ID FJ973620; SV 1; linear; genomic RNA; STD; VRL; 6586 BP. XX AC FJ973620; XX DT 06-AUG-2009 (Rel. 101, Created) DT 11-APR-2025 (Rel. 144, Last updated, Version 3) XX DE Mamastrovirus 9 isolate VA1, complete genome. XX KW . XX OS Mamastrovirus 9 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; OC Stellavirales; Astroviridae; Mamastrovirus. XX RN [1] RP 1-6586 RX DOI; 10.1128/JVI.00998-09. RX PUBMED; 19706703. RA Finkbeiner S.R., Li Y., Ruone S., Conrardy C., Gregoricus N., Toney D., RA Virgin H.W., Anderson L.J., Vinje J., Wang D., Tong S.; RT "Identification of a novel astrovirus (astrovirus VA1) associated with an RT outbreak of acute gastroenteritis"; RL J. Virol. 83(20):10836-10839(2009). XX RN [2] RP 1-6586 RA Li Y., Finkbeiner S.R., Ruone S., Conrardy C., Gregoricus N., Toney D., RA Virgin H.W., Anderson L.J., Vinje J., Wang D., Tong S.; RT ; RL Submitted (29-APR-2009) to the INSDC. RL Division of Viral Diseases, Centers for Disease Control and Prevention, RL 1600 Clifton Rd, Mail Stop G18, Atlanta, GA 30329, USA XX DR MD5; 22741b3a29a7e3654a961d9b43d2479e. XX FH Key Location/Qualifiers FH FT source 1..6586 FT /organism="Mamastrovirus 9" FT /host="Homo sapiens" FT /isolate="VA1" FT /mol_type="genomic RNA" FT /geo_loc_name="USA" FT /isolation_source="stool samples from an outbreak of acute FT gastroenteritis in a child care center" FT /collection_date="Aug-2008" FT /db_xref="taxon:1239573" FT 5'UTR 1..38 FT CDS join(39..2654,2654..4222) FT /codon_start=1 FT /ribosomal_slippage FT /product="non-structural protein 1ab" FT /note="non-structural polyprotein containing putative FT serine protease and RNA-dependent RNA polymerase; ORF1ab" FT /protein_id="ACR23347.1" FT /translation="MERSYKPSGSSHYDPYDRVLQHGSVKARIQGLQLNKVAKTKLEEI FT FSCGGPLCFGYGDVETTRVSNGVVEPQPLIVKTVYVSGVREGNEYVTYLFKPGLNDWVE FT VDANIHKPTAIVGVLYHEYNRLKLENESLKTERSSLQLDISILRHELERARPPTKIIRP FT FSVGCIILYGLLIGLLFSHISQAFRTGVCLDPDVGETLKPQTCINWKWDGGIESDETIP FT FYDRFTAWYTGLIQQFKSMYNDIVIDLVVQAFGFAYTWTAIALMIGTYYMLKSTSPAYM FT LVTLMMATVSRMQLFAISAIPNMEVTSMFSLWCCMVLYYFNQVAAMAASLMIAAMCSIV FT CLFMGDAEYVKVIRGHGVVILTVVVSHIFSVLLVPHWVTVFLIVAFRIVRLIGAVVGEK FT IEVRNSEGKVTSVIPTTTSWLNRISGFVQSKFTQKVRTGIMSTARVIPNGVVIVESKES FT SGTGFRVQNYIVTAGHVVGNETQIKVKWGDVNVYTKVVYMHPTKDIAYLALPSEYQALP FT TYKFAKLIEDGTVVITSMEDCGVLAVAVTEGVIVKDNITYAVSTRNGMSGSPVTNVDGR FT IVGIHQANTGFTGGAVIIKQEDLPPQKKPQREIDLENKIKELEDALKGQMNQGLNENQI FT VELIRLAVGREIEILRHEINMNQAKGKNKRKNHHKRRRKGKVWTEEEYKDLLEKGFTRQ FT QLRDMAEVLREADYSEDDESDEYDTGYPQWSDPEDSEEVEREWFGPKKKILDEVEEGWS FT NTDFWEQCQKVWKEMEPMPEESVNTLPSHLSDKYGITCYVVTKSDMEALARDLQEYQAK FT VEEKIKANVVRGQWLEGVNPKTIISELDELWLKLNHLMWTHGIVPFIQRKKINRKKQQK