Dbfetch
ID FM163371; SV 1; circular; genomic RNA; STD; VRL; 4790 BP. XX AC FM163371; XX DT 27-MAY-2008 (Rel. 95, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus genomic RNA, complete segment M, isolate GA-1L XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4790 RA Lopez C.; RT ; RL Submitted (23-MAY-2008) to the INSDC. RL Lopez C., COMAV, Universidad Politecnica de Valencia, Camino de Vera 14, RL 46022 Valencia, SPAIN. XX RN [2] RA Lopez C., Aramburu J., Galipienso L., Soler S., Nuez F., Rubio L.; RT "Evolutionary analysis of tomato Sw-5 resistance breaking isolates of RT Tomato spotted wilt virus"; RL J. Gen. Virol. 92(1):210-215(2010). XX DR MD5; da3d0b6685d4f028ababa82fb40c1cb0. XX FH Key Location/Qualifiers FH FT source 1..4790 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /isolate="GA-1L" FT /mol_type="genomic RNA" FT /country="Spain" FT /isolation_source="Solanum lycopersicum" FT /collection_date="2004" FT /db_xref="taxon:3052585" FT CDS 101..1009 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:B3GVV0" FT /protein_id="CAQ57658.1" FT /translation="MLTFFSNKGSSKSAKKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPNWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1299..4706) FT /gene="G1-G2" FT /product="glycoprotein precursor" FT /db_xref="GOA:B3GVV3" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:B3GVV3" FT /protein_id="CAQ57659.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVETIRGGHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGVSTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG FT PNDCIENQNCIAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSAGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPVQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSKITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDRAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKRPSITSTRL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNKSYKSRSKIVDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4790 BP; 1557 A; 842 C; 844 G; 1547 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagcaa 120 taaggggtct tctaagtctg ccaaaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gtagaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaatgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaaat tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccctagttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaagggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaaaggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaaca gtgagaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt aaaatcaaaa aacaaaacaa 1080 aaaacaaaaa acaaaaagag agagaaaaaa caaaaaacaa aaaaatcaaa aacagaaaac 1140 aaaaacaaaa taaggctgaa aagccaaact ttggtccgaa gactcttttt gttgtttttt 1200 gtttatttgt attttttgtt tgttttttgt ttattttata tatacataat ctgactaatg 1260 tagaaaattg aatcaaattt agcctgtgac aagcagcctc agacaaggtg agagaaatcc 1320 ataggtggcc ttcgtcttgt cattgtatct ttcattaaca taggggcttt gatctcagaa 1380 tcatcatcat ccactatctt ggatctagat ttataagatt tattcttgac atatccttta 1440 caaatggttg ttagaataga acagaaataa attacaagga aaatgaatgc aataagcaat 1500 atcactctga tagtatcaaa aaacgagcca aaataacttg caatgaaatt gaatgggctc 1560 ttaatataat cccagaaacc ccatgctgaa gaatcagaat tatattgttg ttcttcatga 1620 gcatactcat cattttgatc tattatgttc tctggttctt ctacgacaac attattgacc 1680 agaacctcca cagaaatatc tggattgcct tctggataca acgtcatttt cttcttgtcc 1740 ggattagcag aacaaaacat tgttatgttg tatttatttg accctttttt aacagccagt 1800 tgataagtag atagagagca agcatctata