ID FM865413; SV 1; linear; genomic RNA; STD; VRL; 5673 BP. XX AC FM865413; XX DT 07-JUL-2009 (Rel. 101, Created) DT 17-FEB-2011 (Rel. 107, Last updated, Version 2) XX DE Wheat yellow dwarf virus-GPV, complete genome, genomic RNA XX KW complete genome. XX OS Wheat yellow dwarf virus-GPV OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5673 RA Adams M.J.; RT ; RL Submitted (29-OCT-2008) to the INSDC. RL Adams M.J., Plant Pathology and Microbiology, Rothamsted Research, West RL Common, Harpenden, Herts AL5 2JQ, UNITED KINGDOM. XX RN [2] RX DOI; 10.1007/s00705-009-0415-8. RX PUBMED; 19551470. RA Zhang W., Cheng Z., Xu L., Wu M., Waterhouse P., Zhou G., Li S.; RT "The complete nucleotide sequence of the barley yellow dwarf GPV isolate RT from China shows that it is a new member of the genus Polerovirus"; RL Arch. Virol. 154(7):1125-1128(2009). XX DR MD5; fde40dce88d715fc27fc4759d14114e8. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4558997; 26337051. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5673 FT /organism="Wheat yellow dwarf virus-GPV" FT /host="Triticum aestivum" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:572239" FT CDS 101..841 FT /transl_table=1 FT /product="hypothetical protein" FT /function="P0 protein" FT /note="ORF1" FT /db_xref="GOA:C6GYU5" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:C6GYU5" FT /protein_id="CAR95875.1" FT /translation="MFVATPAGRVLVQFEEHISVDCVLRSIFGLTSLFVRAYQDYSYGP FT HEICLFSVSLAYMLPVLFTGKSHVWRNGLSLPIRFHAHLLRWGLAIGYTPVVSTWKRTV FT HIDLCTMSSAASHRSQLQRLESSSFAAFLARHPHALFYGPQHFFKLLAVYLRCVEQRSP FT KLLWTSPVVSCLFVDRIPSTSFLDCVFGRNRLLLTGRFTDVTRYYNELDLQGVEVDFWY FT AAGISLHKTGADYLAGSYLQKILQ" FT CDS 228..2192 FT /transl_table=1 FT /product="hypothetical protein" FT /function="P1 protein" FT /function="replication" FT /note="ORF1" FT /db_xref="GOA:C6GYU6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:C6GYU6" FT /protein_id="CAR95876.1" FT /translation="MGHMKFAFSAFLWLTCCLSCLQGNHTYGAMDYHYPSDSMPIYSGG FT VWPLATPPLSPPGKEQCTSTCAPCPAQPLIDRSYKDLSQALSLRFWRDTRTLCSTALNT FT SSNYLQYTYDVLSNAARNCFGQVLWFLVYLWTGFLQQAFWTAFSVVTGYYLQVASLMSL FT AIITSWIYKALKWTFGTLPALACIKLVRTILRVLTCKRYFNEKSVDGYDSYSVPQTPPR FT KSVFTIRRKDKSHIGYATCITLFNKMNAVVTSEHNLEEGCEFYSPRTGRSIPIAEFTTL FT YTSSAMDISILTGPNNWESVLGCKGVFFTTYERLAQCPAQLYVKEGEDWRAHSAKVVGH FT FDNFAQVLSNTKPGFSGAGYFHGKTLVGVHKGHAGKEYNFNLMAPLPAIPGVTSPQYVV FT ESDPPQGLVFPTEVADQISSLVKQAYNKLNFKHDNTIHANDKQWKHGVAWADMEDESGN FT AKAAASAVPTAAASNLGGNSNTPAGGRSNKTVAPSSPKVQKAPAASRPTRTTPTMTRSS