ID FJ999759; SV 1; linear; genomic RNA; STD; VRL; 7780 BP. XX AC FJ999759; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate BUSH1 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7780 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7780 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; 8fe22c8a9fafb6f5565638f5d92ccfc2. XX FH Key Location/Qualifiers FH FT source 1..7780 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea batatas" FT /isolate="BUSH1" FT /mol_type="genomic RNA" FT /country="Uganda:Bushenyi" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B2" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0B2" FT /protein_id="ACS29475.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRNVSVGTHQIAANIFAF FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYDCHFCPDCDAVVDSEEGWYCE FT DCGSQFNKRDDNVLDNKNDAARALGGWTEYEDATWASFEVAKGDMFEVAPTVGQLEKEI FT RAIEKAAGKRLTAYEEEMLEELTYKLDVAKMNEEKLEKVLEEPVFSTFSDEFPALEGLK FT DEAVNETIEEHTEENAIEVVIDVEKPVESETANLKTAEPISNVADVHVAVAPIMAPSVT FT NSGTAIIKEKLVEKPNTAMWVTKSKTPAAVPAAPSKSVVWVAKPRSTSALFIGEPVAKS FT TVRACSDVINVGAMMCPITVSAVESHSHQNEKPNESPNAQANDATKEEEPVVKYNITFG FT SFNYEVSAKGEQVQAAVKLDEMIEGPDTEPILICQTGSSHKSETKKAAKGLFVQDRFSV FT VGNKVLCKSFPAYKNFINETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDVFEC FT PYCHMSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMVPLVPIDQHVHEEHSIIS FT KAKWEAHESICEGEVNIVKIFDGKPTASKKKFKTKQAPNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFYHKNKLCLCGRIDRERKV FT RSYEVRPGWSGVILHRNQVAECDWSKFVFIDDLCVVQGRNLITNKVENALEKKGANRLK FT QIQFYASSIIPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKTC FT CFRVIKSKRIDIVNALNKVKQRGERDDFIYDELIKLFELQAPPPYEIATIISDNDMLRT FT LGLGGDLYSGRLSLIMQHLQGLHTSISMLHQSLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAVDEIQLLNSTDQVANARELYLDTRATSTGDFDILRKYQSIHEFFPNIMSR FT ANKAGMAVIKSETSLSKAFALMNSAKSMDVVHALIGEDVIEHVNGACLLKNDKTFFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFINEDEMEFYKNQMNQIVLNLGPWPTFEQYLIELRAVSLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFEHHPENVFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYVGKHLHIF FT QSVDDVCVEYAASMREIIEEHADIHGLQDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLTAKEISSRKLITMYHQDLFSWHEWQRLKLMPHSLNAQKLFEEANERAYGKQSWNLR FT VIWGACKEVLYAATRGVFVKVKGTTVRCADAVVYGFYGRTRAMVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEDLGGGELYVEQHGKREEAFLFKICAIF FT ALIAGIVDYEWGAAACATMNKVKSICTVLGTVGIESHANESDDKVEQDLKESLKFTSFE FT IEVPNVILSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLAITENSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSVFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPVELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDCERETRHKIKVETLSEMPIESWVSMQGSGVVGDATSAGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLASDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B3" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0B3" FT /protein_id="ACS29476.