ID FM876852; SV 1; circular; genomic DNA; STD; VRL; 2778 BP. XX AC FM876852; XX DT 20-JAN-2009 (Rel. 99, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 3) XX DE Pepper yellow vein Mali virus complete genome, isolate Burkina DE Faso-Bazega-hot pepper2-2008 XX KW complete genome. XX OS Pepper yellow vein Mali virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2778 RA Tiendrebeogo F.; RT ; RL Submitted (19-NOV-2008) to the INSDC. RL Tiendrebeogo F., Biochimie-Microbiologie, CRSBAN/UFR/SVT Universite de RL Ouagadougou, 03 BP 7131 Ouagadougou 03, BURKINA FASO. XX RN [2] RX DOI; 10.1007/s00705-010-0854-2. RX PUBMED; 21080204. RA Tiendrebeogo F., Lefeuvre P., Hoareau M., Traore V.S., Barro N., RA Perefarres F., Reynaud B., Traore A.S., Konate G., Lett J.M., Traore O.; RT "Molecular and biological characterization of pepper yellow vein Mali virus RT (PepYVMV) isolates associated with pepper yellow vein disease in Burkina RT Faso"; RL Arch. Virol. 156(3):483-487(2011). XX DR MD5; aa37625b4552c68368a4ada1daccde25. XX FH Key Location/Qualifiers FH FT source 1..2778 FT /organism="Pepper yellow vein Mali virus" FT /host="Capsicum frutescens" FT /strain="Mali" FT /isolate="Burkina Faso-Bazega-hot pepper2-2008" FT /mol_type="genomic DNA" FT /country="Burkina Faso" FT /lat_lon="11.58 N 1.26 W" FT /collected_by="Fidele Tiendrebeogo" FT /collection_date="Nov-2007" FT /db_xref="taxon:260378" FT CDS 139..489 FT /gene="V2" FT /product="movement protein (MP)" FT /db_xref="GOA:B8ZWN8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B8ZWN8" FT /protein_id="CAS97495.1" FT /translation="MWDPLLNEFPDSVHGFRCMLAIKYLQAVEESYEPNTLGHDLIRDL FT ICVIRARDYVEATRRYNHFHARLEGSSKAELRQPIQQPCCCPHCPRHKQASFMDLPAHV FT SKAQDVQNVQKP" FT CDS 299..1075 FT /gene="CP" FT /product="coat protein (CP)" FT /db_xref="GOA:B8ZWN9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B8ZWN9" FT /protein_id="CAS97496.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAVVPTVHGTNRRRSW FT TYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITH FT RVGKRFCIKCIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPQDFGQVFNMFDN FT EPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1072..1476) FT /gene="C3" FT /product="replication enhancer protein (REn)" FT /db_xref="GOA:B8ZWP0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B8ZWP0" FT /protein_id="CAS97497.1" FT /translation="MDSRTGEHITARQAKNGVFIWEINNPLYFTITNHDIRPFNMNQDI FT LTLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFRFQVLKYLNNLGVISINN FT VIRAVDHVLYVVLVNTISVMENHEIKFNLY" FT CDS complement(1217..1624) FT /gene="C2" FT /product="transcription activator protein (TrAP)" FT /db_xref="GOA:B8ZWP1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B8ZWP1" FT /protein_id="CAS97498.1" FT /translation="MQXSSPSTGHSTQVPIKVLHRRAKTKAIRRKRIDLDCGCSYYLHI FT DCINHGFTHRGTHHCSSSKEWRFYMGDKQSPLFHDNKSRHQTIQHEPRHPHTPNTIQSQ FT PQEGTGDSQMFSQLQGLDDLTASDWSFLKSL" FT CDS complement(1548..2612) FT /gene="C1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:B8ZWP2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B8ZWP2" FT /protein_id="CAS97499.1" FT /translation="MAPPKRFKINSKNYFLTFPKCSLTKEEALEQLLNLSTPTNKKFIK FT VCRELHTNGEPHLHVLMQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYV FT EKDGDTLEWGVFQVDGRSARGGCRNANDAAAEALNADSAEAAMAIIREKLPKEFIFQFH FT NLKNNLDRIFQEPPAPYVSPFLLSSFTQVPEELEEWVSENVMGAAARPWRPTSIVVEGD FT SRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRNW FT QSNTKYGKPIQIKGGIPCIFLCNPGPTSSYKEFLEEPKNYALKSWTLKNATFVTLNRPL FT YSSTNQGSPPQSQD" FT CDS