ID FJ999758; SV 1; linear; genomic RNA; STD; VRL; 7781 BP. XX AC FJ999758; XX DT 25-JAN-2010 (Rel. 103, Created) DT 19-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Sweet potato mild mottle virus isolate KAP88 polyprotein gene, partial cds. XX KW . XX OS Sweet potato mild mottle virus OC Viruses; Riboviria; Potyviridae; Ipomovirus. XX RN [1] RP 1-7781 RX DOI; 10.1099/vir.0.016089-0. RX PUBMED; 19923261. RA Tugume A.K., Mukasa S.B., Kalkkinen N., Valkonen J.P.; RT "Recombination and selection pressure in the ipomovirus sweet potato mild RT mottle virus (Potyviridae) in wild species and cultivated sweetpotato in RT the centre of evolution in East Africa"; RL J. Gen. Virol. 91(Pt 4):1092-1108(2010). XX RN [2] RP 1-7781 RA Tugume A.K., Mukasa S.B., Valkonen J.P.T.; RT ; RL Submitted (30-APR-2009) to the INSDC. RL Department of Applied Biology, University of Helsinki, PO Box 27 RL (Latokartanonkaari 7), FIN-00014, Helsinki, Finland XX DR MD5; a47949164a7fdb00fe494a053562498f. XX FH Key Location/Qualifiers FH FT source 1..7781 FT /organism="Sweet potato mild mottle virus" FT /host="Ipomoea obscura" FT /isolate="KAP88" FT /mol_type="genomic RNA" FT /country="Uganda:Kapchorwa" FT /collection_date="01-Apr-2007" FT /db_xref="taxon:41459" FT 5'UTR 1..139 FT CDS 140..>5867 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B0" FT /db_xref="InterPro:IPR001456" FT /db_xref="InterPro:IPR001650" FT /db_xref="InterPro:IPR014001" FT /db_xref="InterPro:IPR025910" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR031159" FT /db_xref="InterPro:IPR042308" FT /db_xref="UniProtKB/TrEMBL:D2T0B0" FT /protein_id="ACS29473.1" FT /translation="MGKSKLTYKQCIAKWGKAALEAQNNGSKRSVSVGTHQIAANIFAF FT YDAKDYHLFAMGKRGGLTPAAEQLRIAIERGTIYKVQYNCHFCPDCDEIVDSEEGWFCE FT DCGSQFNKCDDNILGNKNDVARALGGWTEYEDATWASFEAAKADMLEVAPTVGQLEKEI FT RAIEKSAGKRLTAYEEEMLEELAYKLDVAKMNEEKQEEAIEETTFSISNDEFPALKESQ FT DEEVNGVVKETTEVSANEVAKEVEKPAEFETTHEKNDEPINDVDNAHVVAAPVVVKSVI FT KSGTVTGKQELVEKPKTTMWVTKPKTSAAIPATPSKSAVWVAKSRPASALSIVESIVKP FT AVRACNDVINIGAMVCPIMVSAVESHSHQYEKPDGILNARVDDATKEEEPVIKYNITFG FT SFNYEVSAKGERVQAAVQLDEMIEGPDTEPILICQTGSSHKSETKKASKGLFVQDRFSV FT IGNKVLCKSFPAFKNFMNETRLGGIYRTRKGNYKNAALRLLKATKVQVFYDGIKDVFEC FT PYCHMSSNELEGLNGDNCEKCKDLFYKHIDDPRKVEEEYLMIPLVPIDQHVHEEHSIIS FT RAKWEAHESICEGEVNIAKVFDGKLTASKKKFKTKQAPNVANIPLDDFMQELVEICLER FT NTPIEIIGGVKSFNVVKLRHTTRDISKSGEDDMYPTEREWFCHKNKLCLCGGFDREKKV