ID FM242699; SV 1; linear; genomic RNA; STD; VRL; 4152 BP. XX AC FM242699; XX DT 12-OCT-2009 (Rel. 102, Created) DT 28-AUG-2015 (Rel. 125, Last updated, Version 2) XX DE Tobacco bushy top virus complete genome, isolate YLLi XX KW complete genome. XX OS Tobacco bushy top virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-4152 RA Li F.; RT ; RL Submitted (10-OCT-2008) to the INSDC. RL Li F., Department of Phytopathology, Yunnan Agricultural University, Key RL Laboratory for Plant Pathology of Yunnan Province, Kunming, 650201, Yunnan RL Province, CHINA. XX RN [2] RA Li F., Wei W., Chen H.R., Mo X.H.; RT "Complete nucleotide sequence and genome organization of YLLi isolate of RT tobacco bushy top virus"; RL Unpublished. XX DR MD5; e6b4db5569e47207f4d68c90c8ba49a2. DR EuropePMC; PMC4514990; 26209518. XX FH Key Location/Qualifiers FH FT source 1..4152 FT /organism="Tobacco bushy top virus" FT /isolate="YLLi" FT /mol_type="genomic RNA" FT /country="China:Yunnan, Baoshan, Longling" FT /db_xref="taxon:184020" FT 5'UTR 1..10 FT CDS join(11..952,952..2607) FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="ORF1-ORF2" FT /db_xref="GOA:C9WX97" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C9WX97" FT /protein_id="CAR85733.2" FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAAKCPPEDPTPASPQEPQPV FT PLAESSECSSQDAERDALDEIWGLPTPVPHPLPKYFERRYQALARTCQKDYSNWQIVPY FT TGGPRELREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRFTKMAGEVKGRLSAPTRE FT PSPTCYGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFLLGDVVARRGVETKVKTKIHPKIRVL FT RAARPRPVERVSYQIDVVRPCADFGVHNNSLNNLVRGVNERVFYTDHKRKEPRRPSAGS FT FDKINISEIKAFRVQPWTLEEVVESYTGSQRVRYGQAVESLAVTPLSRNDARVKTFVKA FT EKINFTAKPDPAPRVIQPRDPRFNACFAKYTKPLEPLLYKQLGKLYQFPCIAKGFNAVE FT TGEIVAKKWKCFSDPVCVGLDASRFDQHVSCDALQFTHSVYKRFVKGREVNKLLSWMYK FT NHALGSAKDGFVKYEVEGCRMSGDMDTALGNCVLMVLMTRQLCKNLSIPHELMNNGDDC FT IVIFDRQYLSTFQDAVEPWFRELGFTMKVEEPVYHLERVDFCQTRPVYDGKKWRMVRHI FT SSIAKDCCSVIDWEQLPAWWNAIGECGIAVAGGIPIHNSFLRWLLRSGESNPDLLKHGA FT WKNEGLAWYRMGMDLSHERHVSDEARASFHTAFGIEPSMQVALEQIYDSLPAPTIGGKR FT ARVCKPGEMVLVDSLPPRHFNNYFQDVGIGGSSSDYVVPGAHEFEPGTLWTQC" FT CDS 11..958 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:C9WX96" FT /protein_id="CAR85732.1" FT /translation="MEFINKIKQLLAMNFKPSKGVMSREELREAFDPTWELLITQARVT FT TEVSRQCEDWYTLAVPTTYRLPELAVEEAVREKNIAREVAAKCPPEDPTPASPQEPQPV FT PLAESSECSSQDAERDALDEIWGLPTPVPHPLPKYFERRYQALARTCQKDYSNWQIVPY FT TGGPRELREEDVLPMATGVIPLPPPPPKASVIGAVLGLITRFTKMAGEVKGRLSAPTRE FT PSPTCYGLEQVAGEPMGYMNAHSVAMELRARYGVQPATAANLQLGNRVAREILEKQCGA FT TRDMVFILGHLATTLWFTPTMVDLALQCGPKDFC" FT CDS 2757..3470 FT /product="hypothetical protein" FT /note="ORF3" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:C9WX98" FT /protein_id="CAR85734.1" FT /translation="MSTIINVNTHPQGRYERGAAQRSIRGSDVKGARGIKPRRTNPPPG FT