ID   FM997892; SV 1; linear; genomic RNA; STD; VRL; 1818 BP.
XX
AC   FM997892;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN5
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1818
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 1faad6bf24ab906f15606b17c970085d.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1818
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Luohanzhe"
FT                   /isolate="YN5"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Luoping"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C756"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C756"
FT                   /protein_id="CAX36841.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIQENEIDNCCRMFANG
FT                   DDLLLAVHPDFEHILDGFQTHFSSLGLNFDFTSRTKEKSDLWFMSTRGMKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIYEIRKFYAWLLEMQPFSNLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVFHQAGTVDAGA
FT                   TGGGVNATGGTPPSSGATVTPGSGTPPSTGATPPSTGATQPTSGSNPPTTGAGVGEQAG
FT                   ANTTTGQKDKDVDAGTTGALSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDIS
FT                   NTRATREEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1581
FT                   /product="Coat protein"
FT   3'UTR           1585..1818
XX
SQ   Sequence 1818 BP; 579 A; 384 C; 430 G; 425 T; 0 other;
     ggaaacaata gcgggcaacc atcaacagtt gtcgataata cactaatggt gatcttagct        60
     ttcaactatg ccatgttatc aagtggaatt caagaaaacg aaattgacaa ctgttgtaga       120
     atgtttgcaa acggcgacga tttactctta gcagtgcacc ctgattttga acacatctta       180
     gatggatttc aaactcactt cagtagcctc ggtttaaact tcgattttac atctcgaaca       240
     aaggagaaat ctgatttatg gtttatgtca acgagaggaa tgaagtgcga aaacatttat       300
     atacctaaac ttgagaagga gcgaatagtt gccatactgg aatgggaccg atcaaatcta       360
     ccagaacatc gacttgaagc aatttgtgca gctatggtag aagcatgggg ctatccagat       420
     ctcatttatg aaattcggaa attctatgca tggcttctgg aaatgcaacc cttttccaat       480
     ctggcaaagg atggcttggc cccatacatc gcagaaacag ctctacgcaa tttgtacatt       540
     ggagcaggca taaaggagga ggagatagaa aaatactaca agcaatttgc caaggatcta       600
     ccaggatact tagaagatta caacgaggat gtattccacc aagcaggaac tgtggatgca       660
     ggggcaacag gaggaggtgt taatgcaaca ggaggcacac ctccatccag tggagcgaca       720
     gtaacccctg gaagcggtac accaccatct actggagcaa ctccaccgag tacgggtgcc       780
     acgcaaccta cctcaggcag taatccacca acgactggag ctggtgttgg tgaacaagca       840
     ggagcaaaca caacaactgg ccaaaaagac aaagacgtgg atgctggtac aacaggagca       900
     ttatcagtac ctaaactcaa agccatgtca aagaaaatgc gactacccaa agcaaagggt       960
     agtgatatct tgcacttgga tttcttgctt aaatacaaac cacagcagca agatatatcg      1020
     aacacgagag caaccagaga ggagttcgat agatggtatg aagccataca gagagaatac      1080
     gaaattaatg agacccaaat gaaaatcatt atgagtggtc taatggtatg gtgtatcgaa      1140
     aatggttgct caccaaatat aaacggaagt tggactatga tggatggaga tgaacaaagg      1200
     gttttccctt tgaaaccggt cattgaaaac gcatcaccaa catttcgaca aataatgcat      1260
     cacttcagtg atgccgctga agcatatatt gagtatagga attcaactga gagatatatg      1320
     ccaagatatg gacttcagcg aaatctcacc gactatagct tagcgcggta tgcctttgat      1380
     ttttacgaga tgacatcacg cacaccggct agagctaagg aagcccacat gcagatgaaa      1440
     gccgcagcag ttcgtggttc aaacactcga ctgttcggtc tggacggaaa tgtcggcgag      1500
     actcaggaga atacagagag acacacagct ggcgatgtta gtcgcaacat gcactccctg      1560
     ttgggagtgc agcagcacca ctaatctcct ggaaaccctg tttgcagtac ctttagtatg      1620
     ttctgtgtac tagtacaaaa gtgaggctcc gcctcgtttc tacttttact atttacgtac      1680
     tataagtgtg aaccagtctg caggatacag ggttggaccc agtgtcttct ggtgtagcac      1740
     gtactagcgt cgagccatgt cacggacagc actgggaatg gctttgccat gtgtgctgcg      1800
     agtctcatgg tgagagac                                                    1818
//