ID FJ999765; SV 1; linear; genomic RNA; STD; VRL; 7780 BP. XX AC FJ999765; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate RUK93 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7780 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7780 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; 6e10d1367187fb8639f0d11e0ad20b23. XX FH Key Location/Qualifiers FH FT source 1..7780 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea batatas" FT /isolate="RUK93" FT /mol_type="genomic RNA" FT /country="Uganda:Rukungiri" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0C4" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0C4" FT /protein_id="ACS29487.1" FT /translation="MGKPKLTYKQCIAKWGKAALEAQNNGSKRSVPVGTHQIAANIFAF FT YDAKDYHLFAMGKRNGLTPAAEQLRIAIERGTIYKVQYNCHFCPDCDAIVDSDEGWFCE FT DCDSQFNKRDDNVLDNKNDVARALGGWNAYEDATWASFEAAKADMLEVAPTVGQLEKEI FT RVIEKSAGKRLTAYEEEMLEELAYKLDVAKMNEEKQETVLEETVFQISNDEFPALEGPQ FT VEVANGTIEEHTEENAIEVASEAENTVEFEFANGTTDEPISDAAGARVVATPVVALSAT FT NSRMATGKEKLAEEPKRVMWVTKPKTPAAVPTKPSESAVWIAKPRLASALSIVEPVAKP FT TVRASSGAINIGAMVCPITVAAIESHSHQNEKLNESLNAQDNDATKEEEPVIKYNITFG FT SFNYEVSAKGEQVQAAVKLDDMIEGPDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGSYKSAALRLLKATKVQVFYDGIKDIFEC FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDDPRRVEEEYLMVPLVPIDQHVHEEHSTIS FT KAKWEAHESICEGEVNIAKTFDGKPTASKKKFKTKQAPNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHRNKLCLCGGIDREKKI FT RSSEVRPGWSGVILHRNQVAECDWSKFVFIDDMCVVQGRNLITNKIENALEKKGSNRLK FT QIQFYASSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSRRIDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATIINDDDVLRT FT LGLSGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQTDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSNGDFDILRKYQSIHEFFPNIMSR FT ANKAGMAVIKSETSLSKAFALMNSAKSMDAIHTLIGEDIMEHISGTCLLKNDKTLFSSG FT CKQGVNGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFINEDEMEFYKNQMNQIVLNLGAWPTFDQYLIELRAISLDYPKVRGCPAAIHLVSHVN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFERHPENIFKICASPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLSAQKLFEEANERAYGKQSWNLR FT VIWGACKEVLYAVTHGVCVRVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGDGELYVEQHGKKEEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFTSFE FT IEVPNVVLSQDDMTFERWFQHQVQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDCECETRHKVKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDAVVDFGEKISPNLSSDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0C5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0C5" FT /protein_id="ACS29488.1" FT /translation="GNNSGQPSSVVDNTLILMIAMEYAISKVFVTRPEIRYVCNGDDLL FT INCPRSTANTISEYFKDAFADLSLNYDFDHICDKITSVDFMSHSFMWLEDEQMYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAFIESFGYEDLMTEIENFASFWAKEHGLENVLME FT REKVRGLYINEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQEMEDLDADTTI FT TVVQRETQKARIRDQIETLRAQQIVRPSEAQLQPDVTPTQVVTFEPPRVTGFGALWIPP FT PQRNYMTPAYIEKNKGYVPHSNLIESGLAGESQLTSWFENTCRDYQVSMDVFMSTILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAKTAGYANVQDAWLGIDFLRDTMKLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" FT 