ID FJ999762; SV 1; linear; genomic RNA; STD; VRL; 7784 BP. XX AC FJ999762; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate KAP90 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7784 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7784 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; 18bfc5adbcde560e901e9a6383ffe494. XX FH Key Location/Qualifiers FH FT source 1..7784 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea spathulata" FT /isolate="KAP90" FT /mol_type="genomic RNA" FT /country="Uganda:Kapchorwa" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B8" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0B8" FT /protein_id="ACS29481.1" FT /translation="MGKPKLTYRQCIAKWGKAALEAQNNGSKRSVPVGTHQIAANVFAF FT YDVKDYHLFSMGKRGGLTPAAEQLIIATERGTIYKVQYDCHFCPDCDAVVDSDEGWYCE FT DCGSQFNKRDDNVLGNKNDVARALGGWTEYEDATWASLEAAKADMLEVAPTVGQLEKEI FT RAIEKSAGKRLTAKKKEMLEELAYKLDVAKMNEEEQETVSEEAVFSISNDEFPTLERPQ FT AEVVNESIEEHTEENAIEVASKVGKFVESESTDKTTDEPICDAADAHVVMTPAVTLSTT FT NSGMVIDKEKLVEKPRIVAWVTKLKTPAAVPAVPSKSAVWVAKPRLASILPTVEPVAKS FT TVKACGNVINIGAMVCPITVAAIESHSHQNEKLTEASDAQVNDATKEDEPVVKYNITFG FT SFNYEVSAKGEQVQAAVQLDEMIEGPDTEPILICQTGSSHKSETKKAAKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDIFEC FT PYCHISSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVDIVKIFDGKPTASKKRFKTKRAPNVANVPLDDFMQELVEICLER FT NTPIEIIGGVKFFNVVKLRHTTRDISKSGEDDMYPTEREWFCHKNKLCLCGKIDREKKV FT KSSEVRPGWSGVILHRDQVAECDWNKFVFIDDICVVQGRNLITSKIENALEKKGATRLK FT QIQFYASSVVPNFKDEFDRASRLKADHEPDESSNNELVGRLAKLVAAVIPKGHLYCKTC FT CYRVIKSKRVDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATIINDDDMLRT FT LGLGGELYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHDQVRILHQRNE FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSIYEFFPNVMSR FT ANKAGMAVIKSETSLSKAFALMNSAKSMNAVHTLIGENVIEPYDGACLLRNDKTCFSIG FT CKQSVDGSKMYVPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFVNEDEMEFYKNQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFEHHPENIFKVCTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFVKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLVAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFEEANERAYGKQSWNLR FT VIWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQYEDLGDGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFASFE FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG FT ETDLRVYSGVGGEKSTGLPKELSMFGHVLVCVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDCECETRHKLKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B9" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0B9" FT /protein_id="ACS29482.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPNIKYVCNGDDLL FT INCPRGIASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAEKHGLNDVLME FT REKVRDLYVSEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR FT QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIESTCRDYQVSMDVFMTTVLPA FT WIVNCIINGTSQERTNEHTWRAVVMANMEDQEVLYYPIKPIIVNAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMPLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" XX SQ Sequence 7784 