccgattttga gtacatctta       180
     gatggatttc aagctcattt cagtaacctc ggtttaaatt ttgattttac atctcgaaca       240
     aaggaaaaat ctgacctgtg gtttatgtca acgagaggaa taaaatgcga aaacatttat       300
     atacctaaac tcgagaagga gcgcatagtt gccatactgg aatgggatcg atcaaatcta       360
     ccagaacatc gacttgaagc aatttgtgca gctatggtgg aagcatgggg ttatccagat       420
     cttattcatg agattcggaa attctatgca tggcttttgg aaatgcaacc ctttgccaat       480
     ctagctaagg acggcttagc tccatatatt gcagaaacag ctctacgaaa tttatacatt       540
     ggagcgggta taaaggaaga ggaaattgaa aagtattaca agcaatttgc taaggattta       600
     ccaggttact tagaagatta caacgaagat gtcgttcatc aggcaggcac tgctgacgct       660
     ggtgcgacgg gaggaaatgc acctggttct gggggttcac ccccggcaag tggcgtgaca       720
     acacctccaa caagtggaac accaccagca actggagtaa cagcaccagc cacaggacaa       780
     cctgcttcag ggggaaaccc tccatcggct ggtgcagggg ttggagcaca agctgacgcg       840
     aattcagcga atacacagaa agacaaggat gtggatgctg gtacaacagg agcgctatca       900
     gtacctaaac tcaaagccat gtcaaagaaa atgcgattac ccaaggcaaa gggtagtgat       960
     atcttgcacc tggatttctt gcttaaatac aaaccacaac agcaagatat atcgaacacg      1020
     agagcaaccc gagaagagtt tgatagatgg tatgaagcca tacaaagaga atacgaaatt      1080
     aatgagacac agatgaagat cattatgagt ggtttaatgg tatggtgtat tgaaaatggt      1140
     tgctcaccaa atataaacgg gagttggact atgatggatg gagatgaaca aagggttttc      1200
     cctttgaaac cagtcattga gaatgcatca ccaacattcc gacagataat gcatcacttt      1260
     agtgatgccg ctgaagcata tattgagtat aggaactcaa ccgagagata tatgccaaga      1320
     tacggacttc agcgaaatct caccgactat agcttagcac ggtatgcctt tgatttttat      1380
     gagatgacat cacgcacacc agctagagct aaggaagccc acatgcagat gaaagccgca      1440
     gcagttcgtg gttcaaacac tcgactgttc ggtctggacg gaaatgtcgg cgagactcag      1500
     gagaatacag agagacacac agctggcgat gttagtcgca atatgcactc tctgttggga      1560
     gtgcagcagc accactaatc tcctggaaac cctgtttgca gtacctatag tatgttttgt      1620
     gtactagtat aaaagtgagg ctctgcctcg tcttttactt ttactatcca cgtactataa      1680
     gtgtgaacca gtctgcaagg cacagggttg gacccagtgt cttctggtat cgcacgtact      1740
     agcgtcgagc catgtcacgg acagcactgg gaatggcttt gccatgtgtg ctgcgagtct      1800
     catggtaaga gac                                                         1813
//