gaaattgaag tagaaaatgt caaatccgag 1860 aaaaattcta agatgcaaga taaaccttga ccgcatagaa gacagccgtt gcaatttaat 1920 cttgttgaag ttatggaagg tctcttagga gcaactttaa agagatcaga tggaagatca 1980 acgacaatct tgagtttgcc taaactgaaa gctttttcca agaaaaaact agagaaatct 2040 ttgaaactaa caggaatatc tgatatttgc tctaaaccag atctaaatct gtatgtatca 2100 tatccgcatg ttttaatagt gattgatttt ttccctattg ctgcacgatc ccaagacatg 2160 tcatctcctt ctagagtttt cttagtaaaa ataggcactc catcatgagt caattgtggg 2220 tgaccaaaca ttttgacagg atcattcaag tttgcaatat ttccagaata aatatggcca 2280 tcaggtccat gagctatcag ttcacctata gtgataccat cattgtgcag atctgcttgt 2340 atatcagctt gaaacaaggc attttcataa ggaacctctt cagtgatctt tgagcactga 2400 cctcctaaaa taccagaaat acaaacatct gccactatag ttgattttag cactgaataa 2460 attctgtatg atttatccat gtcatagata ttccgacaga atccacatgt agcaccttca 2520 ttaattgcaa aacaccaagc ttcttcacat ccccaataag aagttggtgt tatacaaaaa 2580 tcttggaaac ctgttaaagc ttgatttttt ctgcaagtgt cacagtttcc tgtacaagtt 2640 gaataaaaat ctgtgtgagt actttggaca ggggctgttg tgtatttttc tgacacttca 2700 taatgaattc ccacactttt gatataaatc acaaattttt tggctgtttc cgaggtctta 2760 tcattcaaca tgaatatagt ccctcctcct cctaaaagag attgttctat catgtatcta 2820 tatttcccgt ctacaacaga atcaaagatc aatgattgtc taggcagaat gttctctggt 2880 atgcttgttt catttttgtt tagagagtct cctgcaatca ttccagaaat tttgtctgta 2940 cgattataag aatctattat accattcctc aatctcttag cttcatacag accagccgat 3000 gttaacccta aagagcttcc tgtataatct gaaaatccat tatacaaagg tttgtttcta 3060 aataaatcta ggtattcgca acctaatctg cattttataa gattatcgat agatgggtgt 3120 gcaatgcaat tctggttttc tatgcaatca ttaggacctt ctataacaat gttagtgcca 3180 aagatacttt ctataatcgt atcttctttt acattacagt aacattgatc tttttcaggg 3240 catttttcaa atttgcttgt aaccaaaaac ggacagcctg gaacataaaa acacccactt 3300 aaacattggg tagtttgagc catagacatg ggcatttgag acaaaatgac caaacctatt 3360 aagatttcag tcacaaattt tagcaaacta aagctcagct tagtgttcac tattagatgg 3420 aaccattcca tgctagtcca cttatgtttg ttgtagtcat gatctgtttc tttggataat 3480 atgggacact ctgaagaatg ttcttttgaa gctttgcttt tgttgcagat gcaaatttta 3540 gtacattcat gtgtgattat gcacaaattg ccacagttag aacatttaaa tggaaaatat 3600 ttccataagc aatttatgag caacaaaata gggtatgtga tcaagcctat aagatcatac 3660 cagagaaaga ggggtttggt tgtcttgttt actaaccacc ggatagggaa atagatcaac 3720 aaagctatca atattaatct tatccaagaa aaattgatgc aggctgtttg tttataaatg 3780 ctttttgaat atttgattat gcaatctcta actcttttgt ttgtttttgg tattttagct 3840 gatttgtcac cgcataagag attgtgctca ccatccaaca tttcctcagt aaaagtgatg 3900 cttgctgatc cagaaaaaga tatgaccttg tgttccacat tttcaccagg cttttttatc 3960 aaataaccca tgatcttctc agggctagtg atgctaacag tgtagggatt agcaaagttt 4020 gatttagtta ttttgcaatc gccagataac ttcacagttt gtaatgatac tgttccatta 4080 gtagggtacg agttataagt tataggataa ttgtcttgtg tcaggctttc tgaaatgaag 4140 aattttgttc caactgaaaa atgccttttg ttgtcaagtt tagtaatggg aataaccggg 4200 actttagaga atctttttgg cagatttaaa gaattgtcac atttttctaa accttctgct 4260 gaatcagaaa cacaggaata tatgacacca ttattttcca cttgataata aacattataa 4320 gtggataccc cttttatctc acattttaat gaagaagcat tcaagcagtt gttaggaaga 4380 tccgagacag agatcgtttt ttgcgtagtt gattcagcaa aaatagggat ggttgattct 4440 tcttctcgta tctggcgggt tccaggagtc tgagattcta gcatcagatt agttaaagtc 4500 tccaagatag ccttgcgttg aattgatgca gcagtgggta cttcattctc agcagaatca 4560 tcataaacct caggatggcc tccacgaatt gtttctactt tggcatctgt ggctctgaag 4620 atcaagaatg ccaacaagac agaactcagg gcaattgtga aaagactcac ttttaccact 4680 agttctagta gttttaaaat tctcatctta gacgtctgct cagattataa tggttatatg 4740 attaatttca agatgtctgg attaaggttt ttgtttgcac tgattgctct 4790 //