ID FM202328; SV 1; circular; genomic DNA; STD; VRL; 2751 BP. XX AC FM202328; XX DT 11-MAY-2009 (Rel. 100, Created) DT 11-MAY-2009 (Rel. 100, Last updated, Version 1) XX DE Cotton leaf curl Rajasthan virus DNA segment A, complete sequence XX KW complete genome. XX OS Cotton leaf curl Rajasthan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2751 RA Mubeen M.; RT ; RL Submitted (08-JUL-2008) to the INSDC. RL Mubeen M., Plant Biotechnology, NIBGE, P O Box 577, Jhang Road Faisalabad, RL Punjab, 38000, PAKISTAN. XX RN [2] RX DOI; 10.1016/j.virusres.2009.01.020. RX PUBMED; 19428755. RA Mubin M., Briddon R.W., Mansoor S.; RT "Diverse and recombinant DNA betasatellites are associated with a RT begomovirus disease complex of Digera arvensis, a weed host"; RL Virus Res. 142(1-2):208-212(2009). XX DR MD5; c596faa95dfd34e9fa3d87ef8f31245f. XX CC related entry; FM202329 XX FH Key Location/Qualifiers FH FT source 1..2751 FT /organism="Cotton leaf curl Rajasthan virus" FT /segment="A" FT /host="Digera arvensis" FT /mol_type="genomic DNA" FT /isolation_source="host leaf" FT /collected_by="Muhammad Mubeen" FT /clone="Tan2" FT /db_xref="taxon:223259" FT CDS 131..487 FT /transl_table=1 FT /gene="precoat protein" FT /product="av2" FT /db_xref="GOA:C4PLB3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C4PLB3" FT /protein_id="CAR47804.1" FT /translation="MWDALLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICIVRSRNYVEASCRYRHFYARVDSTPASQLRQPIRVPCCCPHCPRHKTTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT CDS 291..971 FT /transl_table=1 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:C4PLB4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C4PLB4" FT /protein_id="CAR47805.1" FT /translation="MSKRAADIVISTPASTVRRRLNFGSPYACRVAAPIVRVTKQQAWT FT NRPMSRKPRMYRMYRSPDVPRGCEGPCTVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVQNVHRDRYQVLRNGMQLSPVDYTLQRNRLWSRSLSELTIMLFTINRKQENTRII FT RKMR" FT CDS complement(1026..1466) FT /transl_table=1 FT /gene="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:C4PLB5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C4PLB5" FT /protein_id="CAR47806.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQCNYNTRKALGLHKCFLTFRVWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLHNINSLQSHKNIS" FT CDS complement(1508..2596) FT /transl_table=1 FT /gene="rep" FT /product="replication associated protein" FT /db_xref="GOA:C4PLB6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C4PLB6" FT /protein_id="CAR47807.1" FT /translation="MPPKRNGIYSKNYVITYPKCSLTKEEALSQLLNIQTPTPKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFCDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPVSSSSFDQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMY FT SGTNQSTAQGSEEAQQEEESRS" FT CDS complement(2140..2442) FT /transl_table=1 FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C4PLB7" FT /protein_id="CAR47808.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSATWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEDNRQPMTLTPQHLTREVNRRLLESLRN" XX SQ Sequence 2751 BP; 717 A; 564 C; 633 G; 837 T; 0 other; accggatggc cgcgcgattt ttttgtggcc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaaa aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcatac atgtgggacg cactattaaa cgaattccct gatacggttc acgggtttcg 180 gtgtatgcta tctgtgaaat atttgcaact tttgtcgcag gattattcac cggatacgct 240 tgggtacgag ttaatacggg atttaatttg tattgtacgc tcccgtaatt atgtcgaagc 300 gagctgccga tatcgtcatt tctacgcccg cgtcgacagt acgccggcgt ctcaacttcg 360 gcagcccata cgcgtgccgt gttgctgccc ccattgtccg cgtcacaaaa caacaggcat 420 ggacaaacag gcctatgagc aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtacgg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgcagaat gttcatcgtg acaggtatca agttctgcgc aatggtatgc 840 aactgtcacc ggtggactat acgcttcaaa ggaacaggct ttggtcaaga agtttgtcag 900 agttaacaat tatgttgttt acaatcaaca ggaagcagga aaatacgaga atcatacgga 960 aaatgcgtta atgctttata tggcttgtac tcacgctagc aaccctgttt atgctacgtt 1020 gaagattagg atatattttt atgactctgt aacgaattga tattatgaag tttgaatttt 1080 atttctgaat attgatctac atacatagtt tgttggatta cattgtacaa tacatgttct 1140 acagctttaa taactaaatt aattgaaatt acaccgagat tgttcagata tttgaggact 1200 tgggttttga atacccttaa gaaaagacca gtctgaggct gtaaggtcgt ccagactcgg 1260 aatgttagaa aacacttgtg cagtcccagc gctttccgag tgttgtagtt gcactggatc 1320 ctgatcgtga gtatgtccat attcgtcgtg aatggacggt tgacgtggct gatgatcttg 1380 aaataaaggg gatttggaac ctcccagata tatgcgccat tccctgcttg agctgcagtg 1440 atgggttccc ctgtgcgtga atccatggtt gtggcagttg attgacagat aataagatca 1500 cccgcattca agatctactc tcctcctcct gttgcgcctc ttcgcttccc tgtgctgtac 1560 tttgattggt acctgagtac atgggtctat caagtgtgat gaagatcgca ttctttaaag 1620 cccaattttt tagtgcagaa ttcttctctt catccaaaaa ctctttatag cttgaattgg 1680 gtcctggatt gcagaggaag atagtgggaa ttccgccttt gatttgaact ggcttcccgt 1740 attttgtatt tgattgccag tccttttggg cccccatgaa ctccttaaag tgctttaggt 1800 aatgcgggtc gacgtcatca atgacgttaa accaggcgtc attactgtat acccttgggc 1860 tcagatctag atgtccacac agataattat gtggacctaa tgatctggcc cacatcgtct 1920 tccccgtcct actgtcaccc tcaatcacta cacttattgg tctattggcc cgcgcagcgg 1980 cactgacgac gttctcggca gcccacactt caagttcttc tggaacttga tcgaaagaag 2040 aagaggatac aggagaaaca taaggagctg gtggctcctg aaagattctg tctagatttg 2100 catttaaatt atgaaattgc agtacaaaat ccttaggagc tagttcctta atgactctaa 2160 gagcctccga tttacttccc gcgttaagtg ctgcggcgta agcgtcattg gctgtctgtt 2220 gtcctcctct tgctgacctt ccgtcgatct gaaattgccc ccagtcgaga atgtccccgt 2280 ccttctcgat gtaggatttg acgtcggagc tggatttagc tccctgtatg ttcggatgga 2340 aatgtgctga cctgcttggg gagaccaagt cgcagaatcg catattctgg cacttgaatt 2400 tcccttcgaa ctggatgaga acatgcaagt gaggagtccc atcttcgtga agctctctgc 2460 agattctaat atattttttt ggagttgggg tttgtatatt taataattgg gaaagtgctt 2520 cctctttggt gagagaacat ttgggataag tgatgacata gtttttggaa taaataccgt 2580 tccgctttgg aggcatgttg actaaaattg atcactgatt gaccgctctt gcaactctcc 2640 ccggtatatc ggtgatcaat atatagtgat caccagatgg cataatggta ataaaaaaac 2700 tttaatttga aattcaaacc aaaaggctaa agcggccatc cgtttaatat t 2751 //