FT NLEGGPETGAPKPEQLRLGYWRELLKPGEYYLTPPHCPLVGVLPIDRPISDYDEPIDDL FT LNLLPKCEEKPPYAPSTWGPEAYRRSFDKFFYRKPTENIREKYPREWKFAMSVLRREFD FT FLQDSVLIDITSTSKNADSTPAYPKTLWWKTETEYLKERGYQDYIKELDSIRSGERPDV FT LWYLFLKKEILKISKIEEEDIRQIVCADPIFSRIGCVFEEHQNQLMKNRTLTRMGQCGW FT SPFMGGFHKRIKRLVDKGNDYFIEFDWTRYDGTIPNEVFKAIKDFRFSCLRGDLQTKEN FT RDVYNWYCENIFRRYVMLPSGEVTIQDRGNPSGQISTTMDNNICNVFFQAFEFAYLNTE FT LDSDELKENWDKYDSLIYGDDRLTTTPILCDNYVDRVIKMYADVFGMWVKREKVKVSNE FT INGLTFCGFTVQESNGLFVPIPTDTDKLLAGLITPIKKLPDILSLYGKLLCYRILGHNL FT PDDHKFKNYILVALEVVARHIRASGGEEPYYITDSMLDRLWRGGPKQSHGW" FT CDS 39..2699 FT /codon_start=1 FT /product="non-structural protein 1a" FT /note="putative serine protease; ORF1a" FT /protein_id="ACR23348.1" FT /translation="MERSYKPSGSSHYDPYDRVLQHGSVKARIQGLQLNKVAKTKLEEI FT FSCGGPLCFGYGDVETTRVSNGVVEPQPLIVKTVYVSGVREGNEYVTYLFKPGLNDWVE FT VDANIHKPTAIVGVLYHEYNRLKLENESLKTERSSLQLDISILRHELERARPPTKIIRP FT FSVGCIILYGLLIGLLFSHISQAFRTGVCLDPDVGETLKPQTCINWKWDGGIESDETIP FT FYDRFTAWYTGLIQQFKSMYNDIVIDLVVQAFGFAYTWTAIALMIGTYYMLKSTSPAYM FT LVTLMMATVSRMQLFAISAIPNMEVTSMFSLWCCMVLYYFNQVAAMAASLMIAAMCSIV FT CLFMGDAEYVKVIRGHGVVILTVVVSHIFSVLLVPHWVTVFLIVAFRIVRLIGAVVGEK FT IEVRNSEGKVTSVIPTTTSWLNRISGFVQSKFTQKVRTGIMSTARVIPNGVVIVESKES FT SGTGFRVQNYIVTAGHVVGNETQIKVKWGDVNVYTKVVYMHPTKDIAYLALPSEYQALP FT TYKFAKLIEDGTVVITSMEDCGVLAVAVTEGVIVKDNITYAVSTRNGMSGSPVTNVDGR FT IVGIHQANTGFTGGAVIIKQEDLPPQKKPQREIDLENKIKELEDALKGQMNQGLNENQI FT VELIRLAVGREIEILRHEINMNQAKGKNKRKNHHKRRRKGKVWTEEEYKDLLEKGFTRQ FT QLRDMAEVLREADYSEDDESDEYDTGYPQWSDPEDSEEVEREWFGPKKKILDEVEEGWS FT NTDFWEQCQKVWKEMEPMPEESVNTLPSHLSDKYGITCYVVTKSDMEALARDLQEYQAK FT VEEKIKANVVRGQWLEGVNPKTIISELDELWLKLNHLMWTHGIVPFIQRKKINRKKQQK FT NLKGAPKQGPQNQNN" FT misc_feature 2648..2654 FT /note="ribosomal frameshift signal" FT CDS 4212..6488 FT /codon_start=1 FT /product="capsid protein precursor" FT /note="ORF2" FT /protein_id="ACR23349.1" FT /translation="MAGRQPQQALPKAAAKQIAKEVVKQEKKEPVVRKKKQFYPNPKFN FT NRFNKKFVKKQLDKNLKKQGFEGPKPRFAVTVSATIGKVGPNKSQGPELQISTFMHPSL FT MKEPNDGTNFGPLQSAAAQWGLWRLKNLSVTFTPLVGPSAVTGSVFRISLNMAQSPGAT FT SWGGLGARKHKDVAVGKQFTWKLQKGDLTGPRETWWLTDTNEEGAQSCGPLLEIHGLGE FT TTSTYKDAAWAGDLFIVEVRGRWEFANYNSKPALGMLERVTETTNASIEVANGNMIMTV FT PQNSQLARHMSERFERTTNASTVGETIWQIVDEGAGLVANVAPPPFTWLIKGGWWFVKK FT LLGRSANTDVQYLVYASLADAQNNRPVEAQNYTKVTRQTTLSSTQINAPNTGPNTTTGS FT IGNNNQQWPIPPTGVPVGDFYVCGRMTTLHMGGQSGIQATTLVNGMIYRTDHPEPSTSP FT VSNWEFTVLENNTIVGAGMGCVWFQKSEALVWTLDGQKLSGWNTLDGVGTTQLTVAWRQ FT HNRTIYGWANVVAWNSEEWHTNAEQPHQPILRLTYWLVKINVLSEPEDFDVVQKSPLAY FT LEDYTTAQSKSAIQKLNFQTFQKPEGGGTLRAQYSTTPRQGDFAVIWQIGRHNFDMSTG FT KGTPVESLSDYVMPQQKDAHIGMWYRALTSVGPRSDVLTLHFHLPTVEKDLVEQIIDQI FT