ID FM208847; SV 1; circular; genomic DNA; STD; VRL; 2741 BP. XX AC FM208847; XX DT 31-AUG-2009 (Rel. 102, Created) DT 29-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Rhynchosia yellow mosaic virus, segment DNA-A, complete sequence, clone DE MI32 XX KW complete viral segment. XX OS Rhynchosia yellow mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2741 RA Ilyas M.; RT ; RL Submitted (31-AUG-2008) to the INSDC. RL Ilyas M., Plant Biotechnology, NIBGE, P.O Box. 577, Jhang Road Faisalabad, RL 38000, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2009.07.018. RX PUBMED; 19664665. RA Ilyas M., Qazi J., Mansoor S., Briddon R.W.; RT "Molecular characterisation and infectivity of a "Legumovirus" (genus RT Begomovirus: family Geminiviridae) infecting the leguminous weed Rhynchosia RT minima in Pakistan"; RL Virus Res. 145(2):279-284(2009). XX DR MD5; 58182c2f34d1df851a55687b311b23ad. XX FH Key Location/Qualifiers FH FT source 1..2741 FT /organism="Rhynchosia yellow mosaic virus" FT /segment="A" FT /host="Rhynchosia minima" FT /mol_type="genomic DNA" FT /country="Pakistan:Lahore" FT /isolation_source="leaf of Rhynchosia minima" FT /clone="MI32" FT /db_xref="taxon:529680" FT CDS 185..514 FT /gene="av2" FT /product="pre-coat" FT /db_xref="GOA:C7TPF4" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:C7TPF4" FT /protein_id="CAR64497.1" FT /translation="MVFDVCLQLSICTLSKRVTPPHSLGYLLLQELVRIVRCRDHAKAE FT LRYGILKSDVISAEKTDLRQPFGPTCSCFTCPHHGQKKVMGQSPHESEAPLLSIVPHSG FT RPARL" FT CDS 306..1079 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:C7TPF5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C7TPF5" FT /protein_id="CAR64498.1" FT /translation="MRKRSYDTAFSSPMSSARRRLTFDSPLALPAPALRAPTTVKRRSW FT ANRPMNRKPRYYRLYRTPDVPRGCEGPCKVQSFEQRHDISHVGKVICISDVTRGNGITH FT RVGKRFCIKSVYITGKIWMDENIKTKNHTNSVMFKLVRDRRPFGTAMDFGQVFNMYDNE FT PSTATVKNDLRDRYQVLRKFHHTVTGGQYASKEQAIVNRFYRVNNHVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSISN" FT CDS complement(558..974) FT /gene="ac5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:C7TPF6" FT /protein_id="CAR64499.1" FT /translation="MVLILGCFLMVIHYVVVYTIKPINYSLFLARILTTGYSMMKLAQN FT LITITQIVLHRSGTRLIIIHVKNLSKIHRRSKRPPVSNELKHHTVGVILGLDVFIHPNF FT PCNVNRLDAKTFADTMSNTVTTCHIRNAYHLTNM" FT CDS complement(1076..1483) FT /gene="ac3" FT /product="replication enhancer protein" FT /db_xref="GOA:C7TPF7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C7TPF7" FT /protein_id="CAR64500.1" FT /translation="MDSRTGESITAAQQANGVYIWDVTNPLSFKIMQHQNALLGSNVKK FT TQIRIMFNHQLKKALGMHKCFLDLTIFHQWIHSCGRICLTFKNMLLRFLNKLGVISIQT FT VLAGCTNVLCDQLKVAYDDVHLSHEIKYNIY" FT CDS complement(1224..1637) FT /gene="ac2" FT /product="transcription activator protein" FT /db_xref="GOA:C7TPF8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C7TPF8" FT /protein_id="CAR64501.1" FT /translation="MRNSTPSKHHCSPPSIKAQHRFAKKKPRAIRRTRIDLRCGCSYYF FT HVNCRNYGFTHRGEHHCCSAGEWRLYLGRNKSPVFQDNATPERTPGQQREENPDPHNVQ FT PSAEESVGDAQVFPGLDDIPSMDSQLWADLLNF" FT CDS complement(1531..2625) FT /gene="ac1" FT /product="replication associated protein" FT /db_xref="GOA:C7TPF9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C7TPF9" FT /protein_id="CAR64502.1" FT /translation="MPTPGRFCINAKNYFLTYPRCPLSKEETLSQLLALQTPTNKKFIR FT VSRELHEDGTPHLHVLLQFEGKFQTRNQRFFDLVSQTRSAHYHPNVQAAKSASDVKQYV FT EKDGDYIDHGDFQVDGRSARGGKQSANDAYAEAINAESKSEALTILKEKAPKDYVLQFH FT NLNCNLDRIFVPPVPIYSSPFNLATFNNVPEGLRAWAEQNVKDSAARPHRPISVVIEGD FT SRTGKTMWARALGRHNYLCGHLDLSAKMYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTHIKGGIPTIFLCNPGPRSSYKEYLDEANNASLKSWALKNAEFYTLEAPL