ID   FM997895; SV 1; linear; genomic RNA; STD; VRL; 1818 BP.
XX
AC   FM997895;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN8
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1818
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; df83420855613679cbba1221921efaa0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1818
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN8"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Shuangjiang"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C759"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C759"
FT                   /protein_id="CAX36844.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIQEDEIDSHCKMFANG
FT                   DDLLLAVHPDFEYILDGFQDHFSSLGLNFDFTSRTREKSDLWFMSTRGIKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVFHQAGTVDAGA
FT                   TGGGATGSGNPPSTGGVTAPATSGTPPVTGAAATATSVTQPASGGSPPSTGSGSGAQAD
FT                   ANSANAQKDKDVDAGTTGTLSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDIS
FT                   NTRATREEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1581
FT                   /product="Coat protein"
FT   3'UTR           1585..1818
XX
SQ   Sequence 1818 BP; 562 A; 379 C; 441 G; 436 T; 0 other;
     ggtaacaata gtgggcagcc atcgacagtc gtcgataata cgctaatggt tatcttagct        60
     ttcaattatg ccatgttgtc aagtggaatc caggaggatg aaatagatag tcattgcaag       120
     atgttcgcaa atggtgatga tttactctta gcagtgcacc ctgatttcga atacattttg       180
     gatgggttcc aagatcactt tagtagtctc ggtttgaatt tcgatttcac atctaggaca       240
     agagaaaaat ctgacttgtg gttcatgtca acaagaggaa taaagtgtga gaacatctat       300
     atacctaaac ttgagaagga gcgcatagtt gcaatacttg aatgggaccg atcaaattta       360
     cctgaacatc gacttgaggc aatttgtgca gctatggtgg aagcatgggg ttatccagat       420
     cttatacatg agattcggaa gttctacgca tggttacttg aaatgcaacc cttcgccaat       480
     ttggctaaag atggcctagc tccatacatt gcagagacag cgttacgaaa tttgtacatt       540
     ggagcaggca taaaggaaga agagatcgaa aaatattata aacaattcgc caaagatcta       600
     ccaggatatt tggaggatta taacgaagat gtcttccatc aagcaggcac cgtcgatgct       660
     ggtgcaacgg ggggtggtgc aactggttct ggaaacccac cttcaacagg cggtgttacg       720
     gcacctgcta cgagtggaac cccgccagta actggggcag cagcaaccgc tacaagtgtt       780
     acacaacctg cctcaggagg aagccctcct tcaactggat cgggatccgg agcccaagct       840
     gatgcaaact cagcaaacgc acaaaaagac aaagatgtgg atgctggtac aacgggaaca       900
     ttatcagtac caaagcttaa agccatgtca aagaaaatgc gactacccaa ggcgaagggt       960
     agtgacatct tgcacttgga tttcttactg aaatacaaac cacagcagca agatatatcg      1020
     aacacgagag caaccagaga ggaattcgat agatggtacg aagccataca aagagaatac      1080
     gaaattaatg agacacaaat gaaaatcatt atgagtggtt taatggtatg gtgtattgaa      1140
     aatggttgct caccaaacat aaacggaagt tggactatga tggatgggga tgaacaaaga      1200
     gttttccctt tgaagccagt cattgaaaac gcatcaccaa cattccgaca aataatgcat      1260
     cactttagtg atgctgctga agcgtacatt gagtacagaa actcaacaga gagatatatg      1320
     ccaaggtacg gacttcagcg aaatctcacc gactatagcc tagcgcggta tgcttttgat      1380
     ttctacgaaa tgacatcacg cacaccagct agagctaagg aagcccacat gcagatgaaa      1440
     gccgcagcag ttcgtggttc aaacactcga ctgttcggtc tggacggaaa tgtcggcgag      1500
     actcaggaga atacagagag acacacagct ggcgacgtta gtcgcaatat gcactctctg      1560
     ttgggagtgc agcagcacca ttaatctcct ggaaaccctg tttgcagtac ctatagtatg      1620
     ttctgtgtac tagtacaaca gtgaggctca gcctcgtctc tacttttact atttacgtac      1680
     tattagtgtg aaccagtctg caggatacag ggttggaccc agtgtcttct ggtgtagcac      1740
     gtactagcgt cgagccatgc cacggacagc actgggaatg gctttgccat gtgtgctgcg      1800
     agtctcatgg tgagagac                                                    1818
//