ID   FM997890; SV 1; linear; genomic RNA; STD; VRL; 1815 BP.
XX
AC   FM997890;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN3
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1815
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; 700049253a60414bf7dcf021c0735fc8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1815
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN3"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Honghe"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C754"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C754"
FT                   /protein_id="CAX36839.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIQDNEIDNCCKMFANG
FT                   DDLLLAVHPDYEHILDGFQTHFGNLGLNFEFNSRTREKSNLWFMSTQGLKCEGIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYSDLIHEIRKFYAWLLEMQPFANLAK
FT                   EGLAPYIAETALRNLYLGSGIKGEEIEKYFRQFAKDLPGYLEDYNEEVFHQAGTVDAGA
FT                   QGGGGNAGTQPPTTGAAAQGGAQPPATGAAAQPPATQGSQPPTGGATGGGGVQTGTGGT
FT                   GSVTGGQRDKDVDAGTTGKITVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDIS
FT                   NTRATREEFDRWYEAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMNSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1581
FT                   /product="Coat protein"
FT   3'UTR           1585..1815
XX
SQ   Sequence 1815 BP; 574 A; 374 C; 450 G; 417 T; 0 other;
     gggaacaaca gtgggcaacc atcaactgta gttgacaata cgctaatggt catcttagca        60
     ttcaattatg cgatgttgtc aagtggaata caagacaatg aaatcgacaa ctgttgcaaa       120
     atgtttgcta atggggatga tctactgttg gcagtacatc ccgattacga acatatactg       180
     gatggctttc agactcactt tggaaacctt ggtttaaatt ttgaattcaa ttcacgaacg       240
     agggaaaaat cgaacttgtg gttcatgtca acgcaagggc tcaagtgtga gggcatttat       300
     ataccaaaac tcgaaaagga acgaatagtc gccatactcg agtgggatcg ctcaaatcta       360
     cccgagcacc gtctagaagc catctgtgca gcaatggttg aagcgtgggg ctattcagat       420
     ctcatacatg aaattcggaa attttatgca tggcttttgg aaatgcaacc atttgcaaat       480
     ctagccaaag agggcctagc tccatatatt gcagaaacag cgcttcgtaa cttgtatcta       540
     ggttcaggga ttaagggaga ggaaatcgaa aaatacttca ggcagtttgc aaaggacctc       600
     cctgggtatc tagaggatta caacgaagaa gttttccacc aagctggaac agtcgatgca       660
     ggtgctcaag gaggaggcgg aaacgccgga actcaaccgc caaccactgg agcagcagct       720
     caaggaggag ctcaaccacc agcaactgga gcagccgcgc aaccacctgc aactcaaggt       780
     tcacaaccgc ccacaggggg agctactggt ggaggtggtg tacaaacagg aactggtgga       840
     actggctcag tcacaggagg ccaaagagac aaggatgtag atgctggtac aacaggtaaa       900
     atcacagtgc caaaacttaa agccatgtcg aagaagatgc gcttgccaaa agcaaaagga       960
     aaagatgttt tacatttgga ctttctgtta acatacaaac cgcaacaaca agacatatca      1020
     aacacaagag caaccagaga ggagtttgat agatggtatg aagccataaa gaaggaatat      1080
     gaaatagatg acacacaaat gacagttgtc atgagtggtc taatggtatg gtgtattgag      1140
     aatggttgct caccaaacat aaacggaagt tggacaatga tggatggaga tgaacaaaga      1200
     gtcttcccat tgaagccagt tattgaaaac gcatctccaa catttcggca aataatgcat      1260
     catttcagtg atgcagctga agcatatatc gagtatagaa actctacaga gcgatacatg      1320
     ccacgatatg gacttcagcg aaatctcacc gactatagct tagcgcggta tgcatttgac      1380
     ttttatgaaa tgaattcaag gacaccagct agagctaagg aagcccacat gcagatgaag      1440
     gccgcagcag ttcgtggttc aaacacacga ctgtttggtc tggacggaaa tgtcggcgag      1500
     acccaggaga atacagagag acacacagct ggcgatgtta gtcgcaatat gcactctctg      1560
     ttgggagtgc agcaacacca ctagtctcct ggaaaccctg tttgcagtac ctatagtatg      1620
     tactaataat gtatgtcagt gaggttttac ctcgtcttca ctatattacg tatgtactta      1680
     aagcgtgaac cagtctgcag gacaaagggt tggacccagt gtcttctggt gtagcgtgta      1740
     ctagcgtcga gccacgtgac agacagcact gggtgtggct ttgccattag tgttgcgagt      1800
     ctcttggtga gagac                                                       1815
//