BP; 2341 A; 1386 C; 1913 G; 2044 T; 100 other; taaataaaaa tgatatagag aaaatttgaa agaaaagcgt gaacttagca aacttattcg 60 caactcagct ttactttaaa cactttattt taattttatc gaactgtggt gtccgctttg 120 aaacggatca gacgcagaaa tggggaaacc taagctcact tacagacaat gcattgctaa 180 gtgggggaaa gctgcacttg aagcgcaaaa caatggatcg aaaaggagtg tccctgttgg 240 aactcatcaa attgcagcaa atgtctttgc gttctatgac gtaaaagact accatctttt 300 ttccatggga aaaagaggtg gattgactcc agcagctgag cagctgatta ttgcaacgga 360 acgaggaaca atttataagg tgcagtacga ctgccacttc tgtcctgatt gcgatgcagt 420 tgttgattcc gacgaaggat ggtattgcga ggattgcggt tcgcaattta ataagcgcga 480 cgacaatgtg cttggcaaca aaaacgatgt cgcacgcgct ctcggtgggt ggactgaata 540 tgaagacgcc acctgggcgt cacttgaggc tgctaaggct gacatgcttg aagtagcacc 600 gaccgtgggt caacttgaaa aagagatcag agccatagaa aagtcagctg gcaaaagact 660 caccgctaag aagaaagaaa tgcttgaaga gctggcctac aaacttgatg tggccaagat 720 gaacgaagaa gaacaggaga cagtttccga ggaggctgtt ttctcaatct ccaatgatga 780 atttccgact cttgagaggc cacaagctga agtagtcaat gaatctattg aagaacatac 840 tgaagaaaac gcgattgaag tcgcgagcaa agttggaaag tttgtagagt ctgaatctac 900 agacaagact actgatgaac cgatttgcga tgctgctgat gcgcacgtgg tcatgacacc 960 tgctgtgact ctaagtacaa caaattctgg gatggtgatt gacaaggaga agttggttga 1020 aaaaccaaga atagttgctt gggttacaaa gctaaaaact cctgctgcag ttcctgctgt 1080 accgtctaag tcggccgtct gggttgctaa gcctaggcta gcatccatac ttcccactgt 1140 tgagccagtc gctaagtcga cagtgaaagc ttgcggtaat gtgatcaata taggtgctat 1200 ggtgtgtcct atcacggtgg cagcaattga atcacatagt caccaaaatg aaaagcttac 1260 tgaggcttca gacgcacaag ttaatgatgc aactaaggag gacgaaccag tggttaaata 1320 caatataacc tttggttcat tcaactatga agtaagtgcg aaaggagaac aagttcaagc 1380 tgctgttcaa cttgacgaga tgatagaagg acctgacact gaacctatat taatttgcca 1440 aacaggaagc tcccataaat ctgaaactaa gaaggcggca aaagggcttt ttgttcagga 1500 cagattctct gtgattggga ataaggttct gtgcaagtca ttccccgctt tcaagaattt 1560 tatgaatgaa acaaggttgg gaggaattta caggacaaga aaagggaact acaaaaacgc 1620 tgcattgcgt ctactgaagg caactaaagt tcaagttttc tatgatggga taaaggatat 1680 tttcgaatgt ccatattgcc atataagcag taatgaactg gaaggtctta atggggacaa 1740 ttgtgaaaaa tgcaaggatc tattttataa acacattgat gacccaagaa aagttgagga 1800 agagtatctt atggttcctc tcgtgcccat tgatcaacat gttcatgaag agcatagcat 1860 cataagtaag gctaaatggg aagcgcacga atccatctgt gaaggagaag tggacatagt 1920 caagattttt gatggcaagc caactgcaag caaaaagaga tttaaaacca agcgagctcc 1980 aaatgttgca aatgtaccgc ttgatgactt tatgcaggaa ctagttgaga tttgccttga 2040 aagaaacacc cctattgaaa taattggggg tgtgaaattt ttcaatgtag ttaagttgag 2100 gcatactacg agagacatta gcaaatctgg cgaggatgat atgtatccga ctgagaggga 2160 gtggttctgt cacaagaata agctatgctt gtgtggcaaa attgatcgtg agaagaaagt 2220 caaaagctcc gaggtgcgtc caggttggag tggagtgatc ttacacaggg atcaagtggc 2280 ggaatgtgat tggaacaagt ttgttttcat tgatgacata tgcgtggtgc aaggtagaaa 2340 cttaatcact agcaagattg agaatgcact tgagaagaaa ggggccacta gacttaagca 2400 gatacaattc tatgcaagct ccgttgtgcc caatttcaag gacgaattcg atagggctag 2460 tcggctgaaa gctgatcacg aaccagatga atcgtccaac aatgaactcg ttggcaggct 2520 ggctaagctt gttgcagcag tcattccgaa