ID FJ999761; SV 1; linear; genomic RNA; STD; VRL; 7784 BP. XX AC FJ999761; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate MBL86 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7784 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7784 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; 2127823d4c86f32d93bc28c21f43ccda. XX FH Key Location/Qualifiers FH FT source 1..7784 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea acuminata" FT /isolate="MBL86" FT /mol_type="genomic RNA" FT /country="Uganda:Mbale" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B6" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0B6" FT /protein_id="ACS29479.1" FT /translation="MGKSKLTYKQCIAKWGKAALEVQNNGSKRSVPVGTHQIAANIFAF FT YDAKDYHLFAMGKRGGLTPAAEQLRVAIERGTIYKVQYDCHFCPDCDAIVDSDEGWYCE FT DCGSQFNKRDDNVLGNKNDTARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI FT KALYETPGKRLTAYYEERLEELAYKLDVAKMNEEKQETVLEETVFSISNDEFPALEGPQ FT TEVVSGTIEEHTEENYIEVPSEFEQPVEFEFTNGTTNEPVSEAADVHVVATPVVALGAT FT SSETATDKEKLAEKPKRVMWITKPKTSAAAPVMLSKSAVWVAKPRLASALSVVEPVAKP FT TAEASSGAINIGAMVCPITIAAIESHSHQNEKLNESLSAQVNGATKEEEPVIKYNITFG FT SFNYEVSAKGEQVQAAVKLDEMIEGSDTEPILICQTGSSHKHETKKAAKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDIFEC FT PYCHVSSNELEGLNGDNCEKCKDLFYKHIDPPRKVEEEYLMVPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVSIAKIFDGKLIASKKKFKTKQAPNVANIPLDDFMQELVEICLEK FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFYHKNKLCLCGGYDREKKI FT RSSEVRPGWSGVILHKNQVAECDWSKFVFIDDICVVQGRNLITNKIENALEKKGSNRLK FT QIQFYANSIIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSKRIDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYRIATIISDDDVLRT FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQSDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAIDEIQLLNATDQVANARELYLDTRATSAGDFGILRKYQSIHEFFPNIMSR FT ANKAGVAVIKSETSLSKAFALMNSAKSMDAIHTLIGEDVIENVNGACLLKNDKTFFSIG FT CKQGVDGSKMYVPLCPTKQHVRIHRVESNMQIPMPTFHDATVWEFNEGYCYANQFAIMV FT GFVNEDEMEFYKNQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKRVEGEMLTYKVGGIYDWVTKKNAFID FT LFEHHPENIFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIQGLRDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGIIAKEISSRKLITMYHQDLFSGHEWQRLKLMPHSLNAQKLFDEANERAYGKQSWNLR FT VVWGACKEVLYAVTRGAYVRVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEELGGGELYVEQHGKREESFLFKICAVF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGSVGIESHANEPDDKVEQDLKESLKFASFE FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRASG FT ETDLRVYSGVGGGKSTRLPKELSMFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDHECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSVGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLSSDERCVTLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0B7" FT /protein_id="ACS29480.