QHRYRLTPLDSDSDSSSSDSDFEPEDRFEKLKIYEGLRSSGLSHHVSDGAAIAVKKKLR FT RGHAE" FT 3'UTR 6489..6586 XX SQ Sequence 6586 BP; 2047 A; 1192 C; 1570 G; 1777 T; 0 other; ccaaatttgt tggctgtgcc gattggcact ggtgggtcat ggagcgctca tacaagccta 60 gtggcagtag ccactatgat ccctatgata gggtactaca acatggcagt gtcaaagcac 120 ggatacaggg ccttcagctt aataaagtag ctaaaaccaa gcttgaagag attttttcat 180 gtggtgggcc cttgtgtttt ggctatggtg atgttgagac tactcgtgtc tcaaatggag 240 ttgttgagcc acaaccttta attgttaaga cggtctatgt ctcaggagtg agagagggta 300 atgaatatgt cacttacctt tttaaaccgg gacttaatga ttgggttgag gttgatgcta 360 acatacataa acctactgcc attgttggtg tattgtatca tgagtataac aggcttaaat 420 tagagaatga aagtttgaaa acagagcgct catctttaca attggatata tcaatcctca 480 gacatgagct tgagcgtgca agaccaccaa ctaaaataat taggcctttc agtgttgggt 540 gcattatact gtatggttta ctgattggcc ttttgttttc acacatctca caagctttta 600 ggactggtgt gtgtcttgat ccagatgttg gtgaaacact aaagccacaa acctgtataa 660 actggaagtg ggatggtgga attgaatcag atgagactat tccattttat gataggttta 720 cagcttggta tacaggttta atacaacagt ttaaaagtat gtacaatgac attgtcattg 780 atttagtggt ccaggctttt ggctttgctt acacatggac agctatagca ctgatgatag 840 gcacatatta tatgttgaaa tccaccagcc cagcatatat gctggtgaca ttgatgatgg 900 caactgtgtc aagaatgcag ttatttgcaa tatctgctat acctaatatg gaggtcactt 960 caatgttttc attgtggtgc tgtatggtat tatactattt taatcaggtt gcagcaatgg 1020 ctgcgtcatt aatgatagca gctatgtgct ctattgtttg ccttttcatg ggtgatgctg 1080 agtatgtgaa agtgataagg ggccatggcg tggttatctt aactgttgtt gtttcccaca 1140 tctttagtgt cttgttagtg ccacactggg tcacagtgtt cctaatagtt gcttttagaa 1200 ttgttaggtt aattggagca gttgttggtg agaaaataga agttagaaat tctgagggaa 1260 aagttacaag tgtcatacca acaacaacgt cctggttaaa tcggatttct ggatttgttc 1320 agtccaaatt tacccaaaaa gttagaactg gtataatgtc aacagctaga gtgataccta 1380 atggtgttgt cattgtcgaa tcaaaagaaa gctcaggtac tggcttcagg gttcaaaatt 1440 acatagtcac agccgggcat gttgttggca atgaaacaca aataaaggtt aagtggggag 1500 atgttaatgt ttacacaaaa gttgtttaca tgcatcccac taaggatata gcctatcttg 1560 ccttaccatc agagtatcaa gcactcccaa catacaagtt tgctaagctg attgaggatg 1620 gcaccgttgt cataacatca atggaggact gtggtgtcct tgccgttgcg gttacagaag 1680 gtgttattgt taaagataac ataacatatg ctgttagcac ccgaaacggc atgagtggtt 1740 cacctgttac aaatgttgat ggtagaattg ttggcataca tcaagccaac actggattta 1800 caggcggtgc tgtcattata aagcaagagg atttaccacc ccaaaagaag ccacaaaggg 1860 agatagacct tgagaacaaa attaaagaat tagaggatgc ccttaaaggt cagatgaatc 1920 aaggcctaaa tgaaaatcag atagtcgaat tgattcggct tgctgttggt cgtgagatcg 1980 aaatcttacg gcatgaaatc aatatgaacc aagcaaaagg taaaaataaa aggaagaatc 2040 accacaagag gcgcaggaag ggaaaagttt ggactgaaga ggagtacaaa gaccttttgg 2100 aaaagggatt taccagacag caattacggg