Dbfetch
ID FM200426; SV 2; linear; genomic RNA; STD; VRL; 6704 BP. XX AC FM200426; XX DT 21-JUL-2010 (Rel. 105, Created) DT 26-SEP-2011 (Rel. 110, Last updated, Version 3) XX DE Fig fleck-associated virus gene, complete genome, genomic RNA XX KW complete genome. XX OS Fig fleck-associated virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Maculavirus; OC unclassified Maculavirus. XX RN [1] RC revised by [3] RA Elbeaino T.; RT ; RL Submitted (21-JUL-2008) to the INSDC. RL Elbeaino T., IPM- Virology, Istituto Agronomico Mediterraneo di Bari, Via RL Ceglie 9, 70010 Valenzano- Bari- Italy, ITALY. XX RN [2] RX PUBMED; 21840352. RA Elbeaino T., Digiaro M., Martelli G.P.; RT "Complete sequence of Fig fleck-associated virus, a novel member of the RT family Tymoviridae"; RL Virus Res. 161(2):198-202(2011). XX RN [3] RP 1-6704 RA Elbeaino T.; RT ; RL Submitted (15-MAR-2011) to the INSDC. RL Elbeaino T., IPM- Virology, Istituto Agronomico Mediterraneo di Bari, Via RL Ceglie 9, 70010 Valenzano- Bari- Italy, ITALY. XX DR MD5; e098b615944ffb6837438528de00834d. XX FH Key Location/Qualifiers FH FT source 1..6704 FT /organism="Fig fleck-associated virus" FT /host="Ficus carica cultivar Canestrelle" FT /mol_type="genomic RNA" FT /country="Italy:Apulia" FT /db_xref="taxon:548908" FT 5'UTR 1..59 FT CDS 60..1445 FT /product="p50" FT /db_xref="InterPro:IPR004935" FT /db_xref="UniProtKB/TrEMBL:F2Q7T8" FT /protein_id="CCA41205.1" FT /translation="MDHGFLLNLRTTVVHISQRCVHLTLDGKHLSTSPKIPRLVQICPI FT QGAHQHASSLRHKRFRFRLHSSSSPRSQNDRNSPSLRSLVFPRHFSIHCNVYEGKQVQQ FT ALKAPTELPNPLELPPPPQRFRPIRPRPSPPSLSRNPPRLHARRPDVLLSSPDPRPLLP FT LPEGVSPLRFPNHSSRGRLHRSVTQPVPVPVSILGPGPSVLPGVQPLSPVHSTPIFPRV FT VEDHRDPQLHSSRPVIIRHGAGILGPHPLSSNLPTHKRISNPGLRRQTAVQDSGLRSTP FT STPLIERALSGPPGSGSGLPQPVFVCPSCSNASCHRSLWVHPHAKLEARICMGHLQCLG FT SSGTIHAPHLSDPAKFALCLSRNPSVATSPPAKDPLPLFTELSDPGRALFVPLPWAFGS FT SALFVHHHPDFPLPKSPACLDNPTPEQCQAARLDPAGRLVSKPVALFCSTKTLTAIPSS FT SNL" FT CDS 67..6552 FT /codon_start=1 FT /transl_table=1 FT /product="replication-associated polyprotein" FT /db_xref="GOA:E1U8F3" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E1U8F3" FT /protein_id="CAQ86912.3" FT /translation="MAFSSILEQLSFTSHKDASTSPLMESISLPLRKSLDLYKFALSKE FT HTSMLQAYGINVSGLGSTPHPHPAHKTIETHLLFDHWSFLATSPSTVMFMKESKFNKLS FT KLQPNFQTLLNFHLHPKDFARYGPDPLPLAFPETPLVFMHDALMYYSRAQILDLFFRSP FT KVSHLYASLIIPPEADFTDLSLNPSLYQFQFLGQDLLYSLESNPSAQYTQPQSSLEWLK FT TTVIHSSTHPGLSLSVTVLESWGPIHSLLISRLTKESPIPASEDRLLFKTPDCVLLPPP FT LSLNVPSRDLLVPAQVYHNLFLYVRAVRTLRVTDPSGFIRTQNSKPEYAWVTSNAWDHL FT