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRSIASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAEKHGLNDVLME FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVTPTQIVTFEPPRVTGFGALWIPR FT QQRNYMTTAYIEKIKAYVPHSNLIESGLASEAQLTSWIESNYGDYQVSMDVFMTTVLPA FT WIVNCIVNGTSQERTNEHTWRAVVMANMEDQEVLYYPIKPIIVNAQPNLRQVMRHFGEQ FT AVAQSRNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMPLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" FT 3'UTR 7474..7784 XX SQ Sequence 7784 BP; 2355 A; 1388 C; 1900 G; 2041 T; 100 other; taaataaaaa tgatatagag aaaatttgaa agaaaagtgt gaacttagca aacttattcg 60 caattcagct ttactttaaa tactttattt taattttatc gaactgtggt gtccgctttg 120 aaacggatca gacgcagaaa tggggaaatc caaactcact tacaaacaat gcattgccaa 180 gtgggggaaa gccgcccttg aggtacagaa caacggatcg aagaggagtg tccctgttgg 240 aactcatcaa atcgcggcga acatctttgc gttctatgac gcaaaagact accatctttt 300 tgccatgggc aaaagaggtg gactgactcc ggcagctgag caattgagag ttgcaattga 360 gcgaggaaca atttataagg tgcagtacga ctgccacttc tgtcccgatt gcgatgcaat 420 tgtcgactct gacgagggat ggtattgcga ggattgcggt tcgcaattca ataagcgcga 480 tgataacgta cttggtaaca aaaacgatac cgcacgcgct cttggtgggt ggactgaata 540 tgaagacgcc acttgggcgt catttgaggc tgctaaggct gatatgctcg aagtagcacc 600 aactgtgggt caacttgaga aagagatcaa agccctatat gagacacctg gtaaaagact 660 cactgcttat tacgaagaaa ggctcgaaga gttggcctat aaacttgatg tggccaagat 720 gaatgaggag aagcaggaga cagttctcga ggaaactgtt ttctcaattt ccaatgacga 780 atttccggct ctcgaggggc cacaaactga agtagtcagt ggaactattg aggaacatac 840 tgaggaaaac tacattgagg tcccgagtga atttgaacag cctgtggagt ttgaatttac 900 aaatgggact actaatgaac cagttagtga agctgctgat gtgcatgtag tcgcgacacc 960 tgttgtggct ctaggtgcaa caagctccga gacggcaact gacaaggaaa agttggctga 1020 aaaaccaaag agagttatgt ggattacaaa gccaaaaact tctgctgcag ctcctgtcat 1080 gctttctaag tcggctgtct gggttgctaa gcctaggcta gcatctgcac tttctgtagt 1140 tgaaccagtt gctaaaccaa cagcggaagc tagcagtggc gcgatcaaca taggcgctat 1200 ggtgtgtcct atcacgattg cagcaattga atcacacagc catcaaaatg aaaagctcaa 1260 tgagtctctg agcgcacaag ttaatggcgc gacgaaggaa gaggaaccag tgattaaata 1320 caatataact tttggttcat tcaattatga agtaagcgca aaaggggaac aagtgcaagc 1380 tgctgtcaaa cttgacgaga tgatagaagg atctgacact gaacccattc tgatttgcca 1440 aacaggaagt tctcataaac atgaaaccaa gaaagctgcg aaggggcttt tcgttcagga 1500 tagattttca gtgattggga ataaggtact atgcaagtca tttcctgcct tcaagaattt 1560 catgaatgag acaaggttgg gagggattta tagaacaaga aaaggaaatt acaaaaacgc 1620 tgcattacgc ttattgaagg ctaccaaagt tcaagtattt tatgatggca ttaaggacat 1680 ttttgaatgt ccgtattgcc acgtgagcag taatgagcta gagggcctta atggtgataa 1740 ctgcgaaaaa tgcaaggatc tgttttataa acacattgat cccccaagga aagttgagga 1800 agaatatctt atggttcctc tcgtgcctat cgatcagcat gttcatgaag aacatagcat 1860 catcagtaag gctaaatggg aagcgcatga gtctatatgc gaaggagaag tgagtattgc 1920 taagattttt gatggcaaac taattgcgag caagaagaag ttcaaaacta agcaagctcc 1980 aaatgttgca aatataccac ttgacgactt tatgcaagaa ctagttgaaa tttgtcttga 2040 gaaaaacacc cctattgaga tcattggggg tgtgaaatct tttaatgtgg tcaagttgag 2100 gcatactacg agagatatca gcaaatctgg tgaggatgat atgtatccaa ctgaaaggga 2160 gtggttctac cacaagaata aactatgttt gtgtggtgga tatgatcgag agaagaaaat 2220 cagaagttca gaggtgcgcc caggttggag tggagtaatc ttacataaaa atcaagtggc 2280 ggaatgtgat tggagcaagt ttgttttcat tgatgacata tgcgtagtgc aagggagaaa 2340 cttgatcacg aataaaattg agaatgcact tgaaaagaaa gggtctaata gacttaaaca 2400 gatacaattc tatgcaaatt ctattatacc caacttcaag gatgaatttg acagagctag 2460 ccgtctgaaa