ID   FM997893; SV 1; linear; genomic RNA; STD; VRL; 1794 BP.
XX
AC   FM997893;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN6
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1794
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; c781e5c632d5fa10bc762af6d47446f3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1794
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN6"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Menghai"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1560
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C757"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C757"
FT                   /protein_id="CAX36842.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIREDEIDNCCKMFANG
FT                   DDLLLAVHPDFEYILDGFQTHFSNLGLNFDFTSRTKEKSDLWFMSTRGMKCENIHIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVVHQAGTVDAGA
FT                   TGGTPPASGVTAPASGTPPATGAVAPATGATQPASGGNPPSTSPGTGAQADANSANAQK
FT                   DKDVDAGTTGTLSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDISNTRATREE
FT                   FDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPV
FT                   IENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTS
FT                   RTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQGNTERHTAGDVSRNMRSLLGVQQ
FT                   HH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1557
FT                   /product="Coat protein"
FT   3'UTR           1561..1794
XX
SQ   Sequence 1794 BP; 564 A; 375 C; 435 G; 420 T; 0 other;
     gggaacaata gtgggcagcc atcaacagtt gtagataaca cgctaatggt gatcttagct        60
     ttcaactatg ccatgctgtc aagtgggatt cgagaagatg aaatcgataa ctgttgcaag       120
     atgttcgcaa atggcgatga cttactattg gcagtgcacc ctgattttga gtacatccta       180
     gatgggtttc aaactcattt cagtaacctc ggtttgaact tcgattttac atctcgaacg       240
     aaggaaaaat ccgatttatg gtttatgtca acgagaggaa tgaagtgcga gaacattcac       300
     atacctaaac tcgagaagga gcgtatagtt gccatattgg aatgggatcg atcaaatcta       360
     ccagaacatc gacttgaagc aatttgtgca gctatggtag aggcatgggg ttatccagat       420
     ctcattcatg aaattcggaa attttatgcg tggcttctgg aaatgcaacc ctttgccaat       480
     ctagcaaagg atggtttagc tccatacatc gcagaaacag ctttacgaaa tttgtacatt       540
     ggagcaggta taaaggaaga ggagatcgag aagtactaca agcagtttgc aaaggatttg       600
     ccaggatact tagaagacta caacgaagat gttgttcatc aggcaggcac tgtcgacgct       660
     ggcgcaacgg gaggaacacc tccagcaagc ggtgtgacag cacccgcaag cggaacacca       720
     ccagcaactg gagcagtagc accagccaca ggagctacac aacctgcttc agggggaaac       780
     cctccatcga ctagtccagg aaccggagca caagctgatg caaattcagc aaacgcacaa       840
     aaagataaag atgtggatgc tggcacaaca ggaacgttgt cagtacctaa gctcaaagcc       900
     atgtcaaaga aaatgcgact acccaaggca aagggtagtg atattttgca cttggatttc       960
     ttacttaaat acaaaccaca acaacaagat atatcgaaca caagagcaac cagagaagag      1020
     ttcgatagat ggtatgaggc catacaaaga gagtatgaaa ttaatgagac acaaatgaag      1080
     atcattatga gtggtctaat ggtatggtgc attgaaaacg gttgctcacc aaacataaac      1140
     ggaagttgga ccatgatgga tggggacgaa caaagggtct tccccttgaa accagttatt      1200
     gagaatgcat caccaacatt tcggcaaata atgcatcact tcagtgatgc tgctgaagcg      1260
     tatattgaat acagaaactc aactgagaga tatatgccaa gatacggact tcagcgaaat      1320
     ctcaccgact atagcctagc acggtatgct ttcgattttt acgaaatgac atcacgcaca      1380
     ccagctagag ctaaagaagc ccacatgcag atgaaagccg cagcagttcg tggttcaaac      1440
     actcgactgt tcggtctgga cggaaatgtc ggcgagactc aggggaatac agagagacac      1500
     acagctggcg acgttagtcg caatatgcgc tctctgttgg gagtgcagca gcaccattaa      1560
     tctcctggaa accctgtttg cagtacctat agtatgttct gtgtactagt ataagagtga      1620
     ggctctgcct cgtttctact tttactattt atgtactata agtgtgaacc agtctgcaag      1680
     acacagggtt ggactcagtg tcttctggtg taacacgtac tagcgtcgag ccatgttacg      1740
     gacggcactg ggaatggcgt tgccatgtgt gctgcgagtc tcatggtaag agac            1794
//