FT RSSEVRPGWSGVILHKNQVAECDWNKFVFIDDICVVQGRNLITNKIENALEKKGATRLK FT QIQFYASSVVPNFKDEFDRASRLKADHEPDESSNNELIGRLAKLVAAVIPKGHLYCKAC FT CFRVIKSKRVDIVNALNKAKQRGERDEFIYDELIKLFELQAPPPYKIATIINDDDVLRT FT LGLGGELYSGRLSLIMQHLQGLHTSISMLHQTLAGAQNDQQIDRQALHNQVRILHQRNE FT EHMPFLKKAVDEIQLLNATDQVANARELYLDTRATSTGDFDILRKYQSMCEFFPNIMSR FT ANKAGMEVIKSETSLSKAFALMNSAKSMSAIHTLIGEDIIEHVNGACLLKNDKTSFSIG FT CKQGVDGSKMYGPLCPTKQHVRIHRVESNMQIPLPTFHDATVWEFNEGYCYANQFAIMV FT GFINEDEMEFYKNQMNQVVLNLGAWPTFEQYLIELRAISLDYPKVRGCPAAIHLVSHAN FT KLIHVLGQFGTINQGWHALEVATVGELVDLCHKKVEGEMLTYKVGGIYDWVTKKNAFID FT LFEHHPENVFKICTSPSVLWLFARSCEKHDFINYIMARDHSLVGLFIKLEYIGKHLHIF FT QNVDDVCVEYAASMREIIEEHADIHGLQDSVVDRMVHAYHNEVREANKYELVDRILEKN FT IGLTAKEISSRKLITMYHQDLFSWHEWQRLRLMPHSLNAQKLFEEANERAYGKQSWNLR FT VIWGACKEVLYAATRGVFVKVKGTTVRCADAVVYGFYGRTRAIVTSWASEAWGAIFTSC FT LRALVVMVVTAYISTWIPKIRKMIKREKKQFEDLGGGELYVEQHGKREEAFLFKICAIF FT ALIAGIIDYEWGAAACATMNKVKSICTVLGSVGIESHANESDDKVEQDLKESLKFTSFE FT IEVPNVVLSQDDMTFERWFQHQIQYGNVCADPIYSGPLRMLTITENSARELAMNIRTSG FT ETDLRVYSGVGGGKSTRLPKELSVFGHVLICVPTRVLAESLLTSFMVLFNMDVNVAYRG FT RIHTGNAPITIMTYGYAFNFLVHKPMELNRYDYVLLDEIHTNPVEFAPLFSFIKTTDPK FT KKIVKLSATHAGMDCECETRHKIKVETLSEMPIESWVSMQGSGVVGDATSAGDVILVFV FT ASFKDVDTCANGLRSKGFKVLKVDSRNFRRDADVDKQIQSLGEGKKFIVATNIIENGVT FT FNIDVVVDFGEKISPNLASDERCITLGRQRISRAE" FT mat_peptide 140..2413 FT /product="P1 proteinase" FT mat_peptide 2414..3775 FT /product="helper component proteinase; HC-Pro" FT mat_peptide 3776..4657 FT /product="P3 protein" FT mat_peptide 4658..4813 FT /product="6K1 protein" FT mat_peptide 4814..>5867 FT /product="cytoplasmic inclusion protein; CI" FT gap 5868..5967 FT /estimated_length=unknown FT CDS <5968..7473 FT /codon_start=1 FT /product="polyprotein" FT /note="coding region disrupted by sequencing gap" FT /db_xref="GOA:D2T0B1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D2T0B1" FT /protein_id="ACS29474.1" FT /translation="GNNSGQPSTVVDNTLILMIAMEYAIAKVFVTRPDIKYVCNGDDLL FT INCPRGIASAISEHFKDAFADLSLNYDFDHVCDKITDVDFMSHSFMWLDAEQMYIPKLD FT KERIVAIWEWERSDEQFRTRSPLNAAYIESFGYEDLMAEIEKFAHFWAKKHGLNDVLME FT REKVRDLYVNEDFDASAFEKFYPETFSPFDVYVEPHASTSKTIEELQKEMEDLDADTTI FT TVVQRETQKARIREQIETLRAQQIVRPSEAQLQPDVNPTQIVTFEPPRVTGFGALWIPR FT QQRNYMTPAYIEKIKAYVPHSNLIESGLASEAQLTSWFENTSRDYQVSMDVFMSTILPA FT WIVNCIINGTSQERTNEHTWRAVIMANMEDQEVLYYPIKPIIINAQPTLRQVMRHFGEQ FT