Dbfetch
ID FJ969835; SV 1; circular; genomic DNA; STD; VRL; 2841 BP. XX AC FJ969835; XX DT 19-MAR-2010 (Rel. 104, Created) DT 25-JUN-2014 (Rel. 121, Last updated, Version 2) XX DE Sweet potato leaf curl virus isolate RS2-[BR:Mac1], complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2841 RX DOI; 10.1016/j.virusres.2010.02.003. RX PUBMED; 20152869. RA Paprotka T., Boiteux L.S., Fonseca M.E., Resende R.O., Jeske H., RA Faria J.C., Ribeiro S.G.; RT "Genomic diversity of sweet potato geminiviruses in a Brazilian germplasm RT bank"; RL Virus Res. 149(2):224-233(2010). XX RN [2] RP 1-2841 RA Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H., RA Faria J.C., Ribeiro S.G.; RT ; RL Submitted (23-APR-2009) to the INSDC. RL LPP III, Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao RL Biologica, Brasilia, DF 70770-900, Brazil XX DR MD5; a3d8ff93be351cc93536a916af4cd7e4. XX FH Key Location/Qualifiers FH FT source 1..2841 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea batatas" FT /isolate="RS2-[BR:Mac1]" FT /mol_type="genomic DNA" FT /country="Brazil" FT /db_xref="taxon:100755" FT gene 189..470 FT /gene="V2" FT CDS 189..470 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:D4HSB3" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:D4HSB3" FT /protein_id="ACY79470.1" FT /translation="MLSVKYLQSILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAE FT ISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFKRRPDEEKEG" FT gene 295..1059 FT /gene="V1" FT CDS 295..1059 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:D4HSB4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D4HSB4" FT /protein_id="ACY79471.1" FT /translation="MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTTYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1075..1521) FT /gene="Ren" FT CDS complement(1075..1521) FT /codon_start=1 FT /gene="Ren" FT /product="REn" FT /note="replication enhancer protein; C3" FT /db_xref="GOA:D4HSC7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D4HSC7" FT /protein_id="ACY79472.1" FT /translation="MDSRTGESLSHAQTTRALEFDTNPMSVGRTAPFHLRIMYVHESTQ FT GRTILKFQLRVNYRERRQLGFQQIFHKIFLQFRIVTTRLTGAIHSWTGILERLKWRICN FT ELANLGFFSLVNLVFVVRYLPRVCSWIDEVDTVDCNDDVKILLY" FT gene complement(1226..1684) FT /gene="Trap" FT CDS complement(1226..1684) FT /codon_start=1 FT /gene="Trap" FT /product="TrAP" FT /note="trans-activating protein; C2" FT /db_xref="GOA:D4HSC8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D4HSC8" FT /protein_id="ACY79473.1" FT /translation="MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSA FT FITTTCKYQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTVPSQNYVCPREHTGENHP FT QIPAEGQLQGKEATGIPTDLPQDLPPIPDRDDPSNWCYSQLDWYFGTP" FT gene complement(1593..2687) FT /gene="Rep" FT CDS complement(1593..2687) FT /codon_start=1 FT /gene="Rep" FT /product="Rep" FT /note="replication-associated protein; C1" FT /db_xref="GOA:D4HSC9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D4HSC9" FT /protein_id="ACY79474.1" FT /translation="MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPTNKKYIH FT VARELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPNRSNHFHPNIQGAKSSSDVKSYV FT DKDGDTITWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIKEKLPEKYLFQFH FT NLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGP FT SRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDW FT QSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPF FT WVQEEVSHSGATAHRGEEGQEESS" FT gene complement(2273..2530) FT /gene="C4" FT CDS complement(2273..2530) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D4HSC4" FT /protein_id="ACY79475.1" FT /translation="MGNLTSMCWCSSKANSSAQIADSSIWSHRTDRITFTPTSRELNPR FT PMSSPTLTRTGIPSPGVNSRSTADLLEEASRLLMTQPQRL" XX SQ Sequence 2841 BP; 742 A; 604 C; 689 G; 806 T; 0 other; accggtgccc gccgcgccct tttaaagtgg gccccacaat gggaccacgc gtctttgccg 60 tactgtcttt aatgattact ttgctttata aggaccaatc aggtttccgt gcttgggcgc 120 caagaatgga gcagttgtgg gaccctttgc agaacccact cccggatact ttatacggtt 180 ttaggtgtat gctatccgta aaatacttgc agagtatttt gaagaaatac gagccaggaa 240 ccttagggtt cgagctctgt tctgagttaa tccgtatatt cagggtcagg cagtatgaca 300 gggcgaattc ccgtttcgcg gagatttcat ccatatgggg ggagaccggt aagacggagg 360 ctgaacttcg agacagctat cgtgccctac actgggaatg ctgtcccaat tgctgcccga 420 agctatgtcc cggtttcaag aggcgtccgg atgaagagaa ggaggggtga ccgcatcccg 480 aagggatgtg tcggtccctg taaggtccag gactatgagt tcaagatgga cgttccccac 540 acgggaacgt ttgtctgtgt ctcggatttt actaggggaa ctgggcttac ccatcgcctg 600 ggtaagcgtg tttgtgtgaa gtccatgggt atagatggta aggtctggat ggatgacaat 660 gtggccaaga gagatcacac caatatcatc acgtattggc tgattcgtga caggaggccc 720 aataaggatc cgcttaactt tggccagatc ttcacgacgt acgacaatga gcccactact 780 gctaagatcc gaatggatct gagagataga atgcaggtct tgaagaagtt ctcggttaca 840 gtttcaggag gtccatacag ccacaaggag caggccttaa ttaggaagtt ttttaagggt 900 ttgtataatc atgtaactta caatcacaag gaagaagcta agtatgagaa tcaattagag 960 aatgcactta tgttgtatag tgctagtagt catgctagta atcccgtgta tcagaccctg 1020 cgttgcaggg cttatttcta tgattcgcac aataattaat aaaattatat tttattaata 1080 gagtaatatc tttacatcat cattacaatc tacagtatct acttcatcta tccaagaaca 1140 tactcttgga agatatctaa caacgaaaac taaattaact aaactaaaaa atcctaaatt 1200 tgctaattca ttacatatac gccatttaag gcgttccaaa ataccagtcc aactgtgaat 1260 agcaccagtt agacgggtcg tcacgatccg gaattggagg aagatcttgt ggaagatctg 1320 ttggaatccc agttgcctcc tttccctgta gttgaccctc agctggaatt tgaggatggt 1380 tctcccctgt gtgctctcgt ggacatacat aattctgaga tggaacggtg cagtccgacc 1440 cacagacatg gggttggtgt cgaattctag tgctctcgta gtctgagcat gacttagtga 1500 ttcccctgtg cgtgaatcca tgctggtact tgcaggttgt ggtgatgaag gctgaacagc 1560 cgcaaccctt ccacactatc ctcgtcctct gttcaggaac tttcctcttg gccttcttcg 1620 cctctgtgtg cagtggctcc tgaatgggac acttcctctt gtacccagaa aggggattgg 1680 acatcgcaga atatagcgtt tgctgttgcc caatttttga gtgctccttg ctctggtttg 1740 tccaaccaga gtttaaatga ggagccctct cctggattgc agaggaagat agtgggaatt 1800 ccacctttaa tttgaactgg ctttccgtat ttacagttgg attgccagtc cttctgggcc 1860 cccatgaatt ccttaaagtg ctttaggtat tgggggttga cgtcatcaat gacgttatac 1920 caagcactgt tgctgtatac tttagggctt agatctaaat gcccacacaa ataattatga 1980 ggccccaaag acctggccca tactgttttg cctattctgc ttgggccttc aataacaatg 2040 gatatgggtc tatccggccg cgcagcggaa tccatgacat tttcagcggc ccagtcgctg 2100 ataatgtcag gaacggcatt gaaagaagaa gatgaaaaag gagaagaata tacagaagga 2160 ggaggagaaa aaatcctatc taaattacta actaaattgt gaaattgaaa caaatatttt 2220 tcaggaagtt tctccttaat tatttgcaac gcagcttctt tagaacctgc gtttagagcc 2280 tctgcggctg cgtcattagc agtctgctgg cctcctctag cagatctgcc gtcgacctgg 2340 aattcacccc aggtgatggt atccccgtcc ttgtcaacgt aggacttgac atcggacgag 2400 gatttagctc cctggatgtt ggggtgaaag tgattcgatc tgttcggtga gaccagatcg 2460 aagaatctgc tatttgtgca gacgaatttg ccttcgaact gcaccagcac atggaggtga 2520 ggttccccat cctcgtgcag ttctcttgct acgtgtatgt attttttgtt ggtgggtgtt 2580 tggatattta ggagttgggc taggcagtcc tcttttgaga gagaacagcg tggataagta 2640 ataaaataat ttttggcctg aattttaaaa cgttttggag gagccatttg gagacacgca 2700 taagttcaaa tgaattggag actggagaca atatatagta tgtctccaaa tggcattctg 2760 gtaatttaga agatcctttt agctttaatt caaattccga caactctggg tccaccaaaa 2820 ggcgggcacc gtattaatat t 2841 //