3'UTR 7474..7780 XX SQ Sequence 7780 BP; 2376 A; 1397 C; 1891 G; 2016 T; 100 other; taaataaaaa tgatatagag aaaatttgaa agacaagcgt gaacttagca aacttatttg 60 caactcagtt taatttcaag tactttattt taattttatc gaactgtggt gtccgcttag 120 aaacggatca gacgcagaaa tggggaaacc taaactcacc tacaaacaat gcattgctaa 180 gtggggaaaa gccgcacttg aagcgcagaa caacggatcg aaaaggagtg ttcctgttgg 240 aactcatcaa attgcggcaa acattttcgc gttttacgat gcgaaagact accatctatt 300 tgccatgggc aaaagaaatg gactgactcc agcggctgaa caattgagaa tcgcaattga 360 gcgagggacg atttacaagg tgcagtacaa ctgccacttc tgtcctgatt gtgatgcaat 420 tgtcgattct gatgagggat ggttttgcga ggattgcgac tcgcaattca ataagcgcga 480 cgacaatgtg cttgataaca aaaatgatgt cgcacgcgct cttggcggct ggaatgctta 540 tgaagacgcc acctgggcgt catttgaggc ggctaaggcc gacatgcttg aagtagcacc 600 aactgtgggt caacttgaga aagagatcag ggtcatagaa aagtcagctg gtaaaagact 660 caccgcttat gaggaagaaa tgcttgaaga gttggcctat aaactcgatg tggctaagat 720 gaacgaggaa aaacaggaaa cagtacttga agaaactgtt ttccaaattt ccaatgacga 780 gtttccagct cttgaggggc cacaagttga agttgccaat ggaactattg aggaacatac 840 tgaggaaaac gcgattgagg tcgcgagtga agctgaaaat actgtggagt ttgaatttgc 900 aaatgggact actgatgaac caattagtga tgctgctggt gcacgcgtag ttgcaacacc 960 tgtcgtggct ctaagtgcaa caaactccag gatggcaact ggcaaggaaa agttggctga 1020 agaaccaaag agagttatgt gggttacaaa gccaaaaacc cctgccgcag ttcctaccaa 1080 gccatctgag tcggctgtct ggattgccaa gccaaggcta gcatccgcgc tttctattgt 1140 tgaaccagtc gctaaaccaa cagtgagagc tagcagtggc gcgatcaaca taggcgctat 1200 ggtgtgtcct atcacggttg cagcaattga atcacatagc catcaaaatg agaagctcaa 1260 tgagtcccta aacgcacaag ataatgatgc aacgaaggaa gaggaaccag tgatcaaata 1320 caatataact tttggttcat ttaattatga agtgagtgca aaaggggaac aagtgcaagc 1380 tgccgtcaaa cttgacgata tgatagaagg acctgacact gaaccaattc tgatttgcca 1440 gacaggaagt tcccacaaac atgaaaccaa gaaagctgca aaagggcttt ttgttcagga 1500 cagattttcg gtaattggga ataaggttct gtgcaagtca tttcctgcct tcaagaattt 1560 catgaatgag acaagattag gagggattta tagaacaaga aaaggaagtt acaaaagcgc 1620 tgcattgcgt ttattgaagg ccaccaaagt tcaagtattt tatgatggga taaaggatat 1680 ttttgagtgt ccgtattgcc acgtgagcag taatgagcta gagggcctta atggagacaa 1740 ttgcgaaaaa tgcaaggatc tgttctataa acacattgat gacccaagga gagttgaaga 1800 ggaatatctt atggttcctc tcgtgcccat cgatcagcat gttcatgaag aacatagcac 1860 catcagtaag gctaaatggg aagcgcatga atctatatgt gaaggagaag tgaacattgc 1920 taagactttt gatggcaaac caactgcaag caagaagaag ttcaaaacta agcaagctcc 1980 aaatgttgca aacataccac ttgatgactt tatgcaagaa ctagttgaaa tctgtcttga 2040 gagaaacacc cctattgaaa tcattggggg tgtgaaatct ttcaacgtgg taaagttaag 2100 gcatactacg agagatatca gcaagtctgg tgaggatgat atgtatccaa ctgaaaggga 2160 gtggttctgc cacaggaata agttatgttt atgtggtggg attgatcgtg agaagaaaat 2220 tagaagttcc gaggtgcgcc caggttggag tggagtaatc ttacatagga atcaagtggc 2280 agaatgcgat tggagcaagt ttgttttcat tgatgacatg tgcgtggtgc aaggtagaaa 2340 cttgatcacg aataagattg agaatgcact tgaaaagaaa gggtctaata gacttaaaca 2400 gatacaattc tatgcaagtt ctgttatacc caatttcaag gacgaatttg acagggctag 2460 ccgtctaaaa gctgatcatg aaccggatga gtcgtctaac aatgaactca ttggtaggct 2520 agccaaactt