RKQGGNDPTAATQKSRKNRQRPETVPPHKTHGGTFIHREDCGGVHAPHTGRCWRGGRNL FT GPRQHATTPKQRWAPRKISDERRAQVDSILSPLLDTLKLSSEGGAPELLHCIGVLRREL FT RRRREPVQPVHNVGAEDRVRSAQLSDEAPQSDADLQTSGEGQSVLPNPNSGGTEKCNVE FT SVCNNCDRAPTTNKW" FT CDS 2773..3507 FT /product="hypothetical protein" FT /note="ORF4" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:C9WX99" FT /protein_id="CAR85735.1" FT /translation="MSTLIHKADTKEELLNALYGEVTLRELEESNLGVLTPHRAENKVV FT MTPLLPPRSQGRIASVLKRFRPTKHTGGLLFIEKIVVVFTPHIPDDAGGEVEIWVHDNM FT LPHLNSVGPRVRFPMSGGPRLIAFYPPYSIPLSCQVRGAPRSYFIVSEYSGVNFVAGAS FT PFSLYIMWEPKIECVAHNYLMRPPKAMPICRHLVKDSLSSLTLTQGALKSAMSNRYATT FT ATGLPPPTSGEQDMEVVSHPPG" FT 3'UTR 3508..4152 XX SQ Sequence 4152 BP; 1000 A; 1084 C; 1203 G; 865 T; 0 other; aggttacgat atggagttca tcaacaagat aaagcaattg ttggcaatga atttcaagcc 60 ctctaagggc gtaatgtctc gggaggagct ccgtgaagct ttcgatccca cttgggagct 120 cctcatcaca caggctcgtg tcaccactga ggtgtcacgc cagtgtgagg attggtacac 180 tctagctgta cccaccacct accgcttgcc agagttggcg gtagaagagg ctgtgcgtga 240 aaagaacata gcgcgcgagg tggcggccaa gtgcccccct gaggacccga ctcctgcttc 300 cccgcaagag ccacagcctg tccccttggc ggagagctcc gagtgctcaa gccaggatgc 360 cgagcgtgat gcgctcgatg agatatgggg gctccccact cccgtgccac atcctctgcc 420 caagtacttc gagcggcgtt accaggcgct ggctcggacc tgccagaagg actactccaa 480 ctggcagatt gtaccctaca cgggtgggcc acgcgagcta agagaggagg acgtgctacc 540 aatggccacg ggggtcatac ccttgccacc acccccccct aaggcttctg tgattggagc 600 agtcttgggg ctgattaccc gcttcaccaa gatggcgggg gaagtgaagg gcaggctgag 660 cgcaccgacg cgggagccct cgcccacttg ctacggtcta gagcaggtgg ctggtgagcc 720 catgggctac atgaatgcac actctgtagc catggagttg cgggctaggt acggagttca 780 gcccgccaca gctgcgaact tgcagctcgg aaaccgggtg gccagggaaa tcctggaaaa 840 acagtgcggg gccacccgtg acatggtgtt catactcggg cacctcgcca ccaccttgtg 900 gttcaccccc actatggtgg acttggccct tcaatgtggg cccaaggatt tttgctaggg 960 gatgtggtcg ctcggagggg tgtagaaact aaagtgaaga cgaaaatcca ccccaaaatc 1020 cgagtgctta gggcggcccg tccccggccc gtagaaagag tgtcgtacca aatcgacgtg 1080 gtgcggccct gtgctgactt tggagtccac aacaactccc tcaacaattt agtgcgaggg 1140 gttaacgagc gggtgttcta cacagaccac aagaggaaag agccccgcag accttcagct 1200 ggtagttttg acaagatcaa catcagcgaa ataaaagcgt tcagagtcca gccgtggact 1260 ctcgaggagg tcgttgagag ctacacgggt agccagaggg tgcggtatgg acaagctgtt 1320 gaatccttag cagtaacgcc cctctcacga aacgacgccc gggtcaaaac atttgtaaag 1380 gcggaaaaga taaacttcac cgccaagcct gacccggccc ctcgtgtgat ccagccgcgg 1440 gatccaaggt tcaatgcctg ctttgccaaa tacacaaagc ccttggaacc cctactatat 1500 aagcagctgg gtaagcttta ccagttcccg tgcatcgcta aaggctttaa cgccgtggag 1560 accggagaga tagtagccaa gaagtggaag tgcttcagtg accctgtctg tgtgggttta 1620 gatgcctccc ggtttgacca gcatgtgtca tgcgatgcac tacagttcac ccatagcgtg 1680 tacaaacggt tcgtgaaggg cagggaagtg aacaagttgc tttcctggat gtacaagaac 1740 cacgctttgg gaagtgcgaa ggacggattc gtcaagtacg