acatggctga agtgctaaga gaggcagatt 2160 attctgaaga tgatgaaagt gatgagtatg acactggtta tccgcaatgg tcagacccag 2220 aagactctga ggaggttgaa agggaatggt ttgggccaaa gaaaaagata cttgatgagg 2280 ttgaagaagg ttggtccaat actgatttct gggagcagtg tcagaaggtg tggaaggaga 2340 tggagcccat gccggaagaa tctgttaaca ctttaccgtc acacttgagt gataagtatg 2400 gtattacatg ctatgttgtc acaaagagtg atatggaagc cttagcccgt gatttgcagg 2460 aataccaagc caaggttgag gagaagatta aggcaaatgt tgttcgtggt cagtggcttg 2520 agggagtcaa tccaaaaact atcataagtg agttggatga attatggctg aaactgaacc 2580 acttaatgtg gacccatggt atagtccctt tcatacagag gaaaaaaatt aacagaaaga 2640 aacagcaaaa aaacttgaag ggggccccga aacaggggcc ccaaaaccag aacaactaag 2700 gcttgggtac tggagagaac tattaaaacc tggtgaatat tatcttaccc ccccacattg 2760 ccccttagtt ggtgttttac caatagatag gcctataagt gattatgatg agccaattga 2820 tgatttacta aatttgttgc caaaatgtga ggaaaagccg ccatacgcac cgtctacatg 2880 gggaccagaa gcgtataggc ggtcatttga taagttcttt tacagaaagc caactgaaaa 2940 tataagagaa aaatatccta gggagtggaa atttgcaatg tcagtgctca gaagagaatt 3000 tgatttccta caggacagtg ttcttattga cataacatcc acttcaaaga atgctgactc 3060 cacacctgct tatccaaaga cattatggtg gaaaactgaa acagaatacc ttaaagagcg 3120 gggttaccaa gattacatta aagagttaga ttcaataaga tctggagaga ggcctgatgt 3180 cttatggtat ttatttttaa aaaaagagat tttaaagata agtaaaattg aggaagaaga 3240 cattaggcaa attgtttgtg ctgatcccat tttttctaga attggttgtg tatttgaaga 3300 gcaccaaaat caattgatga aaaatcgaac cctgacacgt atgggtcaat gtggatggtc 3360 accatttatg ggaggtttcc ataaacgcat aaagcgccta gttgataaag gcaatgatta 3420 cttcattgag ttcgactgga cgcgttatga tggtaccatc cctaatgaag tctttaaggc 3480 tattaaggac tttagattct cgtgtcttag gggagacttg caaacaaaag aaaacagaga 3540 tgtctataat tggtattgtg agaacatatt tagaagatat gtgatgttac cttcaggaga 3600 agtgacaatc caggacaggg ggaacccctc tggacaaata tccacaacta tggataataa 3660 catctgtaat gtctttttcc aggcatttga gtttgcatat ctgaatactg aattggattc 3720 tgatgaattg aaggaaaatt gggataagta tgactcactt atctatggag atgacaggct 3780 aaccacaacc cctattttat gtgacaatta tgtggacaga gttattaaaa tgtatgctga 3840 tgtctttggg atgtgggtca agagagagaa agtaaaagtt tcaaatgaaa ttaatggatt 3900 gaccttttgt ggctttactg ttcaagagtc aaatggcctt tttgtcccca taccaactga 3960 tacagataaa ttacttgctg gcttaataac accaataaag aaattgcctg atattttgtc 4020 actctatggg aagctccttt gctaccgcat ccttggccat aacttgcctg atgaccataa 4080 atttaaaaat tatatcttgg tcgccttgga ggtagtggcc aggcacatcc gtgctagtgg 4140 tggggaagaa ccctattata tcacggatag catgctggat aggctttgga ggggaggtcc 4200 aaagcaaagt catggctggt aggcagcccc agcaggccct gcccaaggca gcggcaaagc 4260 aaatagccaa ggaggtagtc aaacaggaga agaaggaacc agtggtgcgt aaaaagaaac 4320 agttttatcc aaatccaaag tttaataata gatttaataa