ID FM212661; SV 1; circular; genomic DNA; STD; VRL; 2793 BP. XX AC FM212661; XX DT 10-JAN-2009 (Rel. 98, Created) DT 10-JAN-2009 (Rel. 98, Last updated, Version 1) XX DE Tomato yellow leaf curl Mali virus complete genome, isolate DE Cameroon:Gashiga:Pepper2:2007 XX KW complete genome. XX OS Tomato yellow leaf curl Mali virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2793 RA Lett J.M.; RT ; RL Submitted (01-OCT-2008) to the INSDC. RL Lett J.M., Bios, CIRAD-UMR PVBMT-3P, 7 Chemin de l'IRAT / Ligne Paradis, RL 97410 Saint Pierre / Ile de La Reunion, FRANCE. XX RN [2] RA Lett J.M., Lefeuvre P., Couston L., Hoareau M., Thierry M., Reynaud B., RA Martin D.P., Varsani A.; RT "Complete genomic sequences of Tomato yellow leaf curl Mali virus isolates RT infecting tomato and pepper from the North Province of Cameroon"; RL Unpublished. XX DR MD5; db698e6940730bcf2a6b6d73bbdd11fe. XX FH Key Location/Qualifiers FH FT source 1..2793 FT /organism="Tomato yellow leaf curl Mali virus" FT /strain="Mali" FT /isolate="Cameroon:Gashiga:Pepper2:2007" FT /mol_type="genomic DNA" FT /country="Cameroon:North Province" FT /lat_lon="5.24 N 13.69 E" FT /isolation_source="Capsicum annum (Sweet pepper)" FT /collected_by="Laurent Couston" FT /collection_date="Feb-2007" FT /db_xref="taxon:260377" FT CDS 146..496 FT /gene="V2" FT /product="Movement protein (MP)" FT /db_xref="GOA:Q6RCV6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6RCV6" FT /protein_id="CAR82100.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDVQAHV FT PKAQNIQNVSKP" FT CDS 306..1082 FT /gene="V1" FT /product="Coat protein (CP)" FT /db_xref="GOA:B8ZW59" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B8ZW59" FT /protein_id="CAR82101.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1079..1483) FT /gene="C3" FT /product="replication enhancer protein (REn)" FT /db_xref="GOA:B8ZW60" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B8ZW60" FT /protein_id="CAR82102.1" FT /translation="MDLRTGELITAHQAENGVFIWEINNPLYFKITDHSQRPFNMDHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDNVLYDVFDKTIDVTETHDIKYNFY" FT CDS complement(1224..1631) FT /gene="C2" FT /product="transcription activator protein (TrAP)" FT /db_xref="GOA:B8ZW61" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B8ZW61" FT /protein_id="CAR82103.1" FT /translation="MQPSSPSTSHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHI FT NCINYGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRPQPEAIQHGSRHHFNTDPVQSQ FT HQEGTGDSQMFSQLQNLDDLTASDWSFLKSI" FT CDS complement(1540..2619) FT /gene="C1" FT /product="replication associated protein (Rep)" FT /db_xref="GOA:B8ZW68" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B8ZW68" FT /protein_id="CAR82104.1" FT /translation="MAPPKRFKINAKNYFLTYPQCSLSLSEALSQLQTLETPVNKLYIK FT ICRELHENGEPHLHALVQFEGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTIDWGEFQIDGRSARGGQHSANDAYATAINAGSKSEALRVIRELAPKDYVLQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPEELEIWVSENVMSSAARPWRPDSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKIFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYGEYLDEEKNLSLKNWALKNATFITLYKPL FT FSSTNQGPTQDSQEETNQA" FT CDS complement(2160..2462) FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B8ZW69" FT /protein_id="CAR82105.1" FT /translation="MGNLICMPLFSSKESTSAQITDSSTWYPQVDQHISIQTFRELNHH FT LMSNPTSIRMETPSIGESFRSMEDLQGGDNILQTMLTQQLLTQEVSRKLLESLGN" XX