AQFMLLTCPIRPNSHFAYLVTPLLRLRHQLKTLSRSSLNSLILAVPSSFLCLGLLARRL FT FSSTITQIFLFRNPLLASTTPPLNNARQPVLTRLADWFLNQLPSFVQRKLSPPSPRLPI FT FKVVLTPKPVQYTYPPDVPPLFLKFAPPRILHLFRQEVNHVPRWLFPITLSASALSALY FT LLFVRLSSPSSPQELSDSYRRYFHPKPWKLFLERKEHFTPEAPFFPQKIENAPLLLPDQ FT EKSVPSSDSTKFSTEPRQTCPLSSQTEPLTPLVYPRSSCATAPITIAPNHQAQATTPYP FT SSQLCTGARRPSPTTKPEITSPHPPPGQTNTSDASTSSVLPPVPPPLSPHLSNPRSSSS FT PPAENSRLILDPTAIGPVTTFSSTLSRSWLPGCADFPFRRRNPGSPHLPYPPPLASSSP FT HPCCLLVAFSNATGVFKETLWTLLCETFPDSLLDTTLGLSTEHLTALCGYYFAAATVHS FT EHASCVYGVTDPVIKLTIRHTTGFPGHFELILLGGTPNAFSMVSPLSQSILNFTYSKKP FT LPIKQVHNYVALPHRAKNLSSNLKNSFDGIMASANPLSPSTAAAAFVSLDNRLDFQPPR FT CVQLVHLAGFAGCGKSLPIQNLLRHNQDFRNFRVSVPTTELRNEWKKDLQLKSTESWRI FT NTWESSLLKTSPILVIDEIYKMPRGYLDLTILADPTIQFVIILGDPLQGEYHSLNPSSS FT NHHLSSEITHLLPYIDYYCMWSYRVPRKLANFFNISSSNKNPGFCSFSLHLPTDPSSPI FT LTCSQSQAKILNDTGHRALTISSSQGLTLDKPAHIYLDRNIPLLSPSNVIVALTRSRVG FT LCFTGDSDMFNCIRRSTPILEALFSGRQIDLAHHFPSILSRVNIITSPLPARRTLFGGA FT PSHSSLSSGPRPRLVPALVPGLNRFTSLPSAPRPGPAVANPPSLPLSQMQSVDPDSQHD FT VVLVYPQPIECEPQRAADATILPETRRPLHHELPFVELSSPNPSPALFSETAFSHSYPG FT VDWQLIAGHFLSPFTPEEKEIMYRGTLSSQFPHLNIESRLGPQPLTLSAANHNSKRDST FT LLPASIKKRLRFRPSARPYSISPSDQLLGHLLFLSLCKAYHRSPDPIEFNFPLFVDCIE FT LNDYSQLTSKTQKTIQANAYRSDPDWRWSAARIFAKTQHKVNEGSIFGPWKACQTLALL FT HDAVILIFGPIKKYQRHFDDKDRPPHLYVHAGKTPHQLSSWCQQFLTPGPRLANDYTAF FT DQSQGGEAAVLEVLKMRRVSIPEHLIQLHKTIKTSITTQFGPLTCMRLTGEPGTYDDNT FT DYNTAILYSQFQLGDTPVLVSGDDSLIDRVPLPHPHWPTISNLLLLRPKPEISNFSLFC FT GYFVGPEGAVRAPRALFAKLAIAFDLGELDKCLASFLAEFTVGHSLGDLVWNLIPPDLL FT IYQFALFDAFCRECSREQKLALRLGEIPDYSRLLRFDQFHQFTFASFSLLKSSARRLYL FT RLFRGKKLRNVNTFPAFHPEGAASFDSESFQPLHPDVAFDPTPHLIHQISRPPSIPTPS FT LSTPTNALLTPQKSSIHRAACTGFPITCQPRHHTSHRHHHSSPRTTAHSLPRPQSAPSP FT LWRTSRMTTVNSLFQQLLPLNASSSESRDSSVLPGSVPESRLVQPPQLPPPPSSSPKGN FT ATRLATDLPFQFNFYDVTGTETGSTTLDISSKDVVLKLLGPYRHGVLLSLEAITMPSAN FT AAKYPQTLDAVWSTADHVISASEILATYGGQRLTWGEASMNAALNLPADLSHLNPVIKD FT STTYKDTPRLNLRFYQNPDSVSLGINAPISGSVIIRGVLRLSSPTNTPTLA" FT mat_peptide 67..2010 FT /product="methyltransferase" FT mat_peptide 2011..2604 FT /product="papain-like protease" FT mat_peptide 2605..3738 FT /product="helicase" FT mat_peptide 3739..5883 FT /product="RNA-dependent RNA polymerase" FT mat_peptide 5884..6549 FT /product="coat protein" FT 3'UTR 6553..6704 XX SQ Sequence 6704 BP; 1404 A; 2570 C; 1094 G; 1636 T; 0 other; gtctctcctc tctatctctc tctcttctta atctccttct tctcaacctc ttacacttta 60 tggatcatgg ctttctcctc aatcttagaa caactgtcgt tcacatctca caaagatgcg 120 tccacctcac ccttgatgga aagcatctct ctacctctcc gaaaatccct cgacttgtac 180 aaatttgccc tatccaagga gcacaccagc atgcttcaag