ID FM881899; SV 1; linear; genomic RNA; STD; VRL; 3350 BP. XX AC FM881899; XX DT 03-MAR-2009 (Rel. 100, Created) DT 03-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Gayfeather mild mottle virus, segment 1, 1a gene for 1a protein, genomic DE RNA, complete genome XX KW complete genome. XX OS Gayfeather mild mottle virus OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3350 RA Glover R.H.; RT ; RL Submitted (01-DEC-2008) to the INSDC. RL Glover R.H., Plant Health Group, Central Science Laboratory, Sand Hutton, RL York, YO41 1LZ, UNITED KINGDOM. XX RN [2] RA Adams I.P., Glover R.H., Monger W.A., Mumford R., Boonham N.; RT "Next generation sequencing and metagenomic analysis: a universal RT diagnostic tool in plant virology."; RL Unpublished. XX DR MD5; 77e77f876e4c0a1e2c801b0a11811beb. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3350 FT /organism="Gayfeather mild mottle virus" FT /segment="1" FT /host="Liatris spicata" FT /mol_type="genomic RNA" FT /country="Lithuania" FT /db_xref="taxon:578305" FT CDS 101..3067 FT /gene="1a" FT /product="1a protein" FT /db_xref="GOA:C0MNB2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C0MNB2" FT /protein_id="CAT02556.1" FT /translation="MATSAFNINNLVASNGDKGLMANALVDKIAHEQLEEQLQHQRRGR FT KVYIRNVLDVKDSEIIRSRYGGKYDLHLTQQEQAPHGLAGALRLCETLDCLDFFPNSGL FT RQDLVLDFGGSWVTHFLRGHNVHCCSPCLGVRDKMRHTERLMTMRKAILNDPQKFEGRQ FT PNFCTSPAADCDVKAHFAISIHGGYDMGFQGLCQAMHAHGTTILKGTMMFDGAMLFDTE FT GFIPDLKCKWKKIKPFTFEKEDQTSKVGKLNSVVFSAARVNTLIAFDFVDESTLSYVHE FT WENVKSFLTDQTYHYKGMTYGIERCLIQNGIMTYKIIATPGSCPPELIRHCIWFPSLKD FT YVGLKIPTSQDLVEWKTVRLPLSTLRETEEIAMRCYNDKKNWMEQFKVILGVLSSKSST FT IVINGMSMQSGERVEISDYHYIGFAILLHTKMKYEQLGKMYDMWNSGVIRKFFASLTRP FT LRVFLSGCVKTLFPTLRPRDEKEFLVKLSTFVTFNEVCQVDLNAEWDVVTAAAYTAEWA FT VEDGNTLAAERKKQADEKASEPVITDETEHQTSGDGLDASERTDLPDPMQSLSTQTKSP FT ETRIAQRATAMLEYTAYETQLHNNTVSNLARIWCSAGGDNKTNSLEGNLHLVFDTYFAV FT DPLVNVHFRNGQWMRRVPDGIHYSVGYNETGLGQKMEGELYIVNADCVIANSQPLAQST FT RGLLAPSGTISLVDGVAGCGKTTAIKKMFNPATDLIVTANKKSALDVRQALFNSTDSKE FT ATTFVRTADSVLLNDASDVSRVLIDEVVLLHFGQLCAVMAKLKAVRAICFGDSEQIAFN FT SRDASFDMRNSKLLPDEVSSADTTFRSPQDVVPIVKLMATKALPKGTHTKYTRWVSQSK FT VQRSVSTRSVASVTMVDLSEDRFYITMTQADKAALISRAKELNMSKRFVENNIKTTHES FT QGISEDHVTLVRLKTTKCDLFKKFEYCLVAVTRHKSTFRYEHVGDLPGDLIAMCLTRK" XX SQ Sequence 3350 BP; 910 A; 791 C; 777 G; 872 T; 0 other; ttttttttga caagagcgta cggttcaatc cctgcctccc ctgttagcac ccttgaaaaa 60 gactctcttc ttatcctttt ctagttacgt tcgaattcct atggccactt cagccttcaa 120 tatcaacaat ctcgtcgcct caaatggtga caaaggtctg atggcaaatg ccctcgttga 180 caaaatagct catgagcagc tggaggagca actccaacat caacgtagag gccgtaaggt 240 ctacatccga aatgttttgg atgtaaagga ctccgagatc atccggagtc ggtatggagg 300 taagtacgac ctccatctaa cccagcagga acaagctcct cacggtcttg ctggtgccct 360 ccgcttgtgt gaaacacttg attgtctaga cttcttccct aattcaggtc tgcggcagga 420 cctcgtctta gacttcggtg gtagttgggt cacacacttc ctccgcggac acaacgtaca 480 ttgctgctct ccttgcctag gtgttcgcga taaaatgcgg cacaccgaac gcttgatgac 540 gatgcgcaaa gccattctga acgatcctca aaagttcgaa ggcaggcaac cgaatttctg 600 tacatcaccg gctgccgatt gcgatgttaa agcccacttc gcgatctcaa tacatggagg 660 atacgacatg ggcttccaag gactgtgcca agctatgcat