ID FM881900; SV 1; linear; genomic RNA; STD; VRL; 2935 BP. XX AC FM881900; XX DT 03-MAR-2009 (Rel. 100, Created) DT 03-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Gayfeather mild mottle virus, segment 2, 2a gene for 2a protein and 2b gene DE for 2b protein, genomic RNA, complete genome XX KW complete genome. XX OS Gayfeather mild mottle virus OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-2935 RA Glover R.H.; RT ; RL Submitted (01-DEC-2008) to the INSDC. RL Glover R.H., Plant Health Group, Central Science Laboratory, Sand Hutton, RL York, YO41 1LZ, UNITED KINGDOM. XX RN [2] RA Adams I.P., Glover R.H., Monger W.A., Mumford R., Boonham N.; RT "Next generation sequencing and metagenomic analysis: a universal RT diagnostic tool in plant virology."; RL Unpublished. XX DR MD5; 073a3c30391b81dbd043f9e2bdc5e8ce. XX FH Key Location/Qualifiers FH FT source 1..2935 FT /organism="Gayfeather mild mottle virus" FT /segment="2" FT /host="Liatris spicata" FT /mol_type="genomic RNA" FT /country="Lithuania" FT /db_xref="taxon:578305" FT CDS 97..2430 FT /gene="2a" FT /product="2a protein" FT /db_xref="GOA:C0MNB3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C0MNB3" FT /protein_id="CAT02557.1" FT /translation="MASTDVIFSLENLLNGSYGVVTPEDDALFRQRSMYDASVSDDSII FT TDDDDAVAFTCDDVSADGHGESNPSDPCSEDGCQFNDNPVLYDIEEYQALSDSELFALF FT DTIVKPIKFGSILTPEFSRPRFYTALSLAKSVSVISNRPSTFGEVSPELIKAIYIGEPI FT TSVSGAHAVGDTPDDCEGYVFVPSEPTSNFEPPPICEECGLAAYHCPHFDFNALKETHN FT DHTISHDYEIETLTGVIDDATLLMNLGPFLVPIQCEYSKTFESKHATKPSLARPTDRVD FT VDVVQAVCDSMLPTHVNYDDTYHQVFVEDSDYSVDIDRIRLKQSDLLPKVSDDGHMHPV FT LNTGSGHKRVGTQKEVHTAIKKRNADVPELGDSVNLTRLSEAVAERFISSYMNVNALVS FT SNFINVVGNFHAYMQKWHSSLSYDDLPDLNAENLQFYEHMVKSDVKPSVTDTLNVDRPV FT PATITFHKKQITSQFSPLFTALFERFQRCLRSKVVLPVGKISSLELEDFSVIGKHCLEI FT DLSKFDKSQGELHLMIQEQILNRLGCPAHVSKWWCDFHRQSYIKDKRAGVGMALSFQRR FT TGDAFTYFGNTLVTMALFCWCYDTEQFDRMLFSGDDSLAFSSIAPVGDPSKFTTLFNME FT AKVMEPSVPYICSKFLLTDEFGQTFSVPDPLREIQRLGSKKIPYSDDDSFLHAHFMSFV FT DRLKFLERMSQFTIDQLTLFYEMKYKKSGADASLVLGAFKKYTTNFNAYKELYFSDRHQ FT CDLINSFSIGDFVIKLYVEKPARR" FT CDS 2443..2805 FT /gene="2b" FT /product="2b protein" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:C0MNB4" FT /protein_id="CAT02558.1" FT /translation="MSTVTFDQMISKLARLQEKQSVRRAHHKRNKKERGHKTPSERKRS FT EFWKRKCEEREVYHAFQELPFFELSDPSVELSHGNFCLKPVIAPHDRDLFFDTSSHDYD FT DDDWFAGNEFCEGSFN" XX SQ Sequence 2935 BP; 750 A; 706 C; 640 G; 839 T; 0 other; ttttttttaa caagagcgta cggttcaacc cctgcctccc ctgttagcac caatcaaaac 60 tttcctttct tgttttgtat tactatctac tctatcatgg cttctacaga cgtcatcttt 120 tctctcgaga accttctgaa cggttcgtac ggtgttgtta ctcccgagga tgacgcttta 180 ttcaggcagc gttctatgta tgacgcttct gtgtctgatg actccatcat tactgacgat 240 gatgatgccg tcgcctttac gtgcgacgat gtttccgccg atggtcacgg cgagagtaac 300 ccttctgatc cgtgctctga ggacggctgc cagttcaacg ataacccggt gttgtacgac 360 atcgaggaat atcaagccct ctcggattca gaattatttg cgctttttga cactattgtg 420 aaacccataa agtttggatc gatattgacc