FT PDATATSLDTGACTGPSQQEIMNNLMNLLVQKIDVSKIEKSVIDLLASKALKKPRGKRG FT SNKRHNNGDSSSPTSTPGKYQPPNKRSQVSNGSDNSPHSTTHDRKQHQRGGNYSVPNTL FT SWVRKLPVSDGPKSGHPQN" FT CDS <1598..3463 FT /codon_start=1 FT /transl_table=1 FT /product="hypothetical protein" FT /function="P2 RNA-dependent RNA polymerase" FT /note="ORF2" FT /note="expressed as a fusion protein with ORF1 by -1 FT ribosomal frameshift" FT /db_xref="GOA:C6GYU7" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C6GYU7" FT /protein_id="CAR95877.1" FT /translation="KRQGGSVRRTNRSSEQPRRKLKHPRRRTVQQDCCSFFTKGTEGPR FT CIPTHTHNTDNDPKLPRCYCNIPGHGCVYWTITARNNEQFNEFAGPEDRCVENREIGYR FT LVGLESSQETTRQARFKQEAQQWRQFFADIYTWEVPTAEQAVPGFQRVGQLPPQYYPRP FT KTTSAWGELLCAEHPLLGEKTAGFGWPQVGASAELTSLRLQVARWIERSDSATVPSDAA FT RENVINRTVRAYANCKTNTPRCLRDKLNWEDFKVDFLEAISSLQLDAGVGIPMITAGLP FT THRGWVEDPDLLPVLAQLTFDRLLTMSKSSLEARSPEQLVKENICDPIRLFVKQEPHKQ FT SKLDEGRYRLIMSVSLVDQLVARVLFQRQNKSEIALWSAIPSKPGFGLSTEDQVQKFMD FT VLAGTVGTSAEEVCANWRNLLVPTDCSGFDWSVSDWMLADDMEVRNRLTIDCNELTRHL FT RAVWLQGISNSILCLSDGTMLAQTRPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAM FT GDDALEAPDSDLSRYKSLGFKVEVSGELEFCSHILKSPTLAIPVNANKMLYRLIHGYNP FT ECGNAEVISNYLNAACSVLHELRHDQELCAQLQKWLISDVTTKLT" FT CDS 3649..5580 FT /transl_table=1 FT /transl_except=(pos:4252..4254,aa:OTHER) FT /product="hypothetical protein" FT /function="coat protein readthrough" FT /note="ORF5" FT /db_xref="GOA:C6GYU8" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:C6GYU8" FT /protein_id="CAR95878.1" FT /translation="MSTVALRNGNGPRRRRVSRRRVVARTQPMVMVATNGQPRRRRRRR FT PAGRGRRRVPRSTGGSHGETFVFAKDSLKGNSSGSLTFGPSLSEYPAFKDGILKAYHEY FT KITNCVLQFITEASSTAAGSISYELGPHCKSSSLTSTINKFSITKTGARSFPAKMINGL FT EWVANDTDQFRILYKGNGDANTAGSFRITMKVLFQNPKXVDAEPGPSPGPSPTPPPPPP FT EPTPPVEERFIVYTGVAHTTILAQSTDDAISLRNIPDQRFRYIENENFYWFNIEAQWYS FT NTNIKAVPMFYFPIPEGQWSVEISTEGYQATSSTTDPNKGRVDGLMAYDDSSEGWNIGI FT GNNVEITNNKADNTWKYGHPNLEINSCHFKQQQCLERDGVISCHVKTIGPSATIFVVAP FT PVQKLSKYNYAVSYGAWTERDMEIGLITVTLDEKRDSGSARKKILRSGLPEATNFTLAA FT HPEKENFGIQTSESPLAPAISPKAQLLTLSDSDSEDDPLSASPDVGFGGTRLLVDTDIK FT TIPDPSVAEAFVNSAHVGEDPWADVRAFKSAQRPPRGPSSVASGSISGGSLRGTLRPAS FT KPARETPYERDENKTTRRQKSRFSFGGGRSLKSHRAETVNLPKQAKENALDHPSHDVKR FT RIKTLPPS" FT CDS 3649..4254 FT /transl_table=1 FT /product="hypothetical protein" FT /function="coat protein" FT /note="ORF3" FT /db_xref="GOA:C6GYU9" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:C6GYU9" FT /protein_id="CAR95879.1" FT /translation="MSTVALRNGNGPRRRRVSRRRVVARTQPMVMVATNGQPRRRRRRR FT PAGRGRRRVPRSTGGSHGETFVFAKDSLKGNSSGSLTFGPSLSEYPAFKDGILKAYHEY FT KITNCVLQFITEASSTAAGSISYELGPHCKSSSLTSTINKFSITKTGARSFPAKMINGL FT EWVANDTDQFRILYKGNGDANTAGSFRITMKVLFQNPK" FT CDS 3671..4126 FT /transl_table=1 FT /product="hypothetical protein" FT /function="P4" FT /function="cell-to-cell movement" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:C6GYV0" FT /protein_id="CAR95880.1" FT /translation="MAMVRVDDESLGGGLLQERSQWLWSLPTASPGEEDADDQLVVGEE FT EFQDQQEEAMARHSFSQRIHSRATPLEVSPSGRLYQSIRHSKMEYSRPTMNIRSQIVSY FT SSSPRPLQPQPAPSLMSWAPIASHLHSRQRSISSQSPKLVRGASQRR" XX SQ Sequence 5673 BP; 1473 A; 1499 C; 1308 G; 1393 T; 0 other; acgaagaaaa cataggggga aatttgagac ttgagctctt tcccgctttc tcttcctcgg 60 tgaaatctct actacagaca ttcgcactcg ttataagcgc atgtttgtgg ccacacctgc 120 tggaagagtt ttagtccaat tcgaagagca catcagcgtt gactgtgtcc ttcgttcaat 180 ctttggactc acttctctct tcgttcgagc gtaccaggac tatagctatg ggccacatga 240 aatttgcctt ttcagcgttt ctctggctta catgctgcct gtcctgttta cagggaaatc 300 acacgtatgg cgcaatggat tatcattacc catcagattc catgcccatc tactcaggtg 360 gggtttggcc attggctaca cccccgttgt ctccacctgg aaaagaacag tgcacatcga 420 cttgtgcacc atgtccagcg cagcctctca tagatcgcag ttacaaagac ttgagtcaag 480 ctctttcgct gcgtttttgg cgcgacaccc gcacgctctg ttctacggcc ctcaacactt 540 cttcaaacta cttgcagtat acttacgatg tgttgagcaa cgcagcccga aattgctttg 600 gacaagtcct gtggtttctt gtctatttgt ggacaggatt ccttcaacaa gctttctgga 660 ctgcgttttc ggtcgtaacc ggttactact tacaggtcgc ttcactgatg tcactcgcta 720 ttataacgag ttggatttac aaggcgttga agtggacttt tggtacgctg ccggcattag 780 cttgcataaa actggtgcgg actatcttgc gggttcttac ttgcaaaaga tacttcaatg 840 agaaatctgt cgatggatac gacagctatt cagtccccca aacccctcct cgaaaaagcg 900 ttttcacgat ccgccgaaaa gacaaatcgc atattggtta cgccacatgc attactcttt 960 tcaacaaaat gaacgctgtt gtcactagtg agcacaacct tgaggagggt tgcgagtttt 1020 attctccccg tactgggcga tcgatcccaa tcgccgagtt cactacccta tacacgagct 1080 ctgctatgga tatttcaatc ctaacagggc ctaacaattg ggagtcagta ctggggtgta 1140 aaggcgtctt tttcaccaca tatgaacgct tggctcagtg tccagctcaa ttatatgtca 1200 aagaaggtga agattggcgc gctcactcag ctaaagttgt cggccatttc gataactttg 1260 ctcaagtctt gtccaacact aagcctggct tttctggggc cggttatttt catggcaaga 1320 ctttggtggg tgtccataaa gggcacgctg gtaaggaata caacttcaat ctgatggctc 1380 ctttaccagc cattcccggt gtcacatctc ctcagtacgt cgttgagtct gacccccctc 1440 aagggttggt ctttccaact gaagttgctg accaaatttc atctttggtt aagcaagcgt 1500 acaacaagct taacttcaaa