AVAQYMNSLQVGKPFTVKGAVTAGYANVQDAWLGIDFLRDTMQLTTKQMEVKHQIIAAN FT VTRRKIRVFALAAPGDGDELDTERHVVDDVARGRHSLRGAQLD" FT mat_peptide <5968..6564 FT /product="nuclear inclusion body protein; NIb" FT mat_peptide 6565..7470 FT /product="coat protein; CP" XX SQ Sequence 7781 BP; 2395 A; 1363 C; 1883 G; 2040 T; 100 other; aaaataaaaa tgatatagag aaaatttgaa agaaaagtgt gaacttagca aacttatttg 60 caactcagct ttactttaaa gactttattt caattttatc gaactgtggt gtccgcttag 120 aaacggatca gacgcggaaa tggggaaatc caaactcact tacaaacaat gcattgctaa 180 atggggaaaa gccgcacttg aagcgcaaaa caacggatca aaaagaagtg tctctgttgg 240 cactcaccaa attgcggcaa atatttttgc gttctatgac gcaaaagatt accatctatt 300 tgctatgggc aaaagaggtg gactgactcc agcagctgag caactgagaa tcgcaattga 360 gagaggaacg atttacaagg tgcagtacaa ctgccacttc tgtcctgatt gtgacgaaat 420 tgtcgattct gaggaaggat ggttttgtga ggattgcggt tcgcaattca acaagtgcga 480 cgacaacata cttggtaaca aaaatgatgt cgcgcgcgct cttggcgggt ggactgaata 540 cgaagacgcc acctgggcgt cgtttgaggc tgctaaagct gacatgcttg aagtagcacc 600 aactgtgggt caacttgaaa aagagatcag agccatagaa aaatcagctg gtaaaagact 660 caccgcttat gaggaagaaa tgcttgagga gctagcctat aaacttgatg tggccaagat 720 gaacgaagaa aagcaggaag aagctataga ggagactact ttttcaatat ccaacgatga 780 atttccggct cttaaagaat cacaagatga agaagtcaat ggggtcgtta aggagactac 840 tgaggtaagc gcaaatgaag tcgcgaaaga ggttgagaag cctgcagaat tcgagactac 900 acatgagaaa aatgatgaac caatcaacga cgttgataat gcgcatgtgg ttgcagcacc 960 tgtcgtggtt aaaagtgtga tcaaatctgg aacagtaact ggcaagcagg agttagttga 1020 gaaaccaaaa acaactatgt gggttacaaa gccaaaaact tctgctgcaa ttcctgccac 1080 gccatctaag tcggctgtct gggttgctaa gtccaggcca gcgtctgcac tttccattgt 1140 tgaatcaatt gttaagccgg cagtgagagc ttgtaatgat gtgatcaata taggcgctat 1200 ggtgtgtcct atcatggttt cagcggttga atcacatagc catcaatatg aaaagcctga 1260 tgggattcta aacgcacgag ttgatgatgc aacgaaggag gaagagccag tgatcaaata 1320 taatataact tttggctcat tcaattatga agtaagtgca aaaggggaac gagttcaagc 1380 tgctgtccaa cttgatgaga tgatagaagg gcctgacact gaacccattc tgatttgcca 1440 aacaggaagc tcccataaat ctgaaaccaa gaaggcatca aaagggcttt ttgttcagga 1500 tagattctct gtaattggga ataaggttct gtgcaagtca tttcctgctt tcaagaattt 1560 tatgaatgaa acaaggttgg gaggaatcta cagaacaaga aaagggaatt acaaaaacgc 1620 cgcattgcgt ttactgaagg caaccaaagt tcaagtattt tatgatggga taaaggatgt 1680 tttcgagtgt ccgtattgcc acatgagcag taatgaactg gagggtctta atggagataa 1740 ttgtgaaaaa tgcaaggatc tattttataa