cttacggcat aaacgtttca 240 ggtttaggct ccactcctca tcctcacccc gctcacaaaa cgatcgaaac tcaccttctc 300 ttcgatcatt ggtctttcct cgccacttct ccatccactg taatgtttat gaaggaaagc 360 aagttcaaca agctctcaaa gctccaaccg aacttccaaa ccctcttgaa cttccacctc 420 caccccaaag atttcgcccg atacggccca gaccctctcc ccctagcctt tcccgaaacc 480 cccctcgtct tcatgcacga cgccctgatg tattactctc gagcccagat cctcgacctc 540 ttcttccgct ccccgaaggt gtctcacctt tacgcttccc taatcattcc tccagaggca 600 gacttcaccg atctgtcact caacccgtcc ctgtaccagt ttcaattctt gggccaggac 660 cttctgtact ccctggagtc caacccctca gcccagtaca ctcaacccca atcttccctc 720 gagtggttga agaccaccgt gatccacagc tccactcatc caggcctgtc attatccgtc 780 acggtgctgg aatcctgggg ccccatccac tctcttctaa tctcccgact cacaaaagaa 840 tctccaatcc cggcctcaga agacagactg ctgttcaaga ctccggattg cgttctactc 900 cctccacccc tctcattgaa cgtgccctct cgggacctcc tggttccggc tcaggtttac 960 cacaacctgt ttttgtatgt ccgagctgtt cgaacgcttc gtgtcacaga tccctctggg 1020 ttcatccgca cgcaaaactc gaagccagaa tatgcatggg tcacctccaa tgcctgggat 1080 catctggcac aattcatgct cctcacttgt ccgatccggc caaattcgca ctttgcttat 1140 ctcgtaaccc ctctgttgcg acttcgccac cagctaaaga ccctctcccg ctcttcactg 1200 aactctctga tcctggccgt gccctcttcg ttcctctgcc ttgggctttt ggctcgtcgg 1260 ctcttttcgt ccaccatcac ccagattttc ctcttccgaa atcccctgct tgcctcgaca 1320 accccacccc tgaacaatgc caggcagccc gtcttgaccc ggctggcaga ttggtttcta 1380 aaccagttgc cctcttttgt tcaacgaaaa ctctcaccgc catcccctcg tcttccaatc 1440 tttaaggtag ttttgacacc taaacctgtt caatacactt accctcctga tgtcccacct 1500 ctcttcctca agttcgcccc accgagaatc ctccacctgt tccgtcaaga agtcaatcac 1560 gttcctcgtt ggttgtttcc catcactctc tcggcctcag ctctttctgc actgtacctg 1620 ctcttcgtcc gactctcctc accgtcttcc cctcaagagc tttccgacag ctaccgccgc 1680 tatttccacc caaaaccctg gaagctcttc cttgaacgaa aagagcactt cacccctgaa 1740 gcgcctttct ttcctcagaa gattgagaat gccccgcttc ttcttcccga ccaagagaag 1800 tcagtcccct cctccgattc aaccaaattc tccaccgagc cccgtcagac ctgccccctc 1860 tcctcccaaa ccgagcccct tacccccctt gtataccccc gatccagctg cgctacagcc 1920 cccatcacca tcgctcccaa tcatcaagct caagccacaa ctccctaccc ctcctcccag 1980 ctctgcacag gcgcccgccg accatccccg accacgaaac ccgagatcac ttctccccat 2040 ccccccccag gacaaaccaa tacctcagac gcttcaacct ccagcgttct cccccctgtc 2100 cccccccccc tgtcccccca tctctccaac ccccggagct catccagtcc tccggccgag 2160 aattctcgcc tcatcctcga ccccacagcc attggccccg tcaccacctt ttcatccact 2220 ctctcccgat cctggttgcc tggctgcgcc gactttcctt tccgccgccg caacccgggg 2280 tccccccacc tcccttatcc cccacccttg gcctcaagtt cgccccaccc ttgttgcctc 2340 ctcgtcgcgt tctccaacgc aaccggagtc ttcaaagaga ccctctggac