ID FJ999763; SV 1; linear; genomic RNA; STD; VRL; 7780 BP. XX AC FJ999763; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate RUK72 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7780 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7780 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; 1852f205667985b1562acf71affbd449. XX FH Key Location/Qualifiers FH FT source 1..7780 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea batatas" FT /isolate="RUK72" FT /mol_type="genomic RNA" FT /country="Uganda:Rukungiri" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0C0" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0C0" FT /protein_id="ACS29483.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNDGSKRSVSVGTHQIAANIFAF FT YDAKDYYLFAMGKRGGLTPAAEKLRIAIERGTIYKVQHDCHFCPDCDEIIDSEEGWFCE FT DCGSQFNKRDDNVLGNKNDVVRALGGWAEYEDATWASFEAAKADMLEVAPTVGQLEKEI FT RAIEKTAGKRLTAYEEEMLEELAHKLDVAKMNEEKQEEVFEETIFSISNDEFPALEGPQ FT DETVNEIIEEHTDGIMTEAAKEVERSAEFETTFGETDEPINDAADAHVVAAPVVAMNVA FT KSGTVIDKEELIEKPKTTMWVAKPKTLTAIPATPFKSAVWVAKPRLASALSIVEPIAKS FT AVKACNDVINIGAMVCPIMVPAVESHSHQEEKLNEIPNAQVDDATKEEEPVVKYNITFG FT SFNYEVCTKGERVQAAVQLDEMIEGPDTEPILICQTGSSHKSETKKAAKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDIFEC FT PYCHASSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVNIVKIFDGKPTASKKKFKTKQAPNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDIGKSGEDDMYPTEREWFCHKNKLCLCGGIDREKKI FT RSSEVHPGWSGVILHTNQVVECDWSKFVFIDDICVVQGRNLITNKIENALEKKGASRLR FT QIQFYANSVIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSKRIDVVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATITDDGDVLRT FT LRLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFIKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIYEFFPNIMSR FT ANKAGMTAIKSETSLSKAFALMNSAKSMDAIHTLIGEDVIEHINGACLLKNDKTLFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQLAIMV FT GFINEDEMEFYKNQMNQIVLSLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGAMLTYKVGGIYDWVTKKNAFID FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMIHAYHNEVKEANKYELVDRILEKN FT IGLIAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFDEANERTYGKQSWNLR FT VIWGACKEVLFAVTRGVCVKVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEDLGDGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPEDKVEQDLKESLKFTSFE FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG FT ETDLRVYSGVGGGKSTKLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPIELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDCECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVTLVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSGDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0C1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0C1" FT /protein_id="ACS29484.