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRGVASAISEHFKDAFADLSLNYDFDHICDKITDVDFMSHSFMWLDVEQMYIPKLD FT KERIVAILEWERSDEQFRTRSALNAAYIESFGYEDLMAEIEKFAHFWAKKHGLNEVLME FT REKVRALYVNEDFDASAFEKFYPEIFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVNPTQIVTFEPPRVTGFGALWIPR FT QQRNYMTPAYIEKIKAYVPHSNLIESGLASEVQLTSWFENTSRDYQVSMDVFMSAILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN FT VTRRRIRVFALAAPGDSDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" FT 3'UTR 7474..7780 XX SQ Sequence 7780 BP; 2380 A; 1395 C; 1881 G; 2024 T; 100 other; aaaataaaaa tgacatagag aaaatttgaa agataagcgt gaactcagca aacctattcg 60 caactcagct ttactttaaa tactttattt taattttatc gaactgtgga gtccgcttag 120 aaacggatca gacgtggaaa tggggaaatc caaacttact tataagcaat gcattgctaa 180 gtggggaaaa gccgcacttg aggcgcaaaa caatggatct aaaaggaatg tttctgttgg 240 aactcatcaa attgcggcaa atatctttgc gttctatgat gcaaaggact accacctatt 300 tgccatgggc aagagaggtg gactgactcc agcagctgag caactgagaa tcgcaattga 360 acgaggaaca atttataagg tgcagtacga ctgccacttt tgtcccgatt gcgatgcagt 420 tgttgattct gaagagggat ggtactgtga agattgcggc tcacaattca ataagcgcga 480 cgacaacgtg cttgataaca agaacgacgc cgcacgcgct cttggtgggt ggactgaata 540 cgaagacgcc acctgggcgt cgttcgaggt tgctaagggt gacatgtttg aagtagcacc 600 aactgtgggt caactcgaaa aagagatccg agccatagaa aaagcagctg gcaaaagact 660 taccgcttat gaagaagaaa tgcttgaaga gttgacctat aagcttgatg tggccaaaat 720 gaacgaggaa aaactggaaa aagttctcga ggaacctgtt ttctcaactt tcagcgacga 780 atttccggct ctcgaggggc taaaagatga agcagttaat gaaaccattg aggaacatac 840 tgaggaaaat gcgattgaag tcgtaattga tgttgaaaag cctgtggaat ctgaaactgc 900 aaatttgaaa actgctgaac caattagcaa cgttgctgac gtgcatgtag ctgtggcacc 960 tatcatggct ccaagtgtga ccaactcagg aacggcaatc atcaaggaga agttagttga 1020 aaaaccaaat acagctatgt gggtcacaaa gtcaaaaaca cctgctgcag ttcctgctgc 1080 accatctaag tcagttgtct gggttgctaa gcctaggtca acatccgcac ttttcatcgg 1140 tgaaccggtt gccaaatcga ctgtgagagc ttgcagtgat gtgattaatg taggcgctat 1200 gatgtgtcct atcacggtat cagcagttga atcacacagt catcaaaatg aaaagcctaa 1260 tgagtctcca aacgcacaag ctaacgatgc aacgaaggaa gaagagccag tggttaaata 1320 caatataact tttggttcat ttaattatga agtaagtgct aaaggagaac aagttcaagc 1380 tgccgttaaa cttgacgaga tgatagaagg acctgacact gaaccaattc tgatttgcca 1440 aacaggaagt tcccataaat ctgaaaccaa gaaggcggca aaagggcttt ttgttcagga 1500 tagattttca gtggttggta ataaggttct gtgcaagtcg tttcctgctt acaagaattt 1560 cattaatgaa acaaggttgg gaggaattta cagaacaaga aaaggaaatt ataagaacgc 1620 tgcattgcgt ttattgaagg ctaccaaagt tcaagtgttt tatgatggga taaaggatgt 1680 tttcgaatgt ccgtattgcc acatgagcag taatgaatta gagggcctta atggagacaa 1740 ttgtgaaaag tgcaaggatc tattttacaa acacattgat gatccaagga aggttgagga 1800 ggaatatctt atggttcctc tcgtgcccat tgatcagcat gttcatgaag aacatagcat 1860 cattagcaag gctaaatggg aagcgcatga atccatctgc gaaggagaag tgaacattgt 1920 taaaattttt gatggaaagc caactgcaag caagaagaaa ttcaaaacta agcaagctcc 1980 aaatgttgca aacataccac ttgatgactt tatgcaggag ttagtagaaa tctgtctcga 2040 aaggaacacc cctattgaaa tcattggagg tgtgaaatct tttaatgtgg ttaagttgag 2100 gcatactacg agagacatta gcaagtctgg tgaggatgat atgtatccaa ctgaaaggga 2160 atggttttat cacaagaata agctatgttt gtgtggcaga atcgatcgtg agaggaaagt 2220 cagaagctat gaagtgcgcc caggttggag tggagtaatc ttgcacagga atcaagtggc 2280 ggaatgtgat tggagcaagt ttgttttcat tgatgattta tgcgtggtgc aaggcagaaa 2340 cttgattacg aataaggttg agaacgcact tgaaaagaaa ggggctaata gacttaaaca 