acacattgat gatccaagaa aagttgagga 1800 agaatatctt atgattcctc tcgtgcccat tgatcagcac gttcatgaag aacatagcat 1860 cattagtagg gctaaatggg aagcgcatga atccatctgt gaaggagaag tgaatattgc 1920 caaagtcttt gatggcaaac taactgcaag taagaagaaa tttaaaacta agcaagcgcc 1980 aaatgttgca aatataccgc ttgacgactt tatgcaggag ttagttgaaa tttgtcttga 2040 gagaaacacc cctattgaaa ttattggggg tgtgaaatct tttaatgtgg ttaagttaag 2100 acacaccacg agggacatta gcaagtctgg tgaggatgat atgtatccaa ctgagaggga 2160 gtggttttgc cacaagaata aactatgttt gtgtggtgga tttgatcgtg agaagaaagt 2220 tagaagctcc gaggtgcgtc caggttggag tggagtgatt ttacataaga atcaagtggc 2280 ggaatgcgat tggaacaagt tcgtcttcat tgatgacatt tgtgtggtgc aaggtagaaa 2340 cttgatcacg aataagattg agaatgcact tgaaaagaaa ggggctacta gacttaagca 2400 aatacaattc tatgcaagtt ctgttgtacc taatttcaag gacgaattcg acagggccag 2460 tcggctgaaa gctgatcacg aaccagatga atcgtctaac aatgaactta ttggcaggct 2520 ggctaagctt gttgcagcag tcatcccaaa aggccatttg tactgcaaag catgctgttt 2580 cagggttatc aagagtaagc gtgtagacat agttaacgca ttgaataagg ctaagcagcg 2640 tggcgaacga gatgagttta tttatgatga gctcatcaaa ctcttcgagc tacaagcacc 2700 accaccatat aagattgcaa cgataatcaa tgatgacgac gtgttgcgaa cattaggatt 2760 gggtggagaa ctatatagtg gacgactgag tctcataatg caacatttgc aaggactgca 2820 tacgtcgata tcaatgctgc accaaacact tgcaggggcc cagaacgatc aacaaattga 2880 caggcaagcg ctccacaacc aagtgcggat tttacatcaa agaaatgagg agcatatgcc 2940 tttcctaaag aaagcggttg atgaaattca gcttttaaat gcaacagatc aagttgctaa 3000 tgctcgggaa ttatacttgg atactagggc gactagtact ggagatttcg acattttacg 3060 aaaataccag agcatgtgcg agttctttcc caatatcatg agccgagcca ataaagcagg 3120 aatggaagtt attaaatctg agacatcatt gagcaaagct tttgccctta tgaacagtgc 3180 taagtcaatg agcgctattc atacgctcat aggggaagac attatagaac atgttaatgg 3240 agcttgcttg ctgaagaacg acaagacatc tttttcaatt ggttgcaagc aaggtgttga 3300 tggtagcaag atgtatggtc cgctttgtcc gactaaacag catgtacgaa tccaccgggt 3360 tgaatctaac atgcaaattc ccttgccaac atttcatgat gcaaccgtct gggaattcaa 3420 cgaaggttat tgttacgcta atcaatttgc tataatggtt ggtttcatca acgaggatga 3480 aatggagttt tataaaaatc agatgaatca agttgtgttg aacttagggg cttggccaac 3540 ttttgagcaa tatttaattg agctacgagc aatctcgctt gattacccaa aagttagggg 3600 gtgtccggct gccatccatt tagtttccca tgcaaacaag ctaattcatg ttttgggaca 3660 atttggaacg ataaaccaag ggtggcatgc acttgaagta gcaactgtgg gtgagcttgt 3720 cgacttgtgc cataagaaag ttgaaggtga gatgttaact tataaagttg gtggcattta 