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPEIKYVCNGDDLL FT INCPRSTASAISEHFKDAFADLSLNYDFDHVCDAITDVDFMSHSFMWLDAEQIYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGHEDLMVEIEKFAHFWAKEHGLDDVLME FT REKVKDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQQELEDLDADTTI FT TVVQRETQKARIRDQIETLRAQQIVRPPEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR FT QQRSYMTTAYIEKIKAYVPHSNLIESGLASESQLTSWFENTCRDYQVSMDVFMSTILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGTVTAGYANVQDAWLGIDFLRDTMKLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVSRGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" FT 3'UTR 7474..7780 XX SQ Sequence 7780 BP; 2385 A; 1374 C; 1874 G; 2047 T; 100 other; taaataaaaa tgatatagag aaaatttgaa agaaaagtgt gaacttagca aacttattcg 60 caattcagct tcattttaaa tactttattt caattttatc gaactgtggt gtccgcttag 120 aaacggatca gacgcagaaa tggggaaatc caaactcact tacaaacaat gcattgctaa 180 gtggggaaaa gccgcacttg aagcgcaaaa cgacggatcg aaaaggagtg tttctgttgg 240 cactcatcaa attgcggcaa acatttttgc attctatgat gcaaaagatt actatctatt 300 tgccatgggc aaaagaggtg gactgactcc agcagctgag aaattgagaa ttgccattga 360 gagaggaacg atttacaagg ttcagcacga ctgtcacttc tgtcccgatt gtgatgaaat 420 cattgattct gaggagggat ggttttgtga ggattgcggt tcgcaattca acaagcgcga 480 cgacaatgta cttggtaaca aaaatgacgt cgtacgcgct cttggcgggt gggctgaata 540 tgaagacgcc acctgggcgt cgtttgaggc tgctaaagct gacatgctcg aagtagcacc 600 aactgtgggt caacttgaga aagagatcag agccatagag aagacagctg gcaaaagact 660 caccgcttat gaggaagaga tgcttgaaga gttggcccac aaacttgatg tggccaagat 720 gaacgaggaa aaacaagagg aggttttcga agagaccatt ttctcaattt ccaatgatga 780 atttccggct cttgaggggc cgcaggatga aacagtcaat gaaattattg aggagcatac 840 tgatggaatc atgactgaag ccgcgaaaga ggttgagagg tctgcagagt ttgaaactac 900 atttggagaa actgatgaac caattaacga cgctgctgat gcgcacgtag ttgcggcacc 960 tgtcgtggct atgaatgtgg ccaaatctgg aacagtaatc gacaaagagg agttaattga 1020 aaaaccaaaa acaaccatgt gggttgcaaa accaaaaact cttactgcaa ttcctgccac 1080 gccgtttaag tcggctgtct gggttgctaa gcccaggcta gcatctgcac tttccattgt 1140 tgaaccaatc gctaaatcag cagtgaaagc ttgtaatgat gtaattaata taggcgctat 1200 ggtgtgtcct atcatggtac cagcagttga atcacatagc catcaagagg aaaagcttaa 1260 tgagattcca aacgcacaag ttgatgatgc aacgaaggag gaagagccag tagttaaata 1320 taatataact tttggttcat tcaattatga agtgtgtacg aaaggggaac gagtgcaagc 1380 tgctgttcaa cttgatgaga tgattgaagg acctgatact gaacccattc tgatatgcca 1440 aacaggaagt tcccataaat ctgaaactaa gaaggcggca aaagggcttt ttgttcagga 1500 tagattctct gttattggga ataaggttct gtgcaagtca tttcctgctt tcaagaactt 1560 tatgaatgaa acaaggttag gaggaattta cagaacaaga aaagggaatt ataaaaacgc 1620 tgcgctgcgt ttattgaagg ccaccaaagt tcaagtattc tatgatggga taaaggatat 1680 tttcgagtgt ccttattgcc acgcgagcag taatgaatta gagggcctta atggggataa 1740 ttgtgaaaaa tgcaaggatc tattttataa acacattgat gacccgagaa aagttgaaga 1800 agaatatctg atggttcctc tcgtgcccat tgatcagcac gtccatgaag aacatagcat 1860 catcagtaag gctaaatggg aagcgcatga atccatctgt gaaggagaag taaacatcgt 1920 caagattttt gatggcaaac caactgcaag caagaagaaa tttaaaacca agcaagctcc 1980 aaatgttgca aatataccgc ttgacgactt tatgcaggag ttggttgaaa tttgtcttga 2040 gaggaacact cctattgaaa ttattggggg tgtgaagtct tttaatgtag ttaagttgag 2100 acacaccacg agagacattg gtaaatctgg tgaagatgat atgtatccaa ccgagaggga 2160 gtggttttgc cacaagaata agctatgttt gtgtggcgga attgatcgtg agaagaaaat 2220 cagaagctcc gaggtacacc caggttggag tggagtgatc ttgcatacga atcaagtggt 2280 ggaatgtgat tggagcaagt ttgttttcat cgatgatata tgcgtagttc aaggtagaaa 2340 cttaatcaca aacaagattg agaacgcact tgaaaagaag ggggccagta gactgagaca 2400 