gctgatcatg aaccagatga gtcgtccaac aacgaactca ttggtaggct 2520 agctaaactt gttgcagcag tcattccaaa aggtcaccta tattgcaaaa catgctgttt 2580 tagggtgatc aagagcaagc gcatagatat agtcaacgcg ctgaataagg ctaagcagcg 2640 tggtgaacgg gatgagttta tttatgatga gctcatcaaa ctctttgagc tccaagcacc 2700 accaccttat aggattgcaa cgattatcag cgatgacgat gtgttgcgaa cattaggact 2760 gggtggagac ctatatagtg ggcgattgag tctcataatg cagcacttgc aagggttgca 2820 cacgtctata tcaatgcttc accaatcgct tgcaggggct cagagcgacc aacaaattga 2880 caggcaagcg ctccacaacc aagtgcggat tttacaccag agaaatgaag agcatatgcc 2940 ttttctgaag aaggcaattg atgaaattca gctgttaaat gcgacagatc aagttgccaa 3000 tgctcgggaa ttgtacttgg atactagggc aactagtgct ggggattttg gcattttacg 3060 gaaatatcag agcatccatg agttctttcc caatatcatg agccgggcca ataaagcagg 3120 tgtggcagtt atcaaatctg aaacatcatt gagcaaagcc tttgccctta tgaacagtgc 3180 taagtcaatg gacgctatcc atacgctcat aggggaagac gtcatagaaa acgttaatgg 3240 ggcttgctta ctaaagaatg acaaaacatt tttctcaatt ggttgcaagc aaggtgttga 3300 tggcagcaaa atgtatgtcc cgctttgtcc gaccaaacaa catgtaagaa ttcaccgagt 3360 tgaatctaac atgcaaattc ctatgccaac atttcacgat gcaactgtct gggagtttaa 3420 cgaaggttat tgctatgcta atcaatttgc tataatggtt ggttttgtca atgaagacga 3480 aatggagttc tataaaaacc aaatgaacca agttgtgttg aacttagggg cttggccgac 3540 ttttgagcaa tatttaattg agctacgagc aatttcactt gattacccaa aagttagggg 3600 gtgcccagct gctattcatt tagtttctca tgcaaacaag cttattcatg ttttggggca 3660 atttggaaca ataaatcaag gttggcatgc gcttgaagta gcaactgtag gcgaacttgt 3720 ggacttgtgc cataagagag ttgaaggtga gatgttgact tacaaagttg gtggcattta 3780 tgactgggtg actaaaaaga acgctttcat cgacctattt gaacaccatc cagaaaacat 3840 attcaaaatt tgtacatcac catcagtgtt gtggttattt gctcgcagct gcgaaaagca 3900 tgatttcatt aactacatca tggctaggga ccattcattg gtgggtttgt tcattaaatt 3960 ggaatatgtt ggcaagcatc ttcatatttt ccaaagtgtt gatgatgttt gtgttgaata 4020 cgcggcgtct atgagagaaa tcattgaaga gcacgctgat attcaagggc tgcgggactc 4080 agtggtggat agaatggttc atgcatatca caatgaagtg agggaagcaa ataagtatga 4140 gctagtcgat agaattcttg aaaaaaacat tggaataatc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctctggg cacgaatggc agcgtttgaa 4260 gttaatgcca cactccttga atgcgcagaa acttttcgac gaggcaaacg agcgcgcata 4320 cggaaaacaa tcatggaatt tacgcgtggt ttggggtgcg tgcaaggaag tgttatatgc 4380 agtcacacgc ggagcttatg taagagtcaa aggaacaact gtgcgctgtg ccgacgccgt 4440 agtgtatggc ttctatggta gaacacgagc gatggtaaca agctgggcta gtgaagcatg 4500 gggagctata tttacgtcgt gtctaagagc attagttgtt atggttgtca cggcatacat 4560 ttcaacttgg attccaaaaa ttaggaagat gattaagcgc gagaagaaac aatttgaaga 4620 gcttggaggt ggagagttgt atgtggaaca acatggcaaa agagaggaat cgtttttatt 4680 caagatttgc gccgtctttg cacttatagc aggcatagtt gactacgaat ggggagcagc 4740 tgcatgcgct acaatgaaca aagttaagag tatatgcact gtccttgggt ctgtcgggat 4800 tgagagtcac gctaatgagc ctgacgacaa agttgagcag gacttgaagg agtcccttaa 4860 atttgcatct tttgaaattg aagtgccaaa cgtagttcta tcgcaagatg atatgacctt 4920 tgaaaggtgg ttccaacatc agatccaata tggcaacgtg tgtgcggatc ccatctatag 4980 tggtccacta cgcatgctag caattacaga aaattctgcg agagaactgg caatgaacat 5040 tcgagcatca ggggaaactg acttgcgtgt ttatagtggc gttggtggag gaaaatcaac 5100 