aggccattta tactgcaaaa catgttgtta 2580 tagggttatt aagagcaagc gcgtagacat agtcaacgca ctgaataagg ccaagcagcg 2640 tggtgaacgg gatgagttta tttatgacga acttatcaaa ctttttgagc tacaagcacc 2700 accaccatat aagattgcaa cgataatcaa tgatgacgat atgttgcgaa cgttagggtt 2760 gggtggagag ctatatagtg gacgactgag tctcattatg caacatctac agggattaca 2820 tacgtcaatc tcaatgcttc accaatcact tgcaggggcc cagaatgacc aacaaattga 2880 tagacaagcg ctccacgacc aggtgcggat tctacatcag agaaatgaag agcatatgcc 2940 tttcttaaag aaagcagtgg acgaaattca gctcttaaat gcaacagatc aggtcgccaa 3000 tgctcgagaa ttgtacttgg acactagggc gactagtact ggggatttcg acattttgcg 3060 gaaatatcag agcatatatg agttctttcc caatgttatg agccgagcca ataaagcagg 3120 gatggcagtt atcaaatctg aaacatcatt gagcaaagct tttgccctta tgaacagtgc 3180 taaatcgatg aacgcagttc acacgctcat aggagaaaac gtcatagaac cgtatgatgg 3240 agcgtgctta ctgaggaatg acaagacatg tttctcaatt ggttgcaagc aaagtgttga 3300 tggtagcaag atgtatgtcc cgctctgtcc gaccaaacag cacgtaagaa ttcaccgagt 3360 tgaatctaac atgcaaattc ctttgccaac atttcatgac gccactgtct gggagttcaa 3420 cgaaggttat tgctacgcta atcaatttgc tattatggtt ggttttgtca atgaggatga 3480 aatggagttt tacaagaatc aaatgaatca agttgtgttg aatctagggg cttggccgac 3540 ttttgagcaa tatttaattg agctacgagc aatctcgctt gattatccga aagtcagggg 3600 gtgcccagct gctattcatt tagtttccca tgcaaacaag cttattcatg ttttgggaca 3660 atttggaaca ataaaccaag gttggcatgc gcttgaagta gcgactgtgg gcgaactagt 3720 agacttgtgc cataagaaag ttgaaggtga gatgttgact tacaaagttg gtggcattta 3780 tgattgggtg actaagaaga atgctttcat cgatttattt gaacaccatc cagaaaacat 3840 attcaaagtc tgcacatcac catcagtgtt gtggttattt gctcgcagct gcgagaagca 3900 tgactttatc aactacatca tggccagaga ccactcgttg gtaggtctgt ttgttaaatt 3960 ggagtatgtt ggtaagcatc ttcatatttt tcagagtgtt gacgatgttt gtgttgaata 4020 tgcagcgtct atgagggaaa tcattgaaga gcacgctgac attcatgggc tgcgggattc 4080 agtggtagat agaatggttc atgcatacca caatgaggtg agggaagcaa ataagtatga 4140 gctagttgac agaattctag aaaaaaacat tggattagtc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 attaatgcca cattccttga atgcgcagaa actcttcgaa gaggcaaacg agcgcgcgta 4320 cgggaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tgttatatgc 4380 ggtcacacga ggagcttatg taagagtcaa aggaacaact gtgcgttgtg ccgacgccgt 4440 agtgtatggc ttttatggta gaacacgagc aatggtaaca agttgggcta gtgaagcctg 4500 gggggccata tttacgtcgt gtctgagagc attagttgtt atggtggtca cggcatatat 4560 ttctacttgg attcccaaaa ttaggaagat gattaaacgt gagaagaaac agtatgagga 4620 tcttggagat ggagagttat atgtggagca gcacggcaaa agagaggaag catttttgtt 4680 caagatttgc gccatctttg cacttatagc aggcatagtt gactacgaat ggggagcagc 4740 tgcatgcgca acaatgaaca aagtcaagag tatatgcact gttcttgggt ctgttgggat 4800 tgaaagccac gccaatgagc ctgatgataa agttgagcag gacttgaagg aatcccttaa 4860 atttgcatct ttcgagattg aagtaccaaa cgtagttttg tcacaggatg acatgacttt 4920 tgaaagatgg ttccaacatc aaatccaata cggcaatgtt tgtgcggatc ctatctacag 4980 tggtccgcta cgcatgctag caattacaga gaattctgcg agagagttag caatgaacat 5040 tcgcacatca ggggaaaccg acctgcgtgt ttatagtgga gttggtggag aaaaatcgac 5100 agggttacct aaggaactca gcatgtttgg gcatgtgtta gtttgtgttc