gatacaattt tatgcaaatt ctgtcatacc taatttcaaa gatgaatttg acagagctag 2460 tcggctgaaa gccgatcatg aaccagatga gtcgtctaac aacgaactca ttggcaggct 2520 ggctaagctt gttgcagcag tcattccaaa aggccattta tactgcaaaa catgctgttt 2580 tagggtcatc aagagcaagc gcatagacgt agttaatgca ttaaataagg ctaagcagcg 2640 tggcgaacga gatgagttca tttatgacga gctcattaaa cttttcgagc ttcaagcacc 2700 accaccatat aagattgcaa cgataaccga cgatggcgac gtgttgcgta cattaagatt 2760 gggtggagac ctatatagtg ggcgactgag tcttataatg caacatttac aggggttgca 2820 cacgtcgata tcaatgcttc atcagtcact cgcaggggcc cagaacgacc aacaaattga 2880 taggcaagcg ctccataacc aggtacgaat cttacatcaa agaaatgagg agcatatgcc 2940 cttcataaag aaagcagttg atgaaatcca gttgttaaat gcaacagacc aggttgccaa 3000 tgctcgggaa ttgtacttgg acactagggc aactagtact ggagacttcg acattttgcg 3060 aaaataccag agcatatatg agttctttcc caatattatg agccgagcca ataaagcagg 3120 gatgacagct atcaaatctg aaacatcatt gagcaaagct tttgctctta tgaacagcgc 3180 taagtcgatg gacgccattc atacgctcat aggggaagac gtcatagaac acatcaatgg 3240 agcttgcttg ctgaagaacg ataagacact tttctcaatc ggttgcaagc aaggtgttga 3300 tggtagcaag atgtatggcc cgctttgtcc gactaaacag catgtaagaa ttcaccgagt 3360 tgagtccaac atgcaaattc ctttgccaac atttcacgat gcaaccgtct gggagttcaa 3420 tgaaggttac tgctacgcta atcaattagc tataatggtt ggattcatta atgaggatga 3480 aatggaattt tataagaatc aaatgaatca aattgtgttg agcttagggg cttggccgac 3540 ttttgagcaa tatttgattg agctacgagc aatttcgctt gattatccaa aagttagggg 3600 gtgtccagct gctattcatt tagtttctca tgcaaacaag cttattcatg ttttgggcca 3660 atttggaaca ataaatcaag gttggcatgc acttgaagta gcaactgtag gcgaacttgt 3720 ggacttgtgt cataagaaag ttgaaggtgc gatgttgact tataaagttg gtggcattta 3780 tgactgggtg actaagaaga atgctttcat cgatctattt gaacaccatc cagaaaatat 3840 attcaaaatc tgtacatcac catcagtgtt gtggttattt gctcgcagct gtgaaaagca 3900 tgatttcatc aactacatca tggcaagaga ccattcattg gtgggtttgt tcattaaatt 3960 ggaatatgtt ggtaagcatc tccacatttt ccagagtgtt gatgatgttt gtgttgaata 4020 cgcagcgtct atgagggaaa tcattgaaga gcacgccgac attcatggac tgcgggattc 4080 agtggtggat aggatgattc atgcatatca caacgaggtg aaggaggcaa ataaatatga 4140 gttggttgac agaattcttg aaaaaaacat tggattaatc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 attaatgcca cattccttga atgcgcagaa actcttcgac gaggcaaacg agcgcacgta 4320 cgggaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tattatttgc 4380 agtcacacgc ggagtttgtg taaaagtcaa aggaacaact gtgcgttgtg ccgacgccgt 4440 agtatatggc ttctatggta gaacacgagc aatggtaaca agttgggcta gtgaggcctg 4500 gggagctatt tttacgtcgt gtctaagagc attagttgtt atggtggtca cggcatacat 4560 ctcaacttgg atccctaaga ttaggaagat gattaaacgt gagaagaagc agtttgaaga 4620 tcttggagat ggggagttgt atgttgagca acatggcaaa agagaggagg catttttatt 4680 caagatttgt gccatctttg cacttatagc aggcatagtt gactacgagt ggggggcagc 4740 cgcatgcgct acaatgaaca aagtcaagag tatatgcact gttcttgggt ctgttgggat 4800 tgagagccac gccaatgagc ctgaggataa agttgagcag gacttaaagg aatcccttaa 4860 attcacatct tttgagatcg aagtgccaaa tgtagttttg tcacaggatg acatgacttt 4920 tgaaaggtgg ttccaacatc aaatccaata tggtaacgta tgtgcagatc ctatctatag 4980 tggtccacta cgcatgctag caattacaga aaattctgca agagagctag caatgaacat 5040 tcgcacatca ggagaaacag atttgcgtgt ttatagtggt