aaggttgccc aaggaactca gcatgtttgg gcatgtgcta atctgcgttc caacgagagt 5160 tctggcggaa agcttattaa catcattcat ggtactattt aacatggatg ttaatgtggc 5220 ttatcgagga aggatacaca ctggtaacgc accgatcaca ataatgactt atggttatgc 5280 gttcaacttt ttggtgcata aaccaatgga attgaatcga tatgattatg tgttgctaga 5340 tgaaatccac actaatcctg ttgaatttgc acctctgttt tcttttatca aaactacaga 5400 tccaaagaag aagattgtca aactgtcagc aacccacgct ggaatggacc acgagtgtga 5460 aaccaggcac aagattaagg tggaaacttt gagcgaaatg ccaattgaaa gctgggtttc 5520 catgcaaggt tctggagttg ttggcgacgc gacatctgtt ggggacgtga ttttagtctt 5580 tgttgcatct ttcaaggatg tcgatacatg tgctaatgga ttgcgatcta aaggcttcaa 5640 agttttgaaa gttgatagta gaaactttag acgtgacgca gatgtggata aacaaatcca 5700 atcactgggt gaagggaaga aattcatagt cgccacaaat ataattgaaa atggggtgac 5760 atttaacatt gatgttgttg ttgactttgg cgagaaaatc agccccaatc tctcgagcga 5820 tgagcggtgc gtcacattag ggaggcagag aatatcgaga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aataacagtg ggcagccttc aacagttgtt 6000 gataacacgt tgatcctaat gattgctatg gaatatgcga tagctaaggt ctttgtcaca 6060 cgccctgaca tcaagtacgt ctgtaatggg gacgaccttc taattaattg tccaaggagc 6120 atcgcaagcg ccattagtga gcacttcaag gatgcatttg cagatttaag cttgaactac 6180 gactttgatc atgtttgtga caaaatcaca gacgttgatt ttatgagtca tagtttcatg 6240 tggctggatg ctgagcagat gtatatacca aagctagata aggagcgaat tgtggcaatt 6300 ttggagtggg aaaggagtga tgaacaattc agaacaagga gcgccttgaa cgccgcttat 6360 attgagagtt ttggatatga agacttaatg gctgagattg agaaattcgc tcacttttgg 6420 gctgaaaagc atggtctcaa tgacgtcttg atggagcgag agaaagttag agacttgtac 6480 gttaatgagg attttgatgc gtcggctttt gagaagttct atccggaaac gttttcgcca 6540 tttgatgttt atgttgaacc acatgcatcg acatccaaaa caatcgagga gctacagaaa 6600 gaaatggagg atttggatgc agatacaaca attactgtgg ttcaaaggga gacacagaag 6660 gcgagaataa gagaacaaat tgagacactt agggcacaac aaattgtgag accttctgag 6720 gcacagctac agcctgacgt aactcccacg caaattgtta cgtttgaacc gccgagagtc 6780 actggatttg gcgctttatg gattccgcgc caacaaagga actacatgac gacagcttat 6840 attgagaaaa taaaggctta tgttccgcac tcaaacttga ttgaatcagg attagctagt 6900 gaagctcaat tgactagttg gattgaaagc aattacgggg actatcaagt tagtatggac 6960 gtcttcatga ctacagtact gccagcgtgg atcgtcaatt gcatagtcaa tggaacgtct 7020 caggagcgca caaatgagca cacatggaga gctgtggtta tggcaaatat ggaagatcag 7080 gaggtgcttt attaccctat caagcccata attgtaaacg ctcaaccaaa tttgaggcaa 7140 gtgatgcgtc attttggcga gcaagccgtt gctcaatcca gaaacagtct ccaagtggga 7200 aaacctttca cagtgaaggg cgccgtaact gctggttacg ctaatgttca agatgcttgg 7260 ttgggtattg actttcttcg cgacacgatg ccgttgacaa caaaacagat ggaagtcaag 7320 caccaaatta tcgcagcgaa cgttacaagg cggaaaattc gtgtttttgc tcttgcagca 7380 ccgggagatg gcgatgaatt agatacagaa aggcatgttg tcgacgatgt tgctagaggt 7440 cgtcacagtc tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcaact 7500 gcgtgttttt tttatttcat ttacgtttca tgcttcttgt ttgtttgttg tggcacttga 7560 accaggtaca gctggcaggt gtttcggcat ggtgtggttg gacaattggt tcgcaccggt 7620 agtctaagaa gcgctgtgta tcacgtggtt ggttagttca tatttcgtat gggttaatca 7680 agaagcgtct attgctcaaa agggcaccag aaaatggttg cgtcattcgt ggcgtgatca 7740 gtttttggag tttggctagg taacttgtcg cctattcaaa agcc 7784 //