gaaatttgtg aaaaaacagc 4380 tagataaaaa tttgaagaaa caagggtttg aaggaccaaa acctagattt gctgtcaccg 4440 tctctgccac cattggcaag gtcgggccaa ataaaagtca gggacctgaa ctccaaatat 4500 ccactttcat gcatcccagc ttgatgaaag agccaaatga tggcacaaat tttggtcccc 4560 tacagtcagc agctgcacaa tggggtttgt ggcgcttgaa aaatttgagc gtcacgttta 4620 ctccccttgt tggtccatca gcagttaccg ggtctgtttt ccgcatatcc ctaaacatgg 4680 cacagtcacc tggagccacg tcatgggggg gtcttggtgc taggaagcac aaggatgttg 4740 ctgtgggaaa gcagttcact tggaagctac agaagggaga cctcacaggc cccagggaaa 4800 cctggtggct tacagacaca aatgaagagg gagcacaaag ttgtgggcct cttcttgaga 4860 tccatggcct tggtgaaaca acttctacat acaaggatgc agcatgggct ggagacctct 4920 tcattgttga ggtcaggggt cgctgggagt ttgcaaatta caacagcaaa cctgcattag 4980 gcatgttgga gagggtgact gaaactacca atgcttcaat tgaagtagct aatggcaata 5040 tgattatgac agttccacag aattcccagc ttgcaaggca tatgagtgaa aggttcgaga 5100 ggaccacaaa tgcaagtact gttggtgaaa caatatggca gattgtggat gagggtgctg 5160 gtttggttgc aaatgtcgca ccacccccgt tcacttggtt gatcaaaggg ggatggtggt 5220 ttgtcaagaa attactaggt agatcagcaa atactgatgt ccaatatcta gtttatgcat 5280 cattggcaga cgcccaaaac aatagacctg tagaggcaca aaattacaca aaagtcacac 5340 gacagacaac actttcttcc acgcaaatca atgcacctaa cacaggccct aacaccacta 5400 cagggtcaat tggaaataac aaccaacagt ggccgatacc tccgacaggg gtgccggttg 5460 gtgactttta tgtctgtggc aggatgacaa cattgcatat gggtggtcag tctggcattc 5520 aagccacgac tctagtgaat gggatgatat atcgtacaga ccacccagaa ccatcaacaa 5580 gcccagtttc caattgggaa ttcacagttt tggaaaacaa cacaattgtt ggtgctggaa 5640 tggggtgtgt gtggtttcag aaatccgaag cactagtgtg gacgctagat ggccagaagc 5700 tgtcaggatg gaacacacta gatggtgttg gtacaaccca attgacagtc gcctggagac 5760 agcataacag aacaatttat ggatgggcta atgttgttgc ttggaactct gaagaatggc 5820 atacaaatgc agaacaacca caccagccta tattgaggct gacatattgg ctagtaaaaa 5880 ttaatgtttt gtctgaacca gaagattttg atgttgtcca aaaatcccca ttagcttatt 5940 tagaagatta tactacagca caatcaaaat ctgccatcca aaagctcaac ttccaaacgt 6000 ttcagaaacc tgaaggggga ggcactttgc gggcacaata ctcaactact cccaggcaag 6060 gggattttgc cgtaatatgg cagattggta gacataattt tgacatgtct accggtaagg 6120 gtacaccagt tgaaagtttg agtgattatg tcatgcccca gcagaaagat gcccatattg 6180 gtatgtggta tcgtgcttta accagtgttg gaccaagatc agatgttttg acccttcatt 6240 tccacttgcc aactgtggaa aaagatttgg ttgagcagat cattgatcaa attcagcatc 6300 gctacagatt gaccccactg gattcggatt cagactcctc tagttctgat tccgatttcg 6360 agcctgaaga tagatttgag aagttaaaaa tctatgaggg tctcaggtcc agtggtctgt 6420 cacaccatgt atctgatggt gctgcgatag ctgtcaagaa aaaattgcgc cgaggccacg 6480 ccgagtagga tcgagggtac agcgctaaat tgattactag aggtgttaat caataaatca 6540 ttgatttggt gattgatatg atcaatttga aattgaaatt tccagc 6586 //