ccacgagagt 5160 tttagcggaa agcttattaa catcattcat ggtacttttc aatatggatg ttaatgtggc 5220 ttatcgaggg agaatacata ctggtaatgc accaattaca ataatgactt atggttatgc 5280 cttcaacttc ttggtgcaca agccaatgga gctaaaccga tacgattatg tgttactaga 5340 tgaaattcac accaatcctg ttgagttcgc acctttgttt tcttttatca aaactacaga 5400 tccaaagaag aagattgtta agttgtcagc tacccatgct gggatggact gcgagtgtga 5460 aaccaggcac aagcttaagg tagaaacctt gagtgaaatg ccaattgaaa gctgggtttc 5520 tatgcaaggc tctggtgttg ttggtgatgc gacgtctgtt ggagatgtaa ttttggtctt 5580 tgttgcatct ttcaaggatg tcgacacatg tgctaacgga ttgcgatcta aaggctttaa 5640 agttttgaaa gttgatagca gaaacttcag acgtgatgca gatgtggata aacaaatcca 5700 gtcactaggt gaagggaaga aattcatagt tgctacaaat ataattgaaa atggggtgac 5760 gttcaacatt gatgttgttg tcgattttgg cgagaaaatc agccccaatc tctcaagcga 5820 tgagcggtgt attacactag gaaggcagag aatatcgcga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aacaacagtg ggcagccttc aacggttgtt 6000 gataacacgt tgatcctaat gattgctatg gaatatgcga tagctaaggt ctttgtcaca 6060 cgccctaaca tcaagtacgt ctgtaatggg gacgaccttc tgattaattg tccaaggggc 6120 atcgcaagcg ccattagtga gcacttcaag gatgcatttg cagacttaag cttgaactac 6180 gactttgatc atgtttgtga caaaatcaca gacgttgatt ttatgagtca tagtttcatg 6240 tggctggatg ccgagcagat gtatatacca aagctggata aggagcgaat tgtggcaatt 6300 ttggagtggg aaaggagtga tgagcaattc agaacgagga gcgccttgaa cgctgcttat 6360 attgagagtt ttggatatga agacttaatg gctgagattg agaaattcgc tcatttttgg 6420 gctgaaaagc atggtctcaa tgacgtcttg atggagcgag agaaagttag agacttgtac 6480 gttagtgagg attttgatgc gtcagctttt gagaagtttt atccggaaac attttcgcca 6540 tttgatgttt atgttgaacc acatgcatcg acatccaaga caatcgagga gctacagaaa 6600 gaaatggagg atctggatgc agatacaaca attactgtgg ttcaaaggga gacacagaag 6660 gcgagaataa gagaacaaat tgagacactt agggcacaac aaattgtgag accttctgag 6720 gcccagctac agcctgacgt aactcctacg caaattgtta cgtttgaacc accaagagtc 6780 acaggatttg gcgctttatg gattccgcgc caacaaagga actacatgac gacagcttat 6840 attgagaaga taaaggctta tgttccacac tcaaacttga ttgaatcagg actagctagt 6900 gaagctcaat tgactagttg gatcgaaagc acgtgcagag actatcaagt tagtatggac 6960 gtcttcatga ctacagtact gccagcatgg attgttaatt gcataattaa tggaacgtct 7020 caggagcgca ctaatgagca cacatggaga gctgtggtta tggcaaatat ggaagatcag 7080 gaggtgcttt attaccctat caagcccata attgtaaacg ctcaaccaac tttgaggcaa 7140 gtgatgcgtc attttggcga gcaagccgtt gctcaataca tgaacagtct ccaagttgga 7200 aaacctttca cagtgaaagg cgccgtgact gctggttacg ctaatgttca agatgcttgg 7260 ttgggtattg actttctccg agacacgatg ccgttgacaa caaaacagat ggaagtcaag 7320 caccaaatta tcgcagcgaa cgttacaagg cggaaaattc gtgtttttgc tcttgcagca 7380 ccgggagatg gcgatgaatt agatacagaa aggcatgttg tcgacgatgt tgctagaggt 7440 cgtcacagtc tgagaggagc tcaactcgac taaacgagca cgttatcttt tattttaatt 7500 gcgtgttttt cttatttcaa ctatgtttta tgctttgtgt ttgtttgttg tggcacctga 7560 accaggtaca gctggcaggt gtttcggcat ggtgtggttg gacaattggt ttgcaccggt 7620 agtctgagaa gcgctatgta tcacgtggtt ggttaattca tattttgtat gggttaatca 7680 agaagcgtct atcgcccaaa agggcaccag aaaatggttg cgtcattcgt ggcgtaatca 7740 gtttttggag tttggctagg taacttgtcg cctttccaaa agcc 7784 //