ID   FM997891; SV 1; linear; genomic RNA; STD; VRL; 1818 BP.
XX
AC   FM997891;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN4
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1818
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; e8378877d610db19f8e46f14f76e0123.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1818
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Luohanzhe"
FT                   /isolate="YN4"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Longling"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C755"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C755"
FT                   /protein_id="CAX36840.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIQEDEIDNCCRMFANG
FT                   DDLLLAVHPDFEYILDGFQNHFSSLGLNFDFTSRTKEKSDLWFMSTRGIKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGTGIKEEEIEKYYKQFAKDLPGYLEDYNEDVVHQAGTVDAGA
FT                   TGGNAAGSGGAPPASGVTAPAASGTPPATGAAATATGSAQPATGGNPPSTGSGAGAQTD
FT                   ASAANAQKDKDVDAGTTGALSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDIS
FT                   NTRATREEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1581
FT                   /product="Coat protein"
FT   3'UTR           1585..1818
XX
SQ   Sequence 1818 BP; 573 A; 372 C; 434 G; 439 T; 0 other;
     ggcaataaca gcgggcagcc atcaacagtt gtcgataaca cgttgatggt aattttagct        60
     tttaattatg ccatgttatc aagtggaatt caagaagacg aaatcgacaa ttgttgtaga       120
     atgttcgcaa atggtgacga tttactctta gcagtgcacc ccgacttcga atacatttta       180
     gacggattcc aaaaccactt tagtagcctc ggtttaaact ttgattttac atctcgaaca       240
     aaggagaaat ccgacttgtg gttcatgtca acaagaggaa taaagtgtga gaatatttac       300
     atacctaaac ttgaaaagga gcgtatagtc gctatactag aatgggatcg gtcaaattta       360
     cctgagcatc gacttgaagc aatctgtgca gctatggttg aagcatgggg ctatccagat       420
     ctaatccatg aaatacggaa gttttatgca tggctgcttg agatgcaacc ctttgctaat       480
     ctggcgaaag atggcttagc tccatatatt gcagagacag ctctacgcaa tttgtatatt       540
     ggaacaggca taaaggaaga ggaaatcgaa aagtattata aacagtttgc gaaggatcta       600
     ccaggttatt tggaagatta caatgaagat gtggtccatc aggcaggcac tgtcgatgct       660
     ggtgcaacag gagggaacgc agctggttct ggaggtgcgc ctccagcaag tggtgttaca       720
     gcacctgcgg caagtggaac accaccagct actggagcag cagcaacagc tactgggtct       780
     gcgcaacctg ctacaggggg aaatcctcca tcgactggtt caggagctgg agcacaaact       840
     gatgcaagcg cagcgaatgc acaaaaagat aaagatgtgg atgctggtac aacaggagct       900
     ctatcagtac caaagctcaa agccatgtca aagaaaatgc gattacccaa agcaaagggt       960
     agtgacatct tgcacttaga tttcctactc aaatacaaac cacaacagca agatatttcg      1020
     aacacaagag caaccagaga agagttcgat agatggtatg aagccataca aagagaatat      1080
     gaaatcaatg aaacacaaat gaaaatcatt atgagtggtt taatggtgtg gtgcattgaa      1140
     aatggttgct cgccaaatat aaatggaagt tggaccatga tggatggaga tgaacaaaga      1200
     gttttcccct tgaaaccagt cattgaaaac gcatcaccaa cattccgaca aataatgcat      1260
     cacttcagtg atgctgctga agcatatatc gagtatagaa actcaactga gagatacatg      1320
     ccaagatacg gacttcagcg aaatctcacc gactatagcc tagcgcggta tgcctttgac      1380
     ttttacgaaa tgacatcacg cacaccagct agagctaaag aagcccacat gcagatgaaa      1440
     gccgcagcag ttcgtggttc aaacactcga ctgttcggtc tggacggaaa tgtcggcgag      1500
     actcaggaga atacagagag acacacagct ggcgatgtta gtcgcaatat gcactctctg      1560
     ttgggagtgc agcagcacca ttaatctcct ggaaaccctg tttgcagtac ctatagtatg      1620
     ttttgtgtac tagtacaaaa gtgaggctct gcctcgtttc tacttttact atttacgtac      1680
     tgtaagtgtg aaccagtctg caagatacag ggttggaccc agtgtcttct ggtgtagcac      1740
     gtactagcgt cgagccatgt cacggacagc actgggaatg gctttgccat gtgtgctgcg      1800
     agtctcatgg taagagac                                                    1818
//