gctcacggca ccaccatttt 720 aaaagggaca atgatgtttg atggggcaat gctgttcgat accgagggtt ttattcctga 780 ccttaaatgc aaatggaaaa agataaaacc tttcactttc gagaaggaag accagacttc 840 aaaagttgga aaattaaact cagtcgtctt ctctgcagca cgcgttaata ctctcatagc 900 tttcgacttt gtcgatgaat ctaccctctc ttacgtgcac gagtgggaga atgtcaaatc 960 attccttacg gaccagacgt atcattataa agggatgact tatggcatag agagatgtct 1020 tatacaaaac ggtataatga cgtataaaat tatcgccaca cccgggagct gcccccctga 1080 attaatcaga cattgtatat ggtttccgtc cttgaaggat tacgttgggt tgaagatacc 1140 cacgtctcaa gatttggtcg aatggaaaac tgttcgtctc ccgctgtcaa ctctgcgaga 1200 gactgaagaa atagccatgc gttgttacaa tgataagaag aactggatgg aacaatttaa 1260 ggtaatcctg ggggtgttgt cctccaaatc cagtactatc gttattaatg gtatgtcgat 1320 gcaatcgggt gaacgtgtcg aaatatccga ctaccattac attggcttcg caattcttct 1380 acacaccaag atgaagtatg aacagttagg taagatgtac gatatgtgga acagcggtgt 1440 aattagaaaa tttttcgcga gcttaaccag accgttgaga gttttcctct ccggttgcgt 1500 gaaaaccctg tttcccacat tacgacccag agacgaaaaa gagttccttg tcaaactttc 1560 tacctttgtt acatttaacg aagtttgcca agtcgatttg aacgctgagt gggatgtcgt 1620 gaccgctgca gcatatacag ctgagtgggc cgttgaagat ggaaatacac ttgcggccga 1680 acgaaagaag caagcggatg aaaaagcgtc agaaccggtt ataaccgatg aaacggagca 1740 ccaaacctcc ggagatggac tcgacgcttc tgagcggaca gatcttccag accctatgca 1800 atccctgtct actcaaacta agtctcccga gactcgcata gcgcagcgtg caactgccat 1860 gctagagtac accgcttacg agacccaact tcataataac accgtgtcca acctagcgag 1920 gatatggtgc tcagccggtg gtgacaacaa gaccaattct ctcgagggca atttacatct 1980 tgtcttcgac acttacttcg ctgtcgatcc actcgtcaac gtccattttc gtaatgggca 2040 gtggatgcgt agagtccctg atgggatcca ctactcggtc ggttataatg aaaccggcct 2100 tggtcagaag atggaaggag aactctacat tgtgaacgca gactgtgtta tagcaaacag 2160 tcaaccttta gctcaatcta cccgaggttt gttggcccca agtgggacca ttagcctcgt 2220 ggatggcgtc gctgggtgtg gcaaaaccac tgccattaag aagatgttta atccagcgac 2280 cgatttgata gtcacggcga acaagaaatc cgccttggat gttaggcaag ctttgtttaa 2340 ctccaccgat tctaaggagg ccaccacctt cgttagaaca gctgattccg tgctattgaa 2400 tgacgcatca gatgtgtcca gggtattgat cgacgaggtt gtcctgttac atttcggaca 2460 gttgtgcgca gtgatggcaa aattgaaagc ggttagagct atatgttttg gagattctga 2520 acaaatcgct ttcaattcaa gggatgcctc attcgatatg agaaattcaa agttgcttcc 2580 cgatgaagta agttcggctg atactacgtt ccgtagccca caagacgtgg tccccatcgt 2640 taaattgatg gctacgaaag ctctcccgaa aggaacgcac actaagtaca ctcgatgggt 2700 gtctcagtcg aaagtccaac gttccgtttc cactagaagc gtagctagtg taaccatggt 2760 ggatttgagt gaagatcgat tctacatcac catgactcaa gccgacaaag cggctttgat 2820 atcgagagct aaggaactca atatgtctaa gagattcgtt gaaaataaca ttaaaaccac 2880 gcacgaatcc cagggcatat ctgaagatca tgttactttg gtaagactta aaaccacaaa 2940 atgcgatctg tttaagaaat tcgagtattg tttggtcgct gttactcgtc ataagtctac 3000 ctttaggtac gagcacgtcg gagatctccc cggcgatctg attgctatgt gcctgaccag 3060 aaagtaatcg cctttctggt cgtcctctga agttggtagt agtgctctaa actacctgaa 3120 gtcactaaac gcttatgcgg tgaacgggtt gtccatccag ctaacggcta aaatggtcag 3180 tcacgcctaa cggtgtgccg tctccctacc ggtgagatga ggtgcctttg aagtcctctc 3240 ctagacttct tcggaaggtg gtagtcttag actaccaccg tgcatgttac cacactgatg 3300 gtagcaagaa tgcaggcatc gcccgtggtt taccatgggt tctccataag 3350 //