gttgcagcag tcattccaaa aggccactta tattgcaaaa catgttgttt 2580 tagggttatc aagagcaggc gcatagatat agtcaacgcg ctgaataagg ctaagcagcg 2640 tggtgaacgg gatgagttta tttatgacga gctcattaaa ctttttgagt tacaagcgcc 2700 accaccctat aaaattgcaa cgatcatcaa cgatgatgat gtgttgcgta cactaggatt 2760 gagtggagac ctatatagtg ggcgcctaag tctcataatg caacatttgc aaggattgca 2820 tacgtcaata tcaatgcttc accaatcact tgcaggagct caaactgacc aacaaattga 2880 caggcaagca ctccacaacc aagtgcgaat tttgcatcag agaaatgagg aacacatgcc 2940 tttcctaaag aaagcagttg atgagattca gcttttaaac gcaacagatc aggttgccaa 3000 tgctcgggaa ttatacttgg acactagggc aactagtaat ggagatttcg acatcttgag 3060 aaaataccag agcatacatg aattctttcc caatattatg agccgggcca ataaagcagg 3120 gatggcagtc atcaaatctg agacttcatt gagcaaagct tttgccctta tgaacagtgc 3180 taagtcgatg gacgctattc atacgcttat aggggaggac atcatggaac atattagtgg 3240 tacttgcttg ctgaagaatg ataaaacact tttctcaagt ggttgcaagc aaggtgttaa 3300 tggtagtaag atgtatggcc ctctttgtcc gaccaagcag catgtgagaa ttcaccgagt 3360 tgaatctaat atgcaaattc ctttaccaac attccacgat gcaaccgtct gggagttcaa 3420 cgaaggttat tgctatgcca atcaatttgc cataatggtt ggtttcatca atgaggacga 3480 aatggagttt tataagaatc agatgaatca aattgtgttg aacttagggg cttggccgac 3540 ttttgatcaa tacttaattg agctacgagc aatctcgctt gattatccaa aagttagagg 3600 gtgtccagct gctatccatt tagtttccca tgtgaacaag cttatccatg ttttaggaca 3660 atttggaaca ataaatcaag gttggcatgc acttgaagtg gccactgtag gtgagcttgt 3720 ggacttgtgc cataagaaag ttgaaggtga aatgttaact tataaagttg gtggcatata 3780 tgactgggtg actaagaaga atgctttcat cgatctattt gaacggcatc cagaaaatat 3840 attcaagatt tgtgcatcgc catcagtgtt gtggttattt gctcgcagct gcgaaaagca 3900 tgattttatc aactacatca tggccagaga tcattcacta gtgggtctgt tcatcaaatt 3960 ggaatacgtc ggcaagcatc ttcatatttt ccaaagtgtc gacgatgttt gtgttgaata 4020 cgcagcgtct atgagggaaa tcatcgaaga gcacgctgat atccatgggc tgcgggattc 4080 agtagtggat agaatggttc atgcatatca caatgaggtg agggaagcaa ataaatatga 4140 gctagttgac agaatccttg aaaaaaacat tggattaatc gcgaaagaaa tttcatcgcg 4200 aaagctcata acaatgtatc atcaagattt gttctcttgg cacgaatggc agcgtttgaa 4260 gttaatgcca cactccttga gtgcgcagaa actcttcgaa gaggcaaacg agcgcgcata 4320 cgggaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tgttatatgc 4380 agtcacacac ggagtttgtg taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt 4440 agtatatggc ttctatggta gaacacgagc aatggtgaca agctgggcca gtgaggcctg 4500 gggagctatt tttacgtcgt gtttgagagc attagttgtc atggtggtta cggcatacat 4560 ctcaacttgg atccctaaga ttaggaagat gattaaacgc gaaaagaaac agtttgagga 4620 gcttggggac ggagagttat atgtggagca acatggcaaa aaggaagagg cgtttttatt 4680 caagatttgc gccatttttg cacttatagc aggtatagtt gactacgagt ggggagcagc 4740 tgcatgcgcg acaatgaata aagttaagag tatatgcact gttcttggat ccgttggaat 4800 tgaaagccat gctaatgaac ctgatgacaa agttgagcag gacttgaagg aatcccttaa 4860 attcacatct tttgagattg aggtgccaaa cgtagtccta tcacaggatg atatgacttt 4920 tgaaaggtgg ttccaacatc aggttcaata tggcaacgtg tgtgcggacc caatttatag 4980 tggtccgtta cgcatgttag cgattacaga aaattctgcg agagagctag caatgaacat 5040 tcgcacatca ggagaaaccg acttgcgtgt ttatagtggt gttggtgggg gaaagtcaac 5100 aaggttaccc aaggaattaa