3780 tgactgggtg actaagaaga acgcttttat cgatttattt gaacatcatc cagaaaatgt 3840 attcaaaatt tgtacatcgc catcagtgtt gtggttgttt gctcgcagct gcgagaaaca 3900 tgattttatc aactacatta tggccaggga ccactcattg gtaggtctgt tcattaaatt 3960 ggaatatatt ggcaagcatc ttcatatttt ccaaaatgtt gacgatgttt gtgttgaata 4020 cgcagcgtct atgcgggaaa taattgaaga gcatgctgat attcatgggc tgcaggattc 4080 agttgtagat agaatggttc atgcatatca taatgaggtg agggaagcaa ataagtatga 4140 gctagttgat agaattcttg aaaaaaacat tggattaacc gcaaaagaaa tttcatcgcg 4200 aaagctcatc acaatgtatc atcaagactt gttctcttgg cacgaatggc agcgtttgag 4260 attaatgcca cattccttga atgcgcagaa actcttcgaa gaggcaaacg agcgcgcata 4320 cgggaaacaa tcatggaatt tacgcgtgat ttggggtgcg tgcaaggaag tgttgtatgc 4380 agccacacgc ggagtttttg taaaagtcaa aggaacaact gtgcgctgtg ccgacgccgt 4440 agtgtatggc ttctatggta gaacacgagc aattgtaaca agctgggcta gtgaggcctg 4500 gggggctatt tttacgtcgt gtctgagagc attagttgtt atggtggtta cggcgtacat 4560 atcaacctgg attcctaaga ttaggaaaat gatcaaacgc gagaagaagc agtttgaaga 4620 tcttggaggt ggagagttat atgtggagca acatggcaaa agagaggagg catttttgtt 4680 taagatttgc gccatctttg cactcatagc aggcataatt gactacgagt ggggagcagc 4740 tgcatgcgca acaatgaaca aagtcaagag catatgcact gtccttgggt ctgttgggat 4800 tgagagccat gccaatgagt ctgatgataa agttgagcaa gacttgaagg aatcccttaa 4860 attcacatct tttgagattg aagtgccaaa tgtggttcta tcacaggatg atatgacttt 4920 tgaaaggtgg ttccaacacc aaattcaata tggcaacgtg tgtgcagacc ccatctatag 4980 tggtccgcta cgcatgctaa caatcacaga aaattctgcg agagagctag caatgaacat 5040 tcgcacatca ggggaaactg acttgcgtgt ttatagtggt gttggtggag gaaaatcaac 5100 aaggttaccc aaggaactca gcgtgtttgg gcacgtacta atttgtgttc ccacgagagt 5160 tctagcagaa agcttgttaa catcattcat ggtacttttc aatatggatg ttaatgtggc 5220 ttatcgagga aggatacata ctggcaacgc accaatcaca ataatgactt atggttatgc 5280 attcaacttc ttggtgcata aaccaatgga attaaaccga tatgattatg tgttgctaga 5340 tgaaattcac accaatcctg ttgaatttgc acctttgttt tcttttatca aaaccacaga 5400 tccaaagaag aaaattgtta agttatcagc gactcatgct gggatggatt gcgagtgtga 5460 aaccaggcac aaaattaagg tggaaacctt aagtgaaatg ccaattgaaa gctgggtttc 5520 tatgcaaggt tctggggttg ttggtgatgc gacatctgct ggggatgtaa ttctggtttt 5580 tgttgcatct ttcaaggacg tcgatacatg tgctaatgga ttacgatcta aaggcttcaa 5640 agttctgaag gtcgatagta gaaactttag gcgtgacgca gacgtggata aacaaatcca 5700 atcactgggt gaagggaaga aattcatagt cgccacaaat ataatcgaaa atggagtgac 5760 atttaacatt