SQ Sequence 2793 BP; 792 A; 536 C; 596 G; 869 T; 0 other; accggatggc cgcgcccttc ctttatgtgg tccccacgtg tgtcctatag acgtcactat 60 caaccaatca aattgcatcc tcaaacgtta aataatcgtt catttgtctt tatatacttg 120 gtctccaagt ttattgtcat ataatatgtg ggatccactc ctaaatgaat ttcctgaatc 180 tgttcacgga tttcgttgta tgttagctat taaatatttg caggccgttg aagaaacgta 240 tgagcccaat actttgggcc acgatttaat tagggatctt atatctgttg taagggcccg 300 tgactatgtc gaagcgaccc ggcgatataa tcatttccac gcccgtctcg aaggttcgcc 360 gaaggctgaa cttcgacagc ccatacagca gccgtgctgc tgcccccatt gtccaaggca 420 taaacaagcg acggtcatgg acgtacaggc ccatgtaccg aaagcccaga atatacagaa 480 tgtatcgaag ccctgatgtt ccccgtggat gtgaaggccc atgtaaggtc caatcgtatg 540 agcaacggga tgacattaag catactggta ttgttcgttg tgttagcgat gttactcgtg 600 gttccggtat tacccacaga gtgggtaaga ggttctgcgt taagtccata tactttttag 660 gtaaagtctg gatggatgaa aatatcaaaa agcagaacca tactaatcaa gtcatgttct 720 tcttggtccg tgatagaagg ccctatggaa acagcccaat ggattttgga caggttttta 780 atatgttcga taatgagccc agtaccgcaa cagtgaagaa tgatctcagg gataggtttc 840 aagtgatgag gaaatttcat gctaccgtga ttggtggtcc gtctggtatg aaggaacagg 900 ctttagttaa gagattcttt agaattaaca gtcatgtaac ttataatcat caggaggcag 960 ctaagtacga gaatcatact gaaaacgcct tgttattgta tatggcatgt acgcatgcct 1020 ctaacccagt gtatgcaact atgaaaatac gcatatattt ctatgattca atatcaaatt 1080 aataaaaatt atattttata tcatgggttt ctgttacatc tattgtctta tcaaatacat 1140 cgtataatac attatcaact gctctaatta cattattaat ggaaattaca cctagactat 1200 ctaaatactt aagaacttga tatctaaata ctcttaagaa acgaccagtc tgaggccgta 1260 aggtcgtcca gattctgaag ttgagaaaac atttgtgaat ccccagtacc ttcctgatgt 1320 tgtgattgaa ccggatctgt attgaaatga tgtcgtgatc catgttgaat ggcctctggc 1380 tgtggtctgt tatcttgaaa taaaggggat tgtttatctc ccagataaaa acgccattct 1440 ctgcttgatg agcagtgatg agttcccctg tgcgtaaatc catagttgat gcagttgatg 1500 tggagatagt atgagcagcc acagtctagg tctacacgct tacgcctgat tggtttcttc 1560 ttggctatct tgtgttggac cttgattggt acttgagaac aatggcttgt agagggtgat 1620 gaaggttgca ttcttgagag cccaattttt caaggataag tttttttctt catctagata 1680 ttctccatat gaagaagtag gtcctggatt gcagaggaag atagtgggaa ttccaccttt 1740 aatttgaatg ggtttcccgt attttgtgtt gctctgccag tccctttggg cccccatgaa 1800 ttctttaaag tgctttaaat aatgcgggtc tacgtcatca atgacgttgt accacgcatc 1860 atttgaaaat attttagggc taagatcgag atgtccacac aaataattgt gtggacctaa 1920 cgatcgtgcc cacattgttt ttccggtacg actatctccc tcgattacaa tactatcagg 1980 tctccatggc cgcgcagcgg aagacatgac gttctcggac acccatattt caagttcctc 2040 tggaacttga ttaaaagaag aagataaaaa aggagaaata taaggagctg gaggctcttg 2100 aaaaattcta tctaaattac tatttaaatt atgaaattgt aaaacgtaat ctttgggggc 2160 tagttcccta atgactctaa gagcttccga cttacttcct gcgttaatag ctgttgcgta 2220 agcatcgttt gcagaatgtt gtccccccct tgcagatctt ccatcgatct gaaactctcc 2280 ccaatcgatg gtgtctccat ccttatcgat gtaggatttg acatcagatg atgatttagc 2340 tccctgaatg tttggatgga aatgtgttga tctacttggg gataccaggt cgaagaatct 2400 gttatttgtg cactggtact ttccttcgaa ctgaacaagg gcatgcagat gaggttcccc 2460 attttcgtga agctctctgc aaattttaat gtataattta tttacaggag tttcgagggt 2520 ttgtagttgg gaaagtgctt cagataagga aagagaacat tggggataag taaggaaata 2580 atttttggca tttattttaa aacgctttgg aggagccatt tggtcaatgt accccgattg 2640 acttggattt catttatccc ttcaatcggt gtaatggggt acaatatata cttgtactcc 2700 aaatggcaat ttggtaatta tgcaaaagta aattgcaatt caaaattcaa aaatgaaaaa 2760 tcaaatcatt aaagcggcca tccgtataat att 2793 //