aggtggaagg ttgtcggatg 1800 agtggggaca tggatacagc cttagggaat tgtgtcctga tggttctcat gactaggcag 1860 ctatgcaaga acctctccat accgcacgag ctgatgaaca acggcgacga ctgcatagtt 1920 atatttgaca ggcagtacct gtccaccttt caggatgcag ttgagccttg gtttagggaa 1980 ctagggttta caatgaaggt cgaggagcca gtctaccatc tcgaacgagt agacttttgc 2040 cagacccgtc ccgtgtatga cggcaagaag tggagaatgg tcaggcatat ctcaagtata 2100 gcgaaggatt gctgttcagt cattgactgg gaacagttac cggcttggtg gaacgccatt 2160 ggagaatgtg gcattgccgt ggctggtggt atacccatac acaacagctt cttgagatgg 2220 ctcctgagat caggagagag caaccctgat ctcctgaagc atggcgcatg gaaaaatgag 2280 ggcctagcgt ggtaccggat gggcatggac ctatcccatg agagacacgt tagtgatgaa 2340 gcgcgcgcca gcttccacac tgcctttgga atcgaaccat ccatgcaggt cgcattagag 2400 cagatctatg actcattgcc tgctcccacc attggtggga aacgagccag agtgtgtaaa 2460 cctggtgaaa tggtattggt tgattcactc ccgccgcggc actttaataa ttacttccag 2520 gatgttggaa taggggggag tagcagtgac tacgttgtcc cgggggccca tgagttcgaa 2580 ccggggacgt tgtggacaca atgctagtcg atcaagttag ccaggcatat ggttgcaagc 2640 gctggggact tagtccataa agccactggt aaagagcctc cagtaggcag gcccgccttg 2700 atgagtatca acgagtggac acccgggtag ccgcggacaa tgcccgacgg gtttcaatgt 2760 ctacgatcat aaatgtcaac actcatccac aaggcagata cgaaagagga gctgctcaac 2820 gctctatacg gggaagtgac gttaagggag ctcgaggaat caaacctcgg cgtactaacc 2880 ccccaccggg ccgaaaacaa ggtggtaatg accccactgc tgccacccag aagtcaagga 2940 agaatcgcca gcgtcctgaa acggttccgc cccacaaaac acacgggggg acttttattc 3000 atagagaaga ttgtggtggt gttcacgccc cacataccgg acgatgctgg cggggaggta 3060 gaaatctggg tccacgacaa catgctacca cacctaaaca gcgttgggcc ccgcgtaaga 3120 tttccgatga gcggagggcc caggttgata gcattttatc ccccctactc gataccctta 3180 agttgtcaag tgaggggggc gccccggagc tacttcattg tatcggagta ctccggcgtg 3240 aacttcgtcg caggcgcgag cccgttcagc ctgtacataa tgtgggagcc gaagatagag 3300 tgcgtagcgc acaactatct gatgaggccc cccaaagcga tgccgatttg cagacatctg 3360 gtgaaggaca gtctgtcctc cctaacccta actcaggggg cactgaaaag tgcaatgtcg 3420 aatcggtatg caacaactgc gaccgggctc ccaccaccaa caagtggtga gcaggatatg 3480 gaggtagtgt cccatcctcc aggctaaatt ggacacaaaa cggagctaga tttagtgttg 3540 caattgctag accgttagcc actacgctag acagtgcgac aactgaggtc gtctatgacc 3600 cacagggtgc catcctgtgc aatttctaac ccttggcaag ggtgatccta gaggacgcgg 3660 gcattgactt gcctggggat gcttctagtt acataccgga gtggttgata gacctctgtg 3720 taaggaaaca ggtgtgagac cgggtcctgg gaaacaggct gggatggtcc cgtaagttcg 3780 ggcggtgccc ttctggggta accccaccgc cgacgtatca cctcacacgc tgttgaccga 3840 caagccgggg tattggaacc gcaccactct ggaggttccc tctccttatg aggtggaggt 3900 acagcacgcc ttaagtgtct gcgatccggt gttcacgtgc cggtggtccc cctagttaac 3960 gtggtgccac agtctgtggt aggggcagct ggtcggattc cagcataaac caagtagcaa 4020 gtggacgttg ctacctcgag cctagagtca tgggcccgca tcgacgtttg cggtaactca 4080 cagcgggcga taatagctgt tgagaatgtc ggttcctgac ttagcgggag atgagcactt 4140 tctctcgcgc cc 4152 //