gcatgtttgg gcatgtgtta atttgtgttc ccacgagagt 5160 tctggcagaa agcttattaa catcattcat ggtactattt aatatggatg ttaatgtggc 5220 ttatcgcgga aggatacata ctggtaacgc accaatcaca ataatgactt atggttacgc 5280 attcaacttc ttggtgcata aaccaatgga attaaaccga tatgattacg tgttgctaga 5340 tgaaattcac actaatcctg ttgaatttgc gcctttgttc tctttcatta aaaccacgga 5400 tccaaagaag aaaattgtta agttgtcagc aactcatgct ggtatggact gcgagtgcga 5460 gaccaggcac aaggttaagg ttgaaacttt gagcgaaatg ccaatcgaaa gctgggtttc 5520 catgcaaggc tccggagttg ttggcgatgc gacatctgtt ggagatgtaa ttttagtctt 5580 tgttgcatca tttaaggatg tcgacacatg cgctaatgga ttgagatcta aaggcttcaa 5640 agttttgaaa gttgatagta gaaactttag acgtgatgca gatgtggaca aacagatcca 5700 atcacttggt gaaggaaaga aattcatagt cgccacaaat ataattgaga atggagtgac 5760 attcaacatt gatgctgttg ttgattttgg cgagaaaatt agccccaatc tctcgagcga 5820 tgagcggtgt atcactttgg gaaggcagag aatatcgcga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggg aataacagtg ggcagccttc atcggttgtc 6000 gacaacacat taatcttgat gattgccatg gagtatgcga tatcgaaagt cttcgttaca 6060 cgccctgaaa tcagatacgt ttgcaacgga gatgatcttt taataaattg cccaaggagc 6120 accgcaaata ccattagtga gtatttcaag gatgcgtttg ccgacttaag tttgaattat 6180 gactttgatc acatttgtga taaaattaca agtgttgatt ttatgagtca cagtttcatg 6240 tggttggaag atgagcagat gtacatcccg aagttggaca aggagcggat tgtggcaatt 6300 ttggagtggg agagaagcga cgagcaattc agaacaagga gcgccttaaa cgcggctttc 6360 attgagagtt ttggatatga agatctaatg actgagattg agaatttcgc atctttttgg 6420 gcaaaagagc atggcctcga aaatgtgctg atggaacgag aaaaggttag aggtttgtac 6480 atcaacgaag atttcgatgc gtcagccttt gaaaagttct acccggaaac attttcgcca 6540 tttgatgttt atgttgaacc acatgcatca acatccaaaa caatcgaaga actgcagcaa 6600 gaaatggagg acttggacgc agacacgaca atcactgtgg ttcagaggga gacacagaag 6660 gcaagaataa gggaccaaat cgagacactt agagcacaac aaattgtgag accttctgag 6720 gcacagctac aacctgacgt gactcccacg caagttgtca cgtttgagcc accaagagtc 6780 actgggtttg gtgctttatg gattccaccg ccacagagga attacatgac gccagcttac 6840 atcgagaaaa ataaaggcta tgttccacac tcaaacttga ttgaatctgg attagctggt 6900 gaatctcagt tgactagttg gttcgagaac acgtgcaggg attatcaagt cagtatggat 6960 gtcttcatga gcacaatact gccagcatgg attgtcaatt gcataatcaa tggaacgtcg 7020 caggagcgca ctaatgagca tacgtggagg gctgtgatca tggcaaacat ggaagatcaa 7080 gaagtgctct attatcccat taagcctata attatcaatg ctcaaccaac tctgaggcaa 7140 gtgatgcgcc attttggcga gcaagctgtt gctcaataca tgaatagcct tcaagttgga 7200 aaacctttca cagtgaaagg agccaaaact gctgggtacg ccaatgttca agatgcctgg 7260 ctaggcattg actttcttcg ggacacaatg aagctgacaa caaagcagat ggaagttaag 7320 caccaaatta tcgctgcaaa cgttacaagg cggaagatcc gtgttttcgc tcttgcagca 7380 ccgggagatg gcgatgaatt agacacagaa aggcacgttg ttgacgatgt agctagaggt 7440 cgtcatagtc tgagaggagc tcaactcgat taaatgagca tgttatcctt aatttcaact 7500 gtgtgttttc attttaataa cgttttatgc tttgtgtttg tctgttgtgg cacttgaacc 7560 aggtacagct ggcaggtgtt tcggcatggt gtggttagac aattggttcg caccggtagt 7620 ctaagaagcg ctgtgtatca cgtggttggt taattcatag ttacgtgggt taatcaagaa 7680 gcgtctatcg cccaaaaggg taccagaaaa tggttgcgtc attcgtggcg tgattagttt 7740 ttggagtttg gctaggtaac ttgtcgcctt cccaaaagcc 7780 //