ID   FM881901; SV 1; linear; genomic RNA; STD; VRL; 2214 BP.
XX
AC   FM881901;
XX
DT   03-MAR-2009 (Rel. 100, Created)
DT   03-MAR-2009 (Rel. 100, Last updated, Version 1)
XX
DE   Gayfeather mild mottle virus, segment 3, 3a gene for 3a protein and cp gene
DE   for coat protein, genomic RNA, complete genome
XX
KW   complete genome.
XX
OS   Gayfeather mild mottle virus
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2214
RA   Glover R.H.;
RT   ;
RL   Submitted (01-DEC-2008) to the INSDC.
RL   Glover R.H., Plant Health Group, Central Science Laboratory, Sand Hutton,
RL   York, YO41 1LZ, UNITED KINGDOM.
XX
RN   [2]
RA   Adams I.P., Glover R.H., Monger W.A., Mumford R., Boonham N.;
RT   "Next generation sequencing and metagenomic analysis: a universal
RT   diagnostic tool in plant virology.";
RL   Unpublished.
XX
DR   MD5; 5d45cf356577a0ab3992d7219397daf8.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2214
FT                   /organism="Gayfeather mild mottle virus"
FT                   /segment="3"
FT                   /host="Liatris spicata"
FT                   /mol_type="genomic RNA"
FT                   /country="Lithuania"
FT                   /db_xref="taxon:578305"
FT   CDS             102..944
FT                   /gene="3a"
FT                   /product="3a protein"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:C0MNB5"
FT                   /protein_id="CAT02559.1"
FT                   /translation="MAFKGNSRTLTQQSSAASSDDLHNILFSPEPLKKLATKCDLGRHH
FT                   WMRADNAVCVRPLVPETTSNALTKWFSSGYEAGELPSKGYMSVPQVLCAITRTVTSDAE
FT                   GSLRIYLADLGDKERAPIDAQVVSLHNRDLPAIVSFHPTYDCPMEQLGGISRCFALVIE
FT                   RYGYIGHNGTTASVCSNWQPKFSSKNNNYKPAAAGKTLVLPYDRLSELSKPSAVARLLK
FT                   SQLNMHSSPFFQLPEEAVTQKAIGSESEVMSEKGGHPHAKDYSELQGRGSVPFVVNGV"
FT   CDS             1247..1900
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /db_xref="GOA:C0MNB6"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:C0MNB6"
FT                   /protein_id="CAT02560.1"
FT                   /translation="MAQSGTGGSSRRPRRGRRNNNNRNNDRDKALRDLTVQVKRLAIIA
FT                   ASTAPSLQHPTFIASQRCRPGYTYTSLDVRPTKTEKGHSFGQRLTIPVPVSDYPKKKVS
FT                   CVQVRLNPSPKFDSTIWVSLRRLDETTILTSENVFKLFTDGAASVLIYQHVTTGVQPNN
FT                   KITFDMSNVDAEIGDMNRYALIVYSKDDVLEADEMVIHVDVEHQRIPSATSLPV"
XX
SQ   Sequence 2214 BP; 567 A; 540 C; 510 G; 597 T; 0 other;
     gtattcttac caacaacaac tactgtaact caacgtgtgt tgacccaccg tgtgtgtgtg        60
     tgcgtgtgtg tgtgtgttgt ctgtgtttga atatccttaa tatggcattt aaaggtaaca       120
     gtcggacttt aactcaacag tcctccgcgg cgtcgtctga tgatttacac aacatattat       180
     tcagcccgga gccattaaag aaattggcga caaaatgcga cctaggtcga caccactgga       240
     tgcgcgccga taacgccgtg tgtgtcagac ccctcgttcc agaaactaca tccaatgcct       300
     tgacgaagtg gttctcttca ggatatgaag ctggggagtt accatctaag ggatacatga       360
     gcgtcccaca agttctttgc gcgattacca ggacggtaac ttctgatgct gaaggttccc       420
     ttcgcattta tctagccgac cttggtgata aagaacgagc acctatagat gctcaagtcg       480
     tcagtttaca caaccgtgac ctccctgcta tagtgtcatt ccacccaaca tacgattgtc       540
     ctatggaaca actaggcgga attagcaggt gttttgcgtt ggttatcgaa aggtacggtt       600
     acattggaca taacggaact accgcgagcg tgtgtagtaa ttggcaaccg aagttttctt       660
     cgaagaacaa taattataag cccgccgccg ctggtaagac tctcgttcta ccctatgaca       720
     ggttgtcaga gctatcgaaa ccatcagccg tagctcgcct gctaaaatcg cagctcaaca       780
     tgcacagctc tcctttcttt cagttacctg aggaggccgt tacgcagaaa gcgattggta       840
     gtgagtctga ggttatgagc gaaaaaggag gccatcctca cgctaaggat tattcagagc       900
     tccagggtcg tggatcagtt ccgtttgtgg tgaacggtgt ctgaaaccct gtagttatat       960
     atacgtgttg tacattaata tgtgtgtgcg taaactatat atatacgtgt gtgatatcgt      1020
     tgagttaaag attgatcacc gagctctacg gattgggaag gttacccatc tggtttatac      1080
     aagcccgtga catacgtgtt taggttcaat tccttctccg ttcctgtcag gttcctttat      1140
     attcacggat gcttctccat gactagcgta aagtatcgat ctgttgttgt atcgtgtctt      1200
     tctgtttatt tgtcttgtac ttatttactt tcaccaccac acaagtatgg cccaaagcgg      1260
     tactggagga agctctcgac gacccagaag aggtcgtcgt aacaacaaca accgtaacaa      1320
     cgaccgtgac aaagcccttc gggacttaac ggtccaagtt aagcgtttag ctatcatagc      1380
     ggcttctact gcgccatccc tacaacatcc gacttttatt gcaagtcaaa ggtgtcgtcc      1440
     tggttacacc tacacttcgt tggatgtcag accgacaaaa actgagaagg gtcatagttt      1500
     cggtcagagg ttaacaattc cagtaccggt gtcagattat ccgaagaaga aagtctcttg      1560
     cgtgcaagtc agactgaacc catcgccaaa attcgattca actatatggg tttcccttcg      1620
     tcgtctggac gaaacaacca ttcttacttc ggaaaacgtg tttaagcttt tcacagacgg      1680
     agctgcatcc gtgcttatct accaacacgt tacaaccggt gtccaaccaa ataacaagat      1740
     caccttcgac atgtctaatg tcgacgctga gatcggtgac atgaacagat acgctctgat      1800
     cgtctattcg aaggacgatg ttcttgaagc cgacgaaatg gtgatacatg tggacgttga      1860
     gcaccagcgt atcccttccg ctacgtcgct cccggtttga atctgacgcc ccgtccgaag      1920
     acgttaaact accctgaacc acgttcaggc gcctgagttg gtagtatcgc taaaactgcc      1980
     tgaagtcact aaacgcattt tgcggtgaac gggttgtcca tccagctaac ggctaaaatg      2040
     gtcagtcacg cttaacagtg tgccgtctcc ctacaggtga gacgaggtgc ctttgaagtc      2100
     ctctcctaga cttcttcgga aggtgacggt cccagaccgt cccgtgcatg ctactacact      2160
     gatagtagca agagtgcagg catcgcccat ggtttaccat gggtcctcca aaag            2214
//