ccagagttct cgagaccccg gttctataca 480 gccttgtctt tggctaaatc cgtgtccgtc atatcgaata gaccatccac ttttggcgag 540 gtttcccccg aactgattaa agccatatac atcggtgagc ccatcacctc ggtttcgggt 600 gcgcacgctg tcggagacac tcccgacgat tgtgaaggtt atgtctttgt cccttccgaa 660 ccaacgtcca attttgaacc tcctcctatc tgtgaagaat gtggtttggc tgcttatcat 720 tgtccacatt ttgatttcaa cgcgcttaaa gagactcaca acgatcatac tatcagtcac 780 gattacgaga tagagacctt aactggtgtg atcgatgatg ctacgttgtt gatgaacctc 840 gggcctttct tggttccgat ccagtgcgaa tactcaaaaa cctttgagtc taaacacgcg 900 acgaagcctt ccttggctcg tcccacagat agagtcgacg ttgatgttgt ccaagccgtt 960 tgtgacagca tgctccccac gcatgtcaac tatgacgaca cttatcacca ggtattcgtc 1020 gaagatagcg attattccgt tgacattgac cgaattcgtc tgaagcaatc cgatctgctt 1080 ccaaaagtgt cagacgacgg tcacatgcac cctgtcctta atacaggcag tgggcataag 1140 cgcgttggga ctcaaaaaga agtccacaca gccataaaga aacgtaatgc agacgtccca 1200 gagctcggcg actccgtaaa cctcacccgt ctcagtgaag cagtggccga gagatttatt 1260 tccagctata tgaacgttaa cgctctagtt tcgagtaact tcattaacgt cgttgggaat 1320 tttcacgctt acatgcagaa gtggcactcg tctctctcct acgatgacct acctgatttg 1380 aatgctgaga acttacaatt ttatgaacac atggtgaagt cggacgtgaa accttctgtg 1440 accgatactc taaacgttga caggcccgtg cctgctacta taacgtttca caagaaacag 1500 ataacctcac agttttcgcc gttatttaca gctctgtttg aacgtttcca acgctgctta 1560 cgctcgaagg tcgtgttgcc ggtgggaaaa atatcctccc tggaactaga agattttagt 1620 gttatcggaa aacactgcct agagatcgac ctatcgaagt ttgacaagtc ccaaggtgaa 1680 ctgcatctga tgattcaaga acaaattctg aaccgccttg gttgtcccgc tcacgtgtcc 1740 aaatggtggt gtgatttcca ccgacaatcg tacataaagg ataaaagagc gggtgttggg 1800 atggccctta gtttccagcg tcgtactggc gacgcgttca cgtattttgg aaacacactt 1860 gtcactatgg ctctgttctg ttggtgttat gacacagaac aatttgatag aatgctgttc 1920 tcgggtgatg attcactcgc tttctcctcc atcgctcccg tcggtgaccc ttcgaagttc 1980 accactctat tcaacatgga agcgaaagtc atggaaccat ctgttccgta tatatgttcc 2040 aagttcttgt tgactgatga attcggtcag accttttccg ttccagaccc tttaagggag 2100 atacaacgtt tgggctccaa gaaaatccca tattctgatg acgactcttt tctacacgct 2160 catttcatga gtttcgtaga taggctgaag tttctagaac gcatgtcaca attcaccata 2220 gatcaactga cgttgttcta tgagatgaaa tacaaaaaga gcggagctga tgcatcgctc 2280 gttctaggtg catttaagaa gtataccacg aacttcaacg cctataagga gctttatttc 2340 tctgatcgtc atcaatgtga ccttatcaac tcgttttcta ttggtgattt tgttataaag 2400 ttgtacgtgg aaaaacccgc aagaagataa atcgctctca tcatgtcgac ggtgaccttc 2460 gatcagatga tatcaaaact tgcccggtta caggaaaagc agtcggtgag acgagctcac 2520 cacaaacgga acaaaaagga gagaggtcac aaaactccca gcgaaagaaa gcgttctgag 2580 ttttggaaac gaaagtgtga agagagagag gtttatcacg cctttcagga gttaccattt 2640 tttgagttat cagaccctag tgttgaactt tcccatggta atttttgtct caaacccgtc 2700 atagcgcccc atgatcgaga ccttttcttt gatacctctt cacacgacta tgatgatgat 2760 gattggttcg ctggtaacga gttctgcgaa ggctcgttca actgatcatc cggggtggtc 2820 cgaagacgtt aaactacttc agaacgtttc tgattgtctg agttggtagt agtgctctaa 2880 actacctgaa gtcactaaac gcttatgcgg tgaacgggtt gtccatccag ctaag 2935 //