cctcctctgt 2400 gagactttcc ccgactccct ccttgatacc accctcggcc tttctaccga gcacctcaca 2460 gctctctgcg gttactactt tgccgccgcc accgtccatt ccgaacacgc ctcctgtgtc 2520 tacggcgtta ccgacccagt catcaagctc acaatccggc acacgactgg cttcccaggc 2580 cactttgagt tgatcctcct tggcggcact ccaaatgcct tctcgatggt ctctcccctt 2640 tctcaatcca tcctcaactt cacttactcc aaaaagccgc tcccaatcaa acaagtgcac 2700 aactacgttg cgcttcccca tcgtgccaag aatctctcat ctaatctcaa gaactctttc 2760 gatggcatca tggcctccgc aaatcctctc tcaccctcaa ccgctgccgc cgcttttgtt 2820 tccctcgaca accgcctgga tttccaaccc ccgagatgcg ttcagctcgt ccatctcgct 2880 ggcttcgctg gttgtggcaa gagtcttccg attcagaatc tccttcgcca taatcaagat 2940 ttccgtaact ttcgagtttc tgttccaacc acagaacttc ggaacgaatg gaaaaaagat 3000 ctccaactca aatccacaga gtcctggcgc ataaacacct gggaaagttc ccttctgaag 3060 acctccccaa tcctggtcat agatgaaatc tacaaaatgc ccagaggata tcttgatcta 3120 accatactcg ccgatccgac aattcaattc gtcattattc ttggcgaccc ccttcagggc 3180 gagtatcatt ctctcaatcc ttcatcctcc aatcatcacc tcagctctga gatcactcat 3240 ttgctgccct atatagacta ttactgcatg tggtcttata gggtaccaag aaagctggct 3300 aatttcttca acatctcaag ctccaacaag aaccctggtt tttgctcttt ctcactccat 3360 cttccaacag accccagttc tccaatcctc acctgcagcc aatcccaagc caagattctg 3420 aacgacacag gtcaccgagc actcaccata tcttcctctc aaggcttgac cttggacaaa 3480 cccgcccaca tctatctcga ccgaaacatt cctttgctct caccttccaa tgtcatcgtc 3540 gcactcaccc gcagccgtgt cggactctgt ttcaccggtg actctgacat gttcaactgc 3600 atccggcgtt ccactcctat tctcgaagcc cttttctccg gccgacagat cgacttggcc 3660 catcacttcc cttccattct ttcccgcgtc aacatcatca cctcacccct accagctcgt 3720 cgcaccctct tcggtggtgc cccttcccat tcctcccttt caagcggacc ccgcccccgg 3780 ctggttcccg ctttggtgcc cggacttaac cgcttcacct cacttccatc cgccccaaga 3840 ccaggaccgg ctgttgccaa cccaccttct ctgcctttgt cgcaaatgca aagcgtggac 3900 cccgactccc aacacgatgt tgtcttggta taccctcagc ccattgagtg cgagccccaa 3960 cgcgctgctg acgcgacaat cctcccagag acccgccgac ccctccacca cgagctcccc 4020 ttcgtcgagc tcagcagccc aaacccttct ccagctctct tctcagaaac cgccttctcc 4080 cattcctatc ctggagtcga ctggcaactc atcgctggcc acttcctctc accgttcaca 4140 cccgaagaga aagagatcat gtatcgtgga accctctcct ctcaatttcc acatctcaat 4200 attgagtcca gactcggccc ccaaccactc accctctctg ccgccaatca caacagcaag 4260 cgagacagca ccctcctccc cgcctcaatc aagaaacgtc tccgattcag accatcagct 4320 cgaccttact ctatctctcc gtccgaccaa ctcctaggcc accttctttt cctctcactc 4380 tgcaaagcct accaccgttc cccagatcca atagagttca attttccact tttcgttgac 4440 tgcattgaac tcaacgacta ctcccagctg acctcgaaga ctcagaaaac aatacaagcc 4500 aatgcctatc gttccgatcc tgattggagg tggtcagcag caaggatctt