gttggtggag gaaaatcaac 5100 aaagttacct aaggaactca gcatgtttgg gcatgtgtta atttgtgttc ccacgagagt 5160 tctagcagaa agtctattaa catcattcat ggtacttttt aatatggatg ttaatgtggc 5220 ttatcgggga agaatacaca ctggtaacgc accgatcaca ataatgactt atggctacgc 5280 attcaacttc ttggtgcaca aaccaataga actaaaccga tatgattatg tgttgctaga 5340 tgagattcac accaatcccg ttgaatttgc acctttgttc tctttcatca aaaccacaga 5400 tccaaagaag aaaattgtta agttatcagc aacccatgcc ggaatggact gtgagtgtga 5460 aaccaggcac aagattaagg tagaaacctt gagcgaaatg ccaattgaaa gctgggtttc 5520 tatgcaaggc tctggagtcg ttggcgacgc aacatcagtt ggggacgtga ctctagtttt 5580 tgttgcatct ttcaaggatg tcgacacatg tgccaacgga ttgcgatcta aaggctttaa 5640 agttttgaaa gttgatagca gaaattttag acgtgatgca gatgtggata agcaaatcca 5700 atcactgggc gaagggaaga agttcatagt cgctacaaac ataattgaaa atggagtgac 5760 attcaacatt gatgttgttg ttgattttgg cgagaaaatc agtcctaatc tttcgggtga 5820 tgagcgttgt atcacattgg gaaggcagag aatatcgcga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggc aataacagtg ggcagccctc aacagttgtt 6000 gataacacgt tgatcctgat gattgctatg gaatatgcga tagctaaggt ttttgtcaca 6060 cgccctgaaa tcaagtatgt ttgtaatggg gacgatctct taattaattg tccgagaagc 6120 actgcaagcg ccatcagtga gcatttcaaa gacgcgttcg cagacttaag cttgaactat 6180 gattttgatc atgtttgtga tgcaattaca gatgttgact tcatgagtca tagcttcatg 6240 tggctagatg ctgagcagat atatatacca aagctggaca aggagcgaat cgtggcaatt 6300 ttggagtggg agagaagtga tgagcaattt agaacaagga gcgccttgaa tgctgcttat 6360 attgagagtt ttggacacga agatttaatg gttgaaattg aaaaattcgc tcacttttgg 6420 gcaaaagagc atggtctcga tgatgtcttg atggaacgag aaaaagttaa agacttgtac 6480 gtaaatgaag atttcgatgc gtcagccttt gagaagttct atccggaaac attttcgcca 6540 tttgatgttt atgttgaacc acatgcgtcg acatccaaaa caattgaaga gttgcagcaa 6600 gaattggagg atttggatgc ggacacaaca atcactgtag ttcagaggga aacacagaag 6660 gcaaggataa gggaccaaat tgagacactt agggcacaac aaattgtgag acctcctgag 6720 gcacagctac agcctgacgt gactcccacg caaattgtta cgtttgaacc accgagagtc 6780 actggatttg gtgctttgtg gattccgcgc caacaaagga gctacatgac aacagcatac 6840 atcgagaaga taaaggctta tgttccacac tcaaacttga ttgaatctgg attagctagt 6900 gaatctcaat tgactagttg gttcgagaac acgtgtagag attatcaagt tagtatggat 6960 gtcttcatga gcacaatact gccagcatgg attgtcaatt gcataatcaa tggaacgtca 7020 caggagcgca ctaatgagca tacgtggagg gctgtgatca tggcaaatat ggaagatcaa 7080 gaagtacttt attatcccat caagcccatt atcatcaatg ctcagccaac tctgaggcag 7140 gtgatgcgcc attttggcga gcaagctgtt gcacaataca tgaatagcct tcaagttgga 7200 aaacctttca cggtgaaagg caccgtaact gctggttacg ccaatgttca agacgcttgg 7260 ctaggtattg actttcttcg ggatacaatg aagttgacaa caaaacagat ggaagttaag 7320 caccagatta tcgcagcgaa cgttacaagg cggaagattc gtgtttttgc tcttgcagct 7380 ccaggagatg gcgatgaact ggacacagaa aggcacgttg ttgacgatgt ctctagaggt 7440 cgtcatagtc tgagaggagc tcaactcgac taaatgagca tgttatcttt aatttcaact 7500 gcgtgtttta ttttagttac gttttatgct ttatgttcgt ttgttgtggc acttgaacca 7560 ggtacagctg gcaggtgttt cggcatggtg tggttagaca attggttcgc accggtagtc 7620 taagaagcgc tatgtatcac gtggttggtt aattcatagt ccatatgggt tgatcaagaa 7680 gcgtctatcg cccaaaaggg taccagaaaa tagttgcgtc attcgtggcg caattagttt 7740 ttggagtttg gctaggtaac ttgtcgcctt tccaaaagcc 7780 //