cacgacaaca ccatccatgc taatgataaa caatggaaac 1560 acggtgtagc gtgggctgat atggaggatg agtcgggaaa cgccaaggcg gcagcgtccg 1620 ccgtaccaac cgcagcagcg agcaacctcg gcggaaactc aaacaccccc gcaggcggac 1680 ggtccaacaa gactgttgct ccttcttcac caaaggtaca gaaggccccc gctgcatccc 1740 gacccacacg cacaacaccg acaatgaccc gaagctcccc cgatgctact gcaacatccc 1800 tggacacggg tgcgtgtact ggaccatcac agcaagaaat aatgaacaat ttaatgaatt 1860 tgctggtcca gaagatagat gtgtcgaaaa tcgagaaatc ggttatcgac ttgttggcct 1920 cgaaagctct caagaaacca cgcggcaagc gcggttcaaa caagaggcac aacaatggcg 1980 acagttcttc gccgacatct acacctggga agtaccaacc gccgaacaag cggtcccagg 2040 tttccaacgg gtcggacaac tccccccaca gtactaccca cgaccgaaaa caacatcagc 2100 gtggggggaa ctactctgtg ccgaacaccc tctcttgggt gagaaaactg ccggtttcgg 2160 atggccccaa gtcggggcat ccgcagaact gacgtccctt cggctgcaag tggctcgctg 2220 gatcgaacgt tccgattcag ctactgtccc atcagacgcc gccagagaga acgtgatcaa 2280 ccgcaccgtg cgggcgtatg ccaattgcaa aactaacacg ccacggtgct tacgagataa 2340 gttgaactgg gaggacttca aggttgactt cttagaagcc atttcttccc tccagctcga 2400 cgctggcgta ggtataccta tgataacagc ggggctcccc acccatcgcg ggtgggttga 2460 agacccagat cttttgccag ttttagctca acttaccttt gaccgcctac ttacgatgtc 2520 aaagtcaagt ttggaagctc gctctccgga gcaactcgta aaagagaaca tctgcgaccc 2580 aatacggctc ttcgttaaac aagagcctca taagcagagt aagcttgatg agggccgcta 2640 ccgcctcatc atgtctgttt ctcttgttga tcaattggta gcccgggttt tgtttcaaag 2700 acaaaacaaa tccgaaattg cattgtggag tgcaattccg tcaaagcccg gttttggatt 2760 atccaccgag gaccaagttc agaagtttat ggatgtcctc gccggcactg ttggtacgag 2820 tgccgaggaa gtttgcgcca attggcgcaa ccttttggtt cccacggact gctccggttt 2880 cgactggtcg gtctctgatt ggatgctcgc agatgatatg gaggtgcgaa accgcctcac 2940 aatcgattgc aatgagctca ccagacacct tcgcgctgtc tggttacaag gcatttcaaa 3000 ctctatctta tgcctttcag acggaactat gctcgctcag acccgtccag gagttcaaaa 3060 gagtggatcg tataacacgt cctcaactaa ttcacggatt cgggtcatgg ctgcctatca 3120 ttgtggcgcc tcatgggcga ttgctatggg cgatgatgcc cttgaagctc cagactcaga 3180 tttgtcgaga tacaaaagtt tgggcttcaa agtcgaggta agtggagagt tggaattttg 3240 ctctcatatt ctgaaaagcc ccaccctcgc cattccggtc aatgcaaaca aaatgttgta 3300 ccgcctgatc cacggataca acccggaatg tggtaacgca gaggtaatct cgaattacct 3360 taatgcagct tgctcagtgc tgcatgagct ccgacacgat caggagcttt gcgctcaact 3420 tcaaaagtgg ttgatatctg acgtcaccac aaaattaacc tgagcacaaa actagccgga 3480 cacacgtaag ttgcgagtac cggaagttca gccttacaca taagcccaac attgatttcc 3540 atttgttagc gggatttgca atcggattta tatcctcaat ccccatctca attgttggag 