ID FM877858; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC FM877858; XX DT 01-MAR-2010 (Rel. 104, Created) DT 01-MAR-2010 (Rel. 104, Last updated, Version 1) XX DE Chilli leaf curl India virus segment A, complete genome XX KW complete viral segment, complete genome. XX OS Chilli leaf curl India virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Kumar Y.; RT ; RL Submitted (26-NOV-2008) to the INSDC. RL Kumar Y., Floriculture Division, Institute of Himalayan Bioresource Tech., RL P.O. Box # 6, IHBT, Palampur, Distt. Kangra, Himachal Pradesh 176 061, RL INDIA. XX RN [2] RA Kumar Y., Walia Y., Bhardwaj P., Negi A., Hallan V., Zaidi A.A.; RT "A new species of begomovirus and its DNA beta causing severe chilli leaf RT curl disease in India"; RL Unpublished. XX DR MD5; 5b90fa3ce866850dd5571f4792b1bbdc. DR EuropePMC; PMC5377872; 28466050. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Chilli leaf curl India virus" FT /host="Capsicum sp." FT /mol_type="genomic DNA" FT /country="India:North India" FT /isolation_source="host leaf" FT /collected_by="Yogesh Kumar" FT /collection_date="22-Jun-2008" FT /identified_by="Yogesh Kumar" FT /db_xref="taxon:577124" FT CDS 145..510 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:D3UBS9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:D3UBS9" FT /protein_id="CAT00624.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLRLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSELRQPICEPCCCPHCPRHKGKSMGEQAHEP FT KAQDVQGVQKPRCSEGM" FT CDS 305..1075 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D3UBT0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D3UBT0" FT /protein_id="CAT00626.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPKMYRVYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1072..1476) FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:D3UBT1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D3UBT1" FT /protein_id="CAT00628.1" FT /translation="MDSRTEEPITAAQAENGVYTWEVPNPLYFKITEHHNRPFLMNKDI FT ITVQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFKTQVIKYLDNLGVISINN FT VVRAVDHVLWNVLHHVVYVEQSYSIKFNLY" FT CDS complement(1217..1624) FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:D3UBT2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D3UBT2" FT /protein_id="CAT00629.1" FT /translation="MQPSSPSKSHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHI FT DCHKYGFTHRGTHHCSSSREWRVYLGGSKSPVFQDNRAPQQAIPDEQRHHNRPSPVQPQ FT PEESVGDSQMFHSLPNLDDLTASDWSFLKGL" FT CDS complement(1554..2612) FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:D3UBT3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D3UBT3" FT /protein_id="CAT00631.1" FT /translation="MPRAHQFQVKAKNIFLTYPKCPIPKEQMLELLKNVSCPSDKLFIR FT VSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYI FT EKDGDYIDWGQFQVDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYH FT NLKTNLDRIFTPPVEVYVPPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRSWAIHNATFITLEEPL FT YSGTNQGPTQSC" FT CDS complement(2198..2455) FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D3UBT4" FT /protein_id="CAT00633.1" FT /translation="MGLCISMPSSNSKVNPNSETPDISMSLTLIHQPNSTQTSREQSPA FT PMSSPISRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQRP" XX SQ Sequence 2755 BP; 715 