cgcgaaaacc 4560 cagcacaaag tcaacgaggg ctccatcttc ggcccatgga aagcctgcca gaccctcgcc 4620 ctcctccacg acgccgtcat cctcatcttc ggtccaatca agaaatatca gcgtcacttc 4680 gatgacaaag accgcccccc ccatctctat gtccacgccg gaaagactcc gcaccaactc 4740 tcctcctggt gccagcagtt cctcactccc ggccccagac tcgccaatga ctacaccgca 4800 ttcgatcaat cccaaggagg tgaagccgcc gtcctcgaag tcctcaaaat gcgccgagtc 4860 tccatccccg aacacctcat ccagctccat aaaaccatca agacttccat caccacccag 4920 ttcggccctc tcacctgcat gcgactcaca ggggaaccag gcacctatga cgacaacacc 4980 gattacaaca ccgccatcct ctacagccag ttccagcttg gtgacacccc agttctcgtc 5040 agcggtgacg actccctcat tgaccgtgtc cctctcccac atccccactg gcccaccata 5100 tccaacctcc ttctcctcag accaaaacca gagatcagca atttcagtct cttctgcggc 5160 tactttgtcg gccccgaggg tgcggtccga gcccccagag ccttgttcgc caaactcgcc 5220 attgctttcg atctcggaga gctcgacaag tgtctcgcat ctttcctcgc tgaattcacc 5280 gtcggacatt ccctcggtga cttggtttgg aacctcatcc caccagatct tctcatctac 5340 caattcgccc tctttgacgc attctgcaga gagtgctctc gcgagcaaaa actcgctctc 5400 agacttggcg aaatccccga ttattcccgc ctcctcagat tcgaccaatt ccaccagttc 5460 accttcgcct ccttcagcct gctcaagtct tcagcccgcc gactctatct cagactcttt 5520 cgcgggaaga aactccggaa tgtcaacact ttccccgctt tccatccaga aggagccgct 5580 tccttcgatt ctgagagctt ccaacctctg catcccgacg tcgccttcga tccgacccct 5640 catctgatcc accaaatatc gaggcctcct tccatcccga cacccagtct ttcgactccg 5700 accaatgctc tcctcacccc ccagaagtct tcgatccata gggctgcttg cacaggattt 5760 ccaatcacat gtcagccccg ccatcatact tctcatcgtc accatcactc tagccctcgc 5820 actactgctc actctttacc tcgtcctcag agcgcacctt ctcctctgtg gcgcacctcc 5880 cgtatgacga ctgtcaactc cctcttccag caacttctcc ctctcaatgc ttcgagctcc 5940 gagtctcgcg attcgagtgt gctccctggc tctgttcctg agtctcgctt ggtccagcct 6000 ccgcaacttc ctccgccacc gtcctccagc cccaaaggga atgcaactcg cctagccacc 6060 gacctcccct tccagttcaa cttctatgac gtcaccggaa cagaaaccgg ctctaccact 6120 ctggacatct cttccaagga tgtcgtcctc aagctgctcg gcccataccg tcacggcgtc 6180 ttgctctccc tcgaagccat caccatgcca tctgccaatg ccgcaaagta ccctcaaact 6240 ctggacgcgg tttggtctac cgctgaccac gtcatctccg cctccgaaat cttagccacc 6300 tacggcggcc agcggctcac ctggggcgaa gcctccatga acgcagctct caacctccca 6360 gccgatcttt ctcatctcaa ccccgtcatc aaagactcaa ccacctacaa agacacccca 6420 agactcaacc tccgttttta ccaaaaccct gactccgtct cccttggcat caacgcacca 6480 atttccggct ccgtgattat tcgcggcgtc ctccgactct cttcaccaac caacactccc 6540 accctggctt aattgccaaa cgcgagaagg aaaactcgcc cagctttcag gctggttttg 6600 ttgttaaacc tccaacctcc ccaagcaatt cccggctatc cgcaaggcca ttccgtccta 6660 gttttaccaa attttctttg tttgcttgtt tcccatttct tcca 6704 //