complement(2198..2455) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B8ZWP3" FT /protein_id="CAS97500.1" FT /translation="MGNLISTCLCSSRGNTSARITDSSTWYPQPGQHISIQTFRELNQA FT PTSSPTSRRTETPLNGAYSRSTAEVLGEAAEMLTTQRQRP" XX SQ Sequence 2778 BP; 723 A; 569 C; 644 G; 841 T; 1 other; accggatggc cgcgcccccg aaaaagatat gggtcccacg cactaatttg tgtcgaccaa 60 tcatatcgca gcctgaaagg ctagatattt gttttttgtc tttatatact tgctcaccaa 120 gtatgggctt tatccatcat gtgggatcca cttttgaacg agtttcctga ctctgttcac 180 ggatttcgtt gtatgctcgc catcaaatat ttgcaggccg tggaggaaag ttacgagccc 240 aatactttgg gccacgattt aattagggat cttatttgtg ttattagggc tcgagactat 300 gtcgaagcga cccggcgata taatcatttc cacgcccgtc tcgaaggttc gtcgaaggct 360 gaacttcgac agcccataca gcagccgtgc tgttgtcccc actgtccacg gcacaaacag 420 gcgtcgttca tggacctacc ggcccatgta tcgaaagccc aggatgtaca gaatgttcag 480 aagccctgat gtgcctcgtg gttgtgaggg tccgtgtaag gttcagtcct acgaacagag 540 ggatgatgtt aagcacactg gtattgttcg ctgcgttagt gatgtcacac gtggccccgg 600 tattactcat cgtgtaggaa agagattttg tattaagtgt atatatattt tgggtaaaat 660 ctggatggat gaaaatatca agaagcagaa tcacactaac caggttatgt tttttttagt 720 ccgtgataga aggccctatg gaactagccc acaggacttt gggcaggttt ttaacatgtt 780 cgataatgag cccagtactg ctaccgtcaa gaatgatttg cgtgatcgtt atcaagtcct 840 caggaaattc catgctacgg tagttggtgg accttctggg atgaaagagc aggctttagt 900 caagaggttt tttagggtta acactcacgt cgtttacaat catcaagaag cagcgaaata 960 tgagaatcat actgagaatg cgttgttgtt gtatatggca tgtacacatg cctctaaccc 1020 tgtgtatgct acgcttaaga tacgcatcta tttttatgat gccgttacga attaataaag 1080 attgaatttt atttcatgat tttccataac ggaaatcgta tttacaagta ccacatataa 1140 cacatgatca accgctctaa tgacattatt gatagaaatt acacctaaat tattcaaata 1200 ctttaaaact tggaacctaa agactcttaa gaaaagacca gtctgaggcc gtaaggtcgt 1260 ccagaccttg aagttgagaa aacatttgtg aatccccagt gccctcctga ggttgtgatt 1320 gaatcgtatt tggagtgtga ggatgtcttg gttcatgttg aatggtctga tgtcgtgatt 1380 tgttatcgtg aaatagaggg gattgtttat ctcccatata aaaacgccat tctttgcttg 1440 acgagcagtg atgtgttccc ctgtgcgtga atccatggtt gatgcagtcg atgtggaggt 1500 agtatgaaca gccgcagtcg aggtctattc gcttacggcg aatggcttta gtcttggctc 1560 tgcggtggag aaccttgatt ggtacttgag tagagtggcc tgttgagggt gacgaargtt 1620 gcattcttga gtgtccagct cttgagtgcg taattcttcg gctcttctag gaattcttta 1680 tatgaggatg ttgggcctgg attgcagagg aagatacagg gaattccacc tttaatttga 1740 attggcttcc cgtactttgt gttgctttgc cagttcctct gggccccaaa aaattccttc 1800 caatgcttta gataatgcgg atcaacgtca tcaatgacgt tataccatgc atcattagaa 1860 taaacctttg gacttaagtc taaatgacca cataagtaat tatgtggccc taatgaccta 1920 gcccaaacag ttttgccggt acgactgtcg ccctctacta caatactagt aggcctccat 1980 ggccgcgcag cggcacccat gacattctca gacacccact cttcaagttc ttctggaact 2040 tgagtaaaag aagacaaaag aaaaggagaa acataaggag ccgggggctc ttgaaaaatc 2100 ctatctaaat tattctttaa attatgaaac tgaaaaataa attctttagg gagtttctcc 2160 ctaataatag ccatagcggc ttcagcggaa tctgcattta aggcctctgc cgctgcgtcg 2220 ttagcatttc ggcagcctcc cctagcactt cggccgtcga cctggaatac gccccattca 2280 agggtgtctc cgtccttctc gacgtaggac ttgacgtcgg agcttgattt agctccctga 2340 atgtttggat ggaaatgtgc tgacctggtt ggggatacca ggtcgaagaa tctgttattc 2400 gtgcactggt atttcccctc gaactgcata agcacgtgga gatgaggttc cccattcgtg 2460 tgcaactctc tgcaaacttt gatgaatttt ttatttgttg gggttgatag atttagaagt 2520 tgctctaacg cttcttcttt agttagggag cattttggga aagtgaggaa ataatttttg 2580 gaatttattt taaaacgctt tggaggagcc atttggtcaa tgtaccccga ttgaccgctc 2640 ttggcaactg gcgcctacaa tcggtgtaat ggggtacaat atatacttgt acccttaatg 2700 gcattatggt aatttggtaa aggtatatta ctttaatttg aatttcaaat ttgctttagc 2760 ggccatcctt ataatatt 2778 //