2400 gatacaattc tatgcaagtt ctattatacc taatttcaag gatgaatttg acagagccag 2460 ccgactgaaa gctgatcacg aaccggatga gtcatctaac aatgaactca ttggcaggct 2520 ggccaagctt gttgcagcag tcattccgaa aggccattta tactgcaaaa cgtgctgttt 2580 tagggtcatc aagagcaagc gcatagacat agtcaacgca ttgaataagg ttaagcagcg 2640 tggtgaacgg gatgatttta tttatgatga gctcatcaag cttttcgagt tacaggcacc 2700 accaccatat gagatagcaa cgataatcag tgataacgat atgttgcgca cattaggatt 2760 gggtggagac ctatacagtg gacgactgag tctcataatg caacatttgc agggattgca 2820 cacatcaata tcaatgcttc accagtcact tgcaggggcc caaaatgacc aacaaattga 2880 caggcaagcg ctccacaacc aagtgcgaat tttgcatcag agaaatgagg agcatatgcc 2940 tttcctaaag aaggcagttg atgaaattca gcttttgaat tcaacagacc aggtcgccaa 3000 tgctcgggaa ttgtatttgg atactagggc aactagcact ggagattttg atatattacg 3060 aaaatatcag agcatacatg agttctttcc caatattatg agccgagcca acaaagcggg 3120 gatggcagtt atcaaatctg aaacatcatt gagcaaagct tttgctctta tgaacagtgc 3180 taaatcgatg gacgttgttc atgcgctcat aggggaagac gtcatagaac atgttaatgg 3240 agcttgcttg ctaaagaacg acaagacatt tttctcaatt ggttgcaagc aaggtgttga 3300 tggtagcaag atgtatggtc cgctttgtcc gaccaaacag catgtaagaa ttcaccgagt 3360 tgagtctaac atgcaaattc ctttgccaac attccacgat gcaactgtat gggagtttaa 3420 cgaaggttat tgctacgcca accaatttgc tataatggtt ggtttcatca atgaggatga 3480 aatggagttt tataagaatc aaatgaacca aattgtgttg aatttagggc cttggccgac 3540 ttttgagcaa tatttaattg agctccgagc agtttcactt gattacccaa aagttagagg 3600 gtgtcctgct gctattcatt tagtttccca tgcaaacaag cttattcatg tcttgggaca 3660 atttggaaca ataaaccaag gttggcacgc acttgaagta gcaactgtag gtgaacttgt 3720 tgatttgtgc cataagaaag ttgaaggtga gatgctaaca tataaagttg gtggcattta 3780 tgactgggtg actaagaaga atgctttcat cgatttattt gagcaccacc cagaaaatgt 3840 attcaaaatt tgcacatcgc catcagtgtt gtggttgttt gctcgcagct gcgaaaaaca 3900 tgattttatc aactacatca tggccaggga ccactcattg gtaggtttgt tcatcaaact 3960 agagtatgtt ggcaagcatc ttcatatttt tcaaagtgtc gatgatgttt gtgttgagta 4020 cgcagcgtct atgagggaaa tcatcgagga gcacgctgat attcatgggc tgcaggattc 4080 agtggtagat agaatggttc atgcatatca taatgaagtg agggaagcaa acaagtatga 4140 gttagttgac agaattcttg aaaaaaacat tggattaacc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgaa 4260 attaatgcca cattccttga atgcgcagaa actcttcgaa gaggcaaacg agcgcgcgta 4320 cgggaaacaa tcatggaatt tacgcgtgat atggggtgcg tgcaaggaag tgttatatgc 4380 agccacacgc ggagtttttg taaaagtcaa aggaacaact gtgcgttgtg ccgacgccgt 4440 agtatatggc ttctatggta ggacacgagc aatggtaaca agctgggcta gtgaggcttg 4500 gggagctata tttacatcgt gtctgagagc attagttgtt atggtggtca cggcatacat 4560 ctcaacctgg attcctaaga ttaggaagat gatcaaacgc gagaagaaac agtttgaaga 4620 tcttggaggt ggagagttgt atgtggagca gcatggcaaa agagaggagg catttttatt 4680 taagatttgc gccatctttg cacttatagc aggcatagtt gactacgagt ggggagcagc 4740 tgcatgcgca acaatgaaca aagtcaagag catatgcact gtccttggga ctgttgggat 4800 tgagagccac gctaacgagt ctgatgacaa agtcgagcaa gacttgaagg agtcccttaa 4860 atttacatct tttgagattg aagtgccaaa cgtgattcta tcacaggatg atatgacttt 4920 tgaaaggtgg tttcaacatc aaattcaata tggcaacgtg tgtgctgacc ccatctatag 4980 tggtccgcta cgcatgttag caatcacaga aaactctgcg agagagctag caatgaacat 5040 tcgcacatca ggggaaaccg acttgcgtgt ctatagtggt