A; 562 C; 662 G; 816 T; 0 other; accggatggc cgcgattttt tttgtggccc ccacaacgcg ctaactgaca atgacatgtg 60 gaccaatgag aatcgtccct catggtctca ttgttttgtg gtccccccta taaattagtc 120 cccaaatatt ggtctttatc cacaatgtgg gaccctttag taaacgagtt tcccgaaacc 180 gttcacggtt ttaggtgtat gctagcagtt aaatacctgc ggttagtaga aaatacgtat 240 tccccagata ctctgggcta cgatttaatt agggatttga tttcagttat tagggctaga 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctgaac ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac 420 aaaggcaaga gcatgggcga acaggcccat gaaccgaaag cccaagatgt acagggtgta 480 cagaagccca gatgttccga ggggatgtga aggcccgtgt aaggtccagt catttgagtc 540 cagacatgat atccagcaca ttggtaaagt aatgtgtgtt agtgatgtta ctcgtggtat 600 tgggctgact caccgggttg gcaagaggtt ctgtgtgaag tccgtttatg ttttgggcaa 660 gatctggatg gacgagaaca tcaagactaa gaatcatacg aatagtgtta tgtttttcct 720 tgttagagat cgtaggcctg ttgataagcc tcaagatttt ggtgaggttt ttaacatgtt 780 tgataatgag cccagcacgg cgactgtgaa gaatgttcat cgtgataggt atcaggtgct 840 gagaaagtgg catgcaactg tcaccggtgg tcaatatgca tccaaggagc aggctctcgt 900 gaagaagttt attagggtta ataattatgt tgtgtataac cagcaagagg ctggcaagta 960 tgagaatcat actgagaatg cgttgatgtt gtatatggcg tgtacccacg cctctaaccc 1020 tgtgtatgct acattgaaga tacggatcta cttctatgat tcagtatcga attaataaag 1080 attaaatttt attgaatatg attgttctac atatacaaca tgatgtaata cattccataa 1140 tacatgatca actgctctaa ctacattgtt aatactgata actcctaaat tatctaaata 1200 cttaataact tgggtcttaa agacccttaa gaaacgacca gtcggaggct gtgaggtcat 1260 ccagattcgg aaggctatga aacatttgtg aatccccaac gctttcctca ggttgtggtt 1320 gaactggact tggacggtta tgatgtcttt gttcatcagg aatggcctgt tgtggtgctc 1380 tgttatcttg aaatacaggg gatttggaac ctcccaggta tacacgccat tctctgcttg 1440 agctgcagtg atgggttcct ctgtgcgtga atccatattt gtggcagtcg atgtgtacgt 1500 agtatgagca cccacagttt agatcaaccc tcttacgccg gatggctcta cgcttagcag 1560 ctctgtgttg gaccttgatt ggtacctgag tatagtggct cttcgagggt gatgaaggtt 1620 gcattatgta ttgcccacga cctcagtgct gagttctttt cctcatcgag gaattcttta 1680 tagctggaat tgggcccagg attgcagagg aagatagtgg gaatgccccc tttaatttga 1740 actggcttcc cgtacttggt gttgctttgc cagtcccttt gggcccccat gaactcttta 1800 aagtgcttta ggtagtgggg atctacgtca tcaatgacgt tgtaccaggc atcatttgaa 1860 tatatcttgg gactcagatc taaatggccg cataaataat tgtgtggtcc caaagacctg 1920 gcccacattg tcttgcctgt acgactatca ccctcaatga cgatactttt aggtctcaat 1980 ggccgcgcag cgggacccat cacattttca gaggcccatt cctctatggc ctctggaacc 2040 tgatcgaacg aagaagaaag aaatggggga acataaacct ccactggagg tgtaaaaatc 2100 ctatctaaat tagtttttaa attatgatat tgaaaaataa aatctttcgg gagtttctcc 2160 ctaataattg ctagagctgc ttcagctgaa cctgcattta gggcctctgc tgcagcatca 2220 ttagctgtct gttgacctcc tcgagcagat cgtccatcga cctgaaactg accccagtcg 2280 atgtaatcac cgtccttctc gatataggac ttgacatcgg agctggactt tgctccctgg 2340 aagtttgggt ggaattgggt tgatgtatta gggtgagtga catcgaaatg tctggggttt 2400 ctgaattggg atttaccttt gaattggatg agggcatgga tatgcagaga cccatcttgg 2460 tgtttttcct gtgacactct gataaataat ttatcagaag gacaagaaac gttttttagg 2520 agttcgagca tttgctcttt gggtattggg cattttggat aagtaaggaa gatatttttg 2580 gctttaactt ggaactgatg agcacgaggc ataatgaatt gggtgctctc taaaactctg 2640 tggaatgggg atctttgggt gcctatttat atcgagctcc caaatggcat tatcgtaatt 2700 tggggaaata attcaaaatc cccacgctcc aaaaagcggc catccgtata atatt 2755 //