FT FTSVNQSATQVRQEETQSNSQNPN" FT CDS complement(2175..2468) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C7TPG0" FT /protein_id="CAR64503.1" FT /translation="MEHLISMFCCNSKGSSKPETKGSSTWYPKPGQHITIQTFRRLRAP FT QMLNNTWRKTETTLTMEISKSMDAQLEEVSSLPTTLMPKQSMQSPNQRRSLY" XX SQ Sequence 2741 BP; 679 A; 586 C; 660 G; 816 T; 0 other; acctgaggac cccgcgaccg gaggataggg ttttgccttt ggggaccacg ctgctttttg 60 tcgttcaatg agagacgctc ctcagcgctt agataattca aatttgaatt ataaacttgc 120 gcactacgtt ttgcgcattt aaccatgtgg gatccgctgt tgaacgactt tccgctctca 180 gtgcatggtt ttcgatgtat gcttgcaatt aagtatttgc acgctgtcca agagggttac 240 ccccccgcat tctttgggtt atttgctttt gcaggagtta gtgcggatag tgcgctgtag 300 ggaccatgcg aaagcggagc tacgatacgg cattctcaag tccgatgtca tcagcgcgga 360 gaagactgac cttcgacagc cctttggccc tacctgctcc tgctttacgt gcccccacca 420 cggtcaaaag aaggtcatgg gccaatcgcc ccatgaatcg gaagccccgc tattatcgat 480 tgtaccgcac tccggacgtc ccgcgcggct gtgagggccc atgtaaggtt cagtcatttg 540 aacagcgtca cgacatatca catgttggta aggtgatatg catttcggat gtgacacgtg 600 gtaacggtat tactcatcgt gtcggcaaac gtttttgcat caagtctgtt tacattacag 660 ggaaaatttg gatggatgaa aacatcaaga ccaagaatca caccaacagt gtgatgttta 720 agctcgttag agacaggagg ccgtttggaa cggcgatgga ttttggacaa gtttttaaca 780 tgtatgataa tgagcctagt accgctacgg tgaagaacga tttgcgtgat cgttatcaag 840 ttttgcgcaa gtttcatcat actgtaaccg gtggtcagta tgcgagcaag gaacaagcta 900 tagttaatag gttttatcgt gtaaacaacc acgtagtgta taaccatcag gaagcagcca 960 agtatgagaa ccatactgaa aacgctttgt tattgtatat ggcatgtact catgcttcaa 1020 acccagtgta tgcaacatta aagattcgga tctattttta cgattcgata tcaaattaat 1080 aaatattgta ttttatttca tgggaaaggt gtacatcatc ataagcgacc tttaattggt 1140 cgcataatac atttgtgcat cctgctaata cagtttggat gcttataact cctaatttat 1200 ttaaaaatct aagcaacata tttttaaaag ttaagcagat ccgcccacag ctgtgaatcc 1260 attgatggaa tatcgtcaag tccaggaaac acttgtgcat ccccaacgct ttcttcagct 1320 gatggttgaa cattatgcgg atctgggttt tcttcacgtt gctgcccagg agtgcgttct 1380 ggtgttgcat tatcttgaaa gacaggggat ttgttacgtc ccagatatag acgccattcg 1440 cctgctgagc agcagtgatg ctctcccctg tgcgtgaatc catagttgcg acagttgacg 1500 tggaagtagt aagagcaccc acagcgtaaa tcaattcggg ttctgcgaat tgctctgggt 1560 ttcttcttgg cgaacctgtg ttgcgctttg attgacggag gtgaacagtg gtgcttcgag 1620 ggtgtagaat tccgcattct ttaaagccca cgatttgagc gatgcgttgt ttgcctcgtc 1680 tagatactct ttataggagg atctgggccc cggattgcat aggaatatgg tggggatacc 1740 tcctttaatg tgagtgggct ttccgtattt cacgttgctt tgccagtctc tctgagcgcc 1800 catgaactct ttaaaatgct ttagatagtg cggatcaacg tcatcgatta cgttgtacca 1860 tgcgtcgttt gaatacattt tggcgctcaa atctaaatga ccacacaagt aattgtgtcg 1920 acctaaggct cttgcccaca tggttttacc cgtacgacta tcgccctcga taacgacact 1980 aataggtcta tgtggccgcg cagcggaatc cttcacgttc tgttcagccc aggcacggag 2040 accttctgga acattgttga atgtagctag gttgaacggc gaactgtaaa tagggaccgg 2100 agggacaaaa atcctatcta aattacaatt taaattatga aattgtaaga cgtaatcctt 2160 tggggctttc tccttcagta tagtgagcgc ctctgatttg gactctgcat tgattgcttc 2220 ggcataagcg tcgttggcag actgcttacc tcctctagct gagcgtccat cgacttggaa 2280 atctccatgg tcaatgtagt ctccgtcttt ctccacgtat tgtttaacat ctgaggcgct 2340 cttagccgcc tgaacgtttg gatggtaatg tgctgacctg gtttgggata ccaggtcgaa 2400 gaacctttgg tttctggttt ggaacttccc ttcgaattgc agcagaacat ggagatgagg 2460 tgttccatct tcgtgtagtt cacgagagac cctgatgaac ttcttgttag taggcgtttg 2520 taacgcaagg agctgcgaaa gtgtttcttc tttggataga ggacagcgag gataggttaa 2580 gaagtagttc ttagcgttta tgcaaaaacg acctggagtt ggcattttga aggtcgtttt 2640 gctatcgggt gataccccaa ttgctctata agtccttcta tcggtgtatt ggagtcctat 2700 atatatgatt agaattctca aggggtcctc agtataatat t 2741 //