ID   FM997889; SV 1; linear; genomic RNA; STD; VRL; 1798 BP.
XX
AC   FM997889;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN2
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1798
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; fdbb2c1958031caa2586e9ee36fa03db.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1798
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN2"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Hekou"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1566
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C753"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C753"
FT                   /protein_id="CAX36838.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSSGIRGDEIDNCCRMFANG
FT                   DDLLLAVHPDFEYILDGFQTHFSDLGLNFDFSSRTKEKSDLWFMSTRGIKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDYNEDVVHQAGTVDAGA
FT                   TGGNAPGSGGSPPASGVTAPASGTPPTTGATVTQPASGGNPPSTGAGAGAQPDANSANA
FT                   QKDKDVDAGTTGALSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYNPQQQDISNTRATR
FT                   EEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLK
FT                   PVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEM
FT                   TSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGV
FT                   QQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1563
FT                   /product="Coat protein"
FT   3'UTR           1567..1798
XX
SQ   Sequence 1798 BP; 550 A; 363 C; 439 G; 446 T; 0 other;
     gggaataata gcgggcagcc atcaacagtt gtcgataata cattaatggt gattttagct        60
     ttcaattatg ccatgttgtc aagtggaatt cgaggagacg aaattgataa ctgttgtaga       120
     atgtttgcta acggcgatga tttactttta gcggtgcacc ccgattttga gtatatctta       180
     gacggatttc aaactcattt tagtgacctc ggtttaaact ttgatttttc atctcgaaca       240
     aaggagaaat ctgacttatg gtttatgtca acaagaggaa taaaatgcga aaacatttat       300
     atacctaaac ttgagaagga acgcatagtt gccatactag aatgggaccg atcgaattta       360
     ccagaacatc gactcgaagc aatttgtgca gctatggtag aggcatgggg ttatccagat       420
     cttatccatg aaattcggaa attttatgca tggcttctgg aaatgcaacc cttcgccaat       480
     ctggcaaaag acggcttggc tccgtacatt gcggaaacag ctctacgcaa tttatacatt       540
     ggagcaggta taaaggaaga ggaaatcgaa aagtactaca agcagtttgc caaggattta       600
     ccaggatacc tagaagacta caacgaggac gttgttcatc aggcaggcac tgttgatgct       660
     ggcgcaacgg gaggaaatgc acctggttct gggggttcgc ccccggctag cggtgtgaca       720
     gcaccagcaa gcggaacacc accaacaact ggagcgacag tgacacaacc tgcttcaggg       780
     ggaaaccccc catcgactgg cgcaggggcc ggagcacaac ctgatgcgaa ttcagcgaat       840
     gcacaaaagg ataaagatgt ggatgctggt acgacaggag cgttatcagt acctaaactt       900
     aaagccatgt caaagaaaat gcgattaccc aaggcaaagg gtagtgatat cttgcacttg       960
     gatttcttgc ttaaatacaa cccacaacag caagatatat cgaacacgag agcaaccagg      1020
     gaagagttcg atagatggta tgaagccata caaagagaat atgaaattaa tgaaacacaa      1080
     atgaaaatca ttatgagtgg tctaatggtg tggtgtattg aaaatggttg ctcaccaaat      1140
     ataaacggaa gttggactat gatggatgga gatgaacaaa gggttttccc tttaaaacca      1200
     gttattgaga atgcatcacc aacttttcga cagataatgc atcactttag tgatgctgct      1260
     gaagcatata ttgagtatag gaactcaacc gaaagataca tgccaagata tggtcttcag      1320
     cgaaatctca ccgactatag cttagcgcgg tatgccttcg atttttatga gatgacatca      1380
     cgcaccccag ctagagctaa ggaagcccac atgcagatga aagccgcagc agttcgtggt      1440
     tcaaacactc ggctgttcgg tctggacgga aatgtcggcg agactcagga gaatacagag      1500
     agacacacag ctggtgatgt tagtcgcaac atgcactctc tattgggagt gcagcagcat      1560
     cactaatctc ctggaaaccc tgtttgcagt acctatagta tgttttgtgt actagtatga      1620
     aagtgaggct ccgcctcgtt tctactttta ttatttacgt actataagtg tgaaccagtc      1680
     tgcaagacac agggttggac ccagtgtctt ctggtgtagc acgtactagc gtcgagccat      1740
     gtcacggaca gcactgggag tggctttgcc atgtgtgctg cgagtcccat ggtaagag        1798
//