gttggtggag gaaaatcaac 5100 aaggttaccc aaggaactta gcgtgtttgg gcacgtgcta atttgtgttc ccacgagagt 5160 tttggcggaa agcttattaa cgtcattcat ggtacttttc aatatggatg ttaatgtggc 5220 ttatcgagga aggatacata ctggcaacgc accaatcaca ataatgactt atggttacgc 5280 attcaacttc ttggtgcaca aaccagtgga actaaaccga tatgattatg tgttgctaga 5340 tgaaattcac accaatcctg ttgaatttgc acctctgttt tcttttatca aaaccacaga 5400 tccaaagaag aaaattgtta agttatcagc aacccatgcc gggatggact gtgagcgcga 5460 aaccaggcac aagattaaag tagaaacctt gagtgaaatg ccaattgaaa gctgggtttc 5520 tatgcaaggc tctggagttg ttggtgatgc gacatctgct ggggacgtaa ttctggtctt 5580 tgttgcatct tttaaggatg tcgatacatg tgctaatgga ttgcgatcta aaggcttcaa 5640 agttctaaag gttgatagta gaaacttcag gcgtgacgca gacgtggata aacaaatcca 5700 atcactgggt gaagggaaga aattcatagt cgccacaaac ataattgaaa atggagtgac 5760 attcaacatt gatgttgtcg ttgattttgg cgagaaaatc agccccaatc ttgcgagcga 5820 tgagcggtgt atcacattag gaaggcagag aatatcgcga gcagaaannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aataatagtg gtcagccttc aacagttgtt 6000 gataatacgt tgatcctgat gattgctatg gaatacgcga tagctaaggt ttttgtcaca 6060 cgccctgaca tcaagtacgt ctgtaatggg gacgaccttc tcattaattg tccaaggggc 6120 gtcgcaagcg ccattagtga gcacttcaaa gacgcattcg cagacttaag cttgaactat 6180 gactttgatc atatttgtga caaaattaca gacgttgatt ttatgagtca tagtttcatg 6240 tggctggatg ttgagcagat gtacatacca aagctggaca aggagcgaat cgtggcaatt 6300 ctggagtggg aaaggagtga tgagcaattc agaacgagga gcgccttgaa cgctgcttat 6360 attgagagct ttggctatga agacttaatg gctgagattg agaaattcgc tcacttttgg 6420 gctaaaaagc acggtcttaa tgaagtcttg atggagcgag aaaaggttag agccttgtac 6480 gttaatgaag attttgatgc gtcagctttt gagaagttct atccggaaat attttcgcca 6540 tttgatgttt atgttgaacc acatgcatca acatctaaga caattgagga gctacagaaa 6600 gaaatggagg atttggatgc agacacaaca attactgtgg ttcaaaggga aacacaaaag 6660 gcgagaataa gagaacaaat tgaaacactt agggcgcaac aaatcgtgag gccttctgag 6720 gcacagctac agcctgacgt aaatcccacg caaattgtca cgttcgaacc accaagagtc 6780 actgggtttg gcgccttatg gattccgcgt caacaaagga actacatgac gccagcttat 6840 atcgagaaga taaaggctta tgttccgcat tcaaacttga ttgaatctgg actagctagt 6900 gaagttcaat tgaccagttg gttcgagaat acgagcaggg attaccaagt tagtatggat 6960 gtcttcatga gtgcaatact gcccgcatgg attgtcaact gcataatcaa tggaacgtct 7020 caggagcgca ccaatgagca cacatggaga gctgtgatca tggcgaatat ggaggatcag 7080 gaagtgctct attaccccat caagcccata ataatcaatg ctcaaccaac tctgaggcag 7140 gtgatgcgcc acttcggaga acaagccgtt gctcaataca tgaatagcct tcaagttggg 7200 aaacctttta cagtgaaagg agccgtgact gctggatacg ctaatgttca agatgcatgg 7260 ttaggcattg acttccttcg ggacacaatg caattaacga caaaacagat ggaggtcaag 7320 catcaaataa tcgcagcgaa cgttacaagg cgtagaatcc gtgtttttgc tcttgcagcg 7380 ccgggggata gtgatgaatt agacacagaa aggcacgttg tcgacgatgt ggctaggggt 7440 cgtcatagtc tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcaact 7500 gtgtgtttta ttttaatcat gttttatgct ttgtgtttgt ttgttgtgac acttgaacca 7560 ggtacagctg gcaggtgttt cggcatggtg tggttaggca attggttcgc accggttgtc 7620 taagaagcgc tatgtatcac gtggttggtt aattcatagt ttatatggat taatcaagaa 7680 gcgtctatcg cccaaaaggg caccagaaaa tggttgcgcc attcgtgacg taatcagttt 7740 ttggagtttg gctaggtaac ttgtcgcctt tccaaaagcc 7780 //