ID FM164938; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC FM164938; XX DT 31-MAY-2009 (Rel. 101, Created) DT 31-MAY-2009 (Rel. 101, Last updated, Version 1) XX DE Tomato leaf curl Pakistan virus, DNA A, complete genome XX KW complete genome. XX OS Tomato leaf curl Pakistan virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2759 RA Ilyas M.; RT ; RL Submitted (31-MAY-2008) to the INSDC. RL Ilyas M., Plant Biotechnology, NIBGE, P.O Box. 577, Jhang Road Faisalabad, RL 38000, PAKISTAN. XX RN [2] RA Ilyas M., Gambley C., Mansoor S., Briddon R.W.; RT "Identification and characterization of Tomato leaf curl Pakistan virus."; RL Unpublished. XX DR MD5; d4d03c2025d14b8857c9d8ac0f3b7dd5. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Tomato leaf curl Pakistan virus" FT /host="Euphorbia pulcherrima" FT /mol_type="genomic DNA" FT /country="Pakistan:Faisalabad" FT /clone="MI38" FT /tissue_type="leaf" FT /db_xref="taxon:341711" FT CDS 97..501 FT /gene="av2" FT /product="pre-coat" FT /db_xref="GOA:C4PLA5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C4PLA5" FT /protein_id="CAQ58587.1" FT /translation="MVPPINLVRKLCFTFIMWDPLLNEFPETVHGFRCMLAVKYLQLVE FT NTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSQFRQPICEPCCCPH FT CPRHKGKGMGEQAHEQKAQDVQDVQKSRCS" FT CDS 305..1075 FT /gene="av1" FT /product="coat protein" FT /db_xref="GOA:C4PLA6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C4PLA6" FT /protein_id="CAQ58588.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHGIQHIGKVMCVSDVTRGIGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT CDS complement(1072..1476) FT /gene="ac3" FT /product="REn" FT /function="replication enhancer protein" FT /db_xref="GOA:C4PLA7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C4PLA7" FT /protein_id="CAQ58589.1" FT /translation="MDSRTGELITAAQAQNGVFIWEIQNPLYFKITEQHNRPFTMNQDI FT ITVQIQFNHNLRKALGIHKCFLAFRIWMTSQPPTGRFLRVFKTQVLKYLDNLGVISINN FT VVRAVDHVLWNVLEHIVNIEQSSSIKFNIY" FT CDS complement(1367..1621) FT /gene="ac2" FT /product="TrAP" FT /function="transcription activator protein" FT /db_xref="GOA:C4PLA8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C4PLA8" FT /protein_id="CAQ58590.1" FT /translation="MRHSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSTEWRVYLGDSKSPLFQDNRATQ" FT CDS complement(1524..2606) FT /gene="ac1" FT /product="Rep" FT /function="replication associated protein" FT /db_xref="GOA:C4PLA9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C4PLA9" FT /protein_id="CAQ58591.1" FT /translation="MPPKRFLINSKNYFLTYPKCSLTKEEALSQFQNLQTPVNKKYIKI FT CREFHENGEPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLE FT KDGDTLDWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDYVLQFHN FT LNTNLDRIFTPPVEVYVSPFSSSSFDQVPEELEVWAAENVVDAAARPLRPKSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNQAWYNVIDDVDPHYLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNSALKNWALKNATFITLEGPLY FT SGSNQSAAQASQEGDQASSC" FT CDS complement(2162..2458) FT /gene="ac4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C4PLB0" FT /protein_id="CAQ58592.1" FT /translation="MKMGNLIFTCSSSSRGNTSAKITDSSTWYPQPGQHISIRTFRELS FT QAPTSSPIWKRTETPSTGESFRSMEDLQEGDNSQPTTLTPQRLTQAVSQRLLE" XX SQ Sequence 2759 BP; 729 A; 559 C; 652 G; 819 T; 0 