3600 tttatttagt ctaccttaag gtctcgaccc acgttcgtga aatagttaat gagtacggtc 3660 gcccttagaa atggcaatgg tccgcgtaga cgacgagtct ctcggaggcg ggttgttgca 3720 agaacgcagc caatggttat ggtcgctacc aacggccagc ccaggcgaag aagacgccga 3780 cgaccagctg gtcgtgggcg aagaagagtt ccaagatcaa caggaggaag ccatggcgag 3840 acattcgttt tcgcaaagga ttcactcaag ggcaactcct ctggaagtct caccttcggg 3900 ccgtctttat cagagtatcc ggcattcaaa gatggaatac tcaaggccta ccatgaatat 3960 aagatcacaa attgtgtctt acagttcatc accgaggcct cttcaaccgc agccggctcc 4020 atctcttatg agttgggccc ccattgcaag tcatcttcac tcacgtcaac gatcaataag 4080 ttctcaatca ccaaaactgg tgcgaggagc ttcccagcga agatgattaa cgggttagag 4140 tgggtcgcca acgacacgga tcaattccgc atcctttaca aaggtaacgg cgacgccaac 4200 accgcaggtt ccttccgcat cacgatgaag gtcctgtttc aaaacccgaa ataggtagac 4260 gcggaacccg gtcctagtcc aggaccatca cccactccac ctccaccacc ccccgaacct 4320 acaccgcctg ttgaggaacg ttttatcgtt tataccggtg tagcgcacac tactattctc 4380 gctcaatcaa ctgacgatgc tatatctcta cgcaatatcc ctgaccaaag gtttaggtac 4440 attgagaatg aaaacttcta ttggttcaac attgaagctc aatggtactc taacaccaac 4500 atcaaagcag taccgatgtt ctactttccc atccctgaag ggcaatggtc agtagaaata 4560 tcgactgaag ggtatcaggc tacttctagt accactgacc ccaacaaggg tcgtgtggat 4620 ggccttatgg cgtatgatga ttcaagcgag gggtggaata taggcattgg gaacaacgtt 4680 gaaataacga acaataaagc tgacaacaca tggaaatatg gtcaccctaa tttggagatc 4740 aattcctgtc actttaaaca acaacaatgc ctagagcgtg atggagttat ttcctgtcat 4800 gtcaagacta ttggcccgag cgcgactatt tttgtcgtag ctcctcccgt tcaaaagctc 4860 tccaaataca actacgcagt atcatatgga gcttggaccg aacgcgacat ggaaattggg 4920 ttgattacag ttacgcttga cgaaaagcgt gattcgggtt ccgcccgcaa gaaaatcctc 4980 cggtctggac taccggaggc taccaatttt acgttggcag cgcacccgga gaaggaaaac 5040 ttcggtatac aaacatctga atccccgttg gctccggcta tcagcccaaa agcgcagctc 5100 ctaacccttt cggattcgga ctcagaagat gatccgcttt cagcctcacc agacgtgggc 5160 ttcggcggaa ctcgtctttt agttgatact gatatcaaaa ccatacccga tcccagcgtt 5220 gcggaggcct tcgtgaacag tgctcacgtg ggtgaggatc catgggctga tgttcgagcg 5280 tttaagagcg ctcaacgacc accccgtgga ccttcttcag tcgctagcgg ctccatttct 5340 ggaggctcgc ttcgaggaac gcttcgcccg gcttctaagc ctgcgcgtga aaccccttat 5400 gagagagacg aaaacaaaac aactcgtcgt cagaaatcac gtttctcatt tggtggtggc 5460 cgttccctaa agtctcaccg agcagagact gtaaacttgc ccaaacaggc gaaggaaaat 5520 gccttagatc acccgtccca cgacgttaaa agaaggatta agacccttcc cccttcctga 5580 ttcaacaacc ttgttccagg ttaggttctt gtctttaaaa gaaaaagtta ccttagaaat 5640 tccgatttct aaggggcttt gtaaatcaaa aag 5673 //