ID   FM997888; SV 1; linear; genomic RNA; STD; VRL; 1818 BP.
XX
AC   FM997888;
XX
DT   19-MAY-2010 (Rel. 104, Created)
DT   19-MAY-2010 (Rel. 104, Last updated, Version 1)
XX
DE   Sugarcane mosaic virus partial polyprotein gene, genomic RNA, isolate YN1
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1818
RA   Adams M.J.;
RT   ;
RL   Submitted (10-FEB-2009) to the INSDC.
RL   Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West
RL   Common, Herts., AL5 2JQ, UNITED KINGDOM.
XX
RN   [2]
RX   DOI; 10.1111/j.1439-0434.2009.01642.x.
RX   AGRICOLA; IND44366093.
RA   Wang J.G., Zheng H.Y., Chen H.R., Adams M.J., Chen J.P.;
RT   "Molecular Diversities of Sugarcane mosaic virus and Sorghum mosaic virus
RT   Isolates from Yunnan Province, China";
RL   J. Phytopathol. 158(6):427-432(2010).
XX
DR   MD5; e253893aac094cfb2e2b697b47972d43.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1818
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Saccharum officinarum cv. Badila"
FT                   /isolate="YN1"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan,Binchuan"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1584
FT                   /codon_start=1
FT                   /gene="polyprotein"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:D6C752"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:D6C752"
FT                   /protein_id="CAX36837.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAFNYAMLSNGIREEDIDNCCKMFANG
FT                   DDLLLAVHPDFEHILDGFQKHFSNLGLNFDFTSRTKEKSDLWFMSTRGIKCENIYIPKL
FT                   EKERIVAILEWDRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLIEMQPFANLAK
FT                   DGLAPYIAETALRNLYIGAGVKEEEIEKYYRQFAKDLPGYLEDYNEDVVHQAGTVDAGA
FT                   TGGSVTGSGSQPPTSSVTTPAASGTPPATGAAATATGSAQPASGGSSPPTGSGAGAQAD
FT                   ASSANTQKDKDVDAGTTGALSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDIS
FT                   NTRATREEFDRWYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQ
FT                   RVFPLKPVIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYA
FT                   FDFYEMTSRTPARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNM
FT                   HSLLGVQQHH"
FT   mat_peptide     <1..642
FT                   /product="NIb polymerase"
FT   mat_peptide     643..1581
FT                   /product="Coat protein"
FT   3'UTR           1585..1818
XX
SQ   Sequence 1818 BP; 576 A; 372 C; 436 G; 434 T; 0 other;
     gggaacaaca gtggccaacc atcaacagta gttgacaata cactaatggt gatcttggcc        60
     tttaattatg ccatgttgtc aaatggaatt cgagaagagg atattgacaa ttgttgcaaa       120
     atgtttgcaa atggtgacga cctactctta gccgttcatc ctgatttcga acatatctta       180
     gatggatttc agaagcactt tagtaatctt ggtttaaatt tcgacttcac atcccgaaca       240
     aaggaaaaat ctgatttatg gttcatgtca acaagaggga taaagtgtga aaacatctac       300
     ataccaaaac ttgagaagga gcgcatagtt gccatacttg aatgggatcg atcaaattta       360
     cctgagcatc gacttgaagc aatctgtgca gccatggtgg aagcatgggg ttatccagat       420
     ctcatacacg aaattcggaa gttttatgca tggttaatag aaatgcaacc ctttgctaat       480
     ttggctaaag atggcctagc tccgtacata gcggaaacag ctctacgcaa tttgtacatt       540
     ggagcaggcg taaaagaaga ggagattgaa aaatattaca gacaatttgc caaagatcta       600
     ccaggatatt tggaggatta taatgaggac gttgtccatc aggcaggtac tgttgacgct       660
     ggtgcaacag gaggaagcgt gactggttct gggagtcaac ccccaacaag tagcgtgaca       720
     acacccgcag caagtggaac cccaccagca accggagcag cagcaacagc tacaggatct       780
     gcacaacctg cttcgggagg aagttcccca ccaactggct caggagctgg agcacaggct       840
     gacgcaagtt cagcgaatac acaaaaagac aaagacgtgg atgcaggcac aacaggagcg       900
     ttatcagtgc caaagcttaa agccatgtca aagaaaatgc gattacccaa agcaaagggt       960
     agtgatatct tgcacttgga tttcttactt aaatacaaac cacaacagca agatatatca      1020
     aatacgagag caaccaggga agagttcgat agatggtatg aggccataca aagagagtat      1080
     gaaatcaatg agacacaaat gaaaatcatt atgagtggtt taatggtgtg gtgcattgag      1140
     aatggttgct caccaaatat aaacggaagt tggactatga tggatggaga tgaacaaagg      1200
     gttttccctt tgaagccagt cattgaaaac gcatcaccaa cattccgaca gataatgcat      1260
     cacttcagtg atgctgctga agcgtatatt gaatatagga actcaactga gagatatatg      1320
     ccaagatacg gacttcagcg aaatctcacc gactatagcc tagcacggta tgcctttgat      1380
     ttttacgaaa tgacatcacg tacaccggct agagctaagg aagcccacat gcagatgaaa      1440
     gccgcagcag ttcgtggttc aaacactcga ctgttcggtc tggacggaaa tgtcggcgag      1500
     actcaggaga atacagagag acacacagct ggcgacgtta gtcgcaatat gcactctctg      1560
     ttgggagtgc agcagcacca ctagtctcct ggaaaccctg tttgcagtac ctatagtatg      1620
     ttttatgtac tagtataaaa gtgaggctcg gccttgtttc tacttctact atttacgtac      1680
     tataagtgtg aaccagtctg caagacacag ggttagaccc agtgtcttct ggtgtagcac      1740
     gtactagcgt cgagccatgt cacggatagc actgggaatg gctttgccat gtgtgctgcg      1800
     agtctcatgg tgagagac                                                    1818
//