other; accggatggc cgcgcttttt ttatggcccc cacagagcac taactgacaa tgacatgtgg 60 accaatgaga atcgttcctc gtagcctaat tatttcatgg tcccccctat aaacttagtg 120 cgcaagttgt gtttcacatt cattatgtgg gatccgttgt tgaacgagtt tcccgaaacc 180 gtgcacggtt ttaggtgtat gctagcagtt aaatatttgc agttagtaga aaatacgtat 240 tctccagata ctttgggata cgatttaatt agggatttaa tttcagtaat aagggctagg 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgtcg 360 ccgtctcaat ttcgacagcc catatgcgag ccgtgctgct gcccccattg tccgcgtcac 420 aaaggcaagg gcatgggcga acaggcccat gaacagaaag cccaggatgt acaggatgta 480 cagaagtcca gatgttccta gaggatgtga aggcccatgt aaggtccagt catttgagtc 540 cagacatggt atccagcaca ttggtaaagt catgtgtgtt agtgatgtta ctcgtggtat 600 tgggcttacc cacagggtag gcaagagatt ttgtgttaag tccgtttatg ttttaggcaa 660 gatttggatg gatgagaaca ttaagaccaa gaatcatacg aatagtgtga tgttttttct 720 agttagggat cgaaggcccg ttgacaagcc tcaggatttt ggagaggttt ttaatatgtt 780 tgataatgag cccagcacgg cgactgtgaa gaatgttcat cgtgatagat accaggtatt 840 aaggaagtgg tacgcaactg tgacaggcgg tcaatatgca tcgaaggagc aagctctcgt 900 gaagaagttt attagggtta ataattatgt agtgtacaac cagcaagagg ctgggaagta 960 tgagaatcat actgagaatg cgttgatgtt gtatatggcg tgtacgcacg cctctaaccc 1020 tgtgtatgct acattgaaga tacggatcta cttctatgat tcagtatcga attaataaat 1080 attgaatttt attgaagatg attgttctat atttacaata tgctctaata cattccataa 1140 tacatgatca actgccctaa ctacattatt tatactgata actcctagat tatctaaata 1200 cttaagcact tgggtcttaa agacccttaa gaaacgacca gtcggaggct gtgaggtcat 1260 ccagattcgg aaggctagga aacatttgtg tatccccaaa gctttcctca ggttgtgatt 1320 gaactgtatc tggacggtga tgatgtcttg gttcatggtg aatggcctat tgtgttgctc 1380 tgttatcttg aaatagaggg gattttgaat ctcccagata aacacgccat tctgtgcttg 1440 agctgcagtg atgagttccc ctgtgcgtga atccatggtc gtggcaggct aatgctatga 1500 agtatgaaca cccacacggg agatcaacac gacgacgcct ggtccccttc ttggctagcc 1560 tgtgctgcac tttgattgga acctgagtag agtgggcctt cgagggtgat gaatgtcgca 1620 ttctttaatg cccaattttt aagtgcagaa ttcttctcct cattcaaaaa ctctttatag 1680 cttgagttgg gtcctggatt gcagaggaag atagtgggaa ttccgccttt aatttgaact 1740 ggctttccgt acttggtgtt gctttgccag tccctttggg cccccatgaa ttctttaaag 1800 tgctttaggt agtgggggtc gacgtcatca atgacgttgt accaggcctg gttgctgtag 1860 acctttggac taaggtctaa atgaccacac agataattat gtggtccaag tgatctggcc 1920 cacatcgtct tccccgttct actatcaccc tctatgacaa tacttttagg tctcaatggc 1980 cgcgcagcgg catccaccac attctcagca gcccagactt caagttcttc cggaacttga 2040 tcaaaagaag aagaagaaaa aggagagaca taaacctcca caggaggtgt aaaaatccta 2100 tctaaattag tatttaaatt atgaaattga agtacataat cttttggtgc taattcttta 2160 attactctaa gagcctctga cttactgcct gcgttaagcg ctgcggcgta agcgtcgttg 2220 gctgactgtt gtccccctct tgcagatctt ccatcgatct gaaactctcc ccagtcgagg 2280 gtgtctccgt ccttttccag ataggacttg acgtcggagc ttgacttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctggttggg gataccaggt cgaagaatct gttattttgg 2400 cacttgtatt tcccctcgaa ctggatgagc acgtgaagat gaggttcccc attttcatga 2460 aactctctgc agattttaat gtattttttg tttactgggg tttgtaggtt ttggaattgg 2520 gaaagtgctt cctctttggt gagagagcac ttgggataag tgaggaaata atttttcgaa 2580 ttaataagga aacgctttgg aggcatgttg accaagtgag aggacccgat tgaccgctct 2640 tgcaactctc ccctgtatat cgggtctcaa tatatagtga gacccaaatg gcattattgt 2700 aatttggata acagattcaa aattctaacg ctccaaaaag cggccatccg tataatatt 2759 //