gatgttgtcg tcgattttgg cgagaaaata agccccaatc ttgcgagcga 5820 tgaacgatgt atcacattag gaaggcagag aatatcgaga gcagagannn nnnnnnnnnn 5880 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 5940 nnnnnnnnnn nnnnnnnnnn nnnnnnnggt aacaacagtg ggcagccctc aacagttgtt 6000 gataacacgt tgattctgat gattgctatg gaatacgcga tagctaaggt ttttgtcaca 6060 cgtcctgaca taaagtacgt ctgcaatggg gacgaccttc taattaattg tccaaggggc 6120 attgcaagcg ccattagtga gcacttcaaa gatgcattcg cagacttaag cttgaactac 6180 gattttgatc atgtttgtga taaaatcaca gacgttgatt ttatgagtca tagtttcatg 6240 tggctggatg ccgagcagat gtacatacca aagctggata aggagcgaat tgtggcaatt 6300 tgggagtggg aaaggagtga tgagcaattc agaacgagga gtcccttgaa cgctgcttat 6360 attgaaagtt ttggctatga agatttaatg gctgagattg agaaattcgc acacttttgg 6420 gctaaaaaac atggtctcaa tgacgtcttg atggagcgag agaaagttag ggatttgtac 6480 gtcaatgaag atttcgatgc atcagctttc gaaaagttct atccggaaac attttcgcca 6540 tttgacgttt atgttgaacc gcatgcttcg acatccaaga caatcgagga gctacagaaa 6600 gagatggagg atttagatgc agacacaaca attactgtgg ttcagaggga gacacagaag 6660 gcgagaataa gagagcaaat tgaaacactt agggcacaac aaattgtgag accttctgag 6720 gcacagctac agcctgacgt aaatcccacg caaatcgtta cgtttgaacc accaagagtc 6780 actggatttg gcgctttatg gattccgcgc caacaaagga actacatgac gccagcttac 6840 atcgagaaga taaaggctta tgtcccacat tcaaacttga tcgaatctgg actagctagt 6900 gaagctcaat tgaccagttg gttcgagaac acgagcaggg attatcaagt tagtatggat 6960 gttttcatga gtacaatact gccagcatgg attgtcaatt gcataattaa tggaacatca 7020 caagaacgca ctaatgagca cacatggaga gctgtgatta tggcgaatat ggaggatcag 7080 gaagtgcttt attaccccat caaacccata attatcaatg ctcaaccaac tctgaggcag 7140 gtgatgcgcc atttcggaga acaagctgtt gctcaataca tgaatagcct tcaagttggg 7200 aaacctttta cagtgaaagg cgccgtaact gctggttacg ctaatgttca agatgcttgg 7260 ttaggtattg actttctacg ggacacaatg cagttgacaa caaaacagat ggaagttaag 7320 catcaaatta tcgctgcgaa cgtcacaagg cggaagatcc gtgtttttgc tcttgcagca 7380 ccgggggatg gcgatgaact agacacagaa aggcacgtcg tcgacgatgt agctaggggt 7440 cgtcacagtc tgagaggagc tcaactcgac taaatgagca cgttatcttt aatttcaact 7500 gtgtgttttt attccaatta cgtcttatgt tttgtgtttg tttgttgtgg cacttgaacc 7560 aggtacagct ggcaggtgtt tcggcatggt gtggttggac aattggttcg caccggtagt 7620 ctaagaagcg ctatgtatca cgtggttggt taattcatat tttgtatgga ttaatcaaga 7680 agcgtctatc gcccaaaagg gcaccagaaa atggttgcgt cattcgtggc gtgatcagtt 7740 tttggagttt ggctaggtaa cttgtcgcct atccaaaagc c 7781 //