Dbfetch
ID FJ969832; SV 1; circular; genomic DNA; STD; VRL; 2841 BP. XX AC FJ969832; XX DT 19-MAR-2010 (Rel. 104, Created) DT 25-JUN-2014 (Rel. 121, Last updated, Version 2) XX DE Sweet potato leaf curl virus isolate CE-[BR:For1], complete genome. XX KW . XX OS Sweet potato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2841 RX DOI; 10.1016/j.virusres.2010.02.003. RX PUBMED; 20152869. RA Paprotka T., Boiteux L.S., Fonseca M.E., Resende R.O., Jeske H., RA Faria J.C., Ribeiro S.G.; RT "Genomic diversity of sweet potato geminiviruses in a Brazilian germplasm RT bank"; RL Virus Res. 149(2):224-233(2010). XX RN [2] RP 1-2841 RA Paprotka T., Boiteux L.S., Fonseca M.E.N., Resende R.O., Jeske H., RA Faria J.C., Ribeiro S.G.; RT ; RL Submitted (22-APR-2009) to the INSDC. RL LPP III, Embrapa Recursos Geneticos e Biotecnologia, Parque Estacao RL Biologica, Brasilia, DF 70770-900, Brazil XX DR MD5; 296cf8871e4b0636296d3ee1b613b64c. XX FH Key Location/Qualifiers FH FT source 1..2841 FT /organism="Sweet potato leaf curl virus" FT /host="Ipomoea batatas" FT /isolate="CE-[BR:For1]" FT /mol_type="genomic DNA" FT /country="Brazil" FT /db_xref="taxon:100755" FT gene 186..467 FT /gene="V2" FT CDS 186..467 FT /codon_start=1 FT /gene="V2" FT /product="V2" FT /db_xref="GOA:D4HSA7" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:D4HSA7" FT /protein_id="ACY79452.1" FT /translation="MLSVKYLQGILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAE FT ISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFKRRPDEEKEG" FT gene 292..1056 FT /gene="V1" FT CDS 292..1056 FT /codon_start=1 FT /gene="V1" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:D4HSA8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:D4HSA8" FT /protein_id="ACY79453.1" FT /translation="MTGRIRVSPRFHPYGGRQVRRRLNFETAIVPYTGNAVPIAARSYV FT PVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGK FT RVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTVYDNEPTTA FT KIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLE FT NALMLYSASSHASNPVYQTLRCRAYFYDSHNN" FT gene complement(1072..1506) FT /gene="Ren" FT CDS complement(1072..1506) FT /codon_start=1 FT /gene="Ren" FT /product="REn" FT /note="replication enhancer protein; C3" FT /db_xref="GOA:D4HSA9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:D4HSA9" FT /protein_id="ACY79454.1" FT /translation="MDSRTGESLSRAQTTRALEFDTNPMSAGRTAPFHLRMMYVHESTQ FT GRTILKFQLRVNYKERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELAN FT LGFLSLVNLVFVIRYLPRVCSWIDEVDTVDCNDDVKILLY" FT gene complement(1223..1669) FT /gene="Trap" FT CDS complement(1223..1669) FT /codon_start=1 FT /gene="Trap" FT /product="TrAP" FT /note="trans-activating protein; C2" FT /db_xref="GOA:D4HSB0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D4HSB0" FT /protein_id="ACY79455.1" FT /translation="MSNLPSGIKRKCPIQEPLHAEAKKAKRKVPETRTRIVWKGCGCSA FT FITQTCKFQHGFTHRGITKSCSDYESTRIRHQPHVCGSDCTIPSQNDVCPREHTGENHP FT QIPAEGQLQGKEAAGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP" FT gene complement(1578..2675) FT /gene="Rep" FT CDS complement(1578..2675) FT /codon_start=1 FT /gene="Rep" FT /product="Rep" FT /note="replication-associated protein; C1" FT /db_xref="GOA:D4HSB1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D4HSB1" FT /protein_id="ACY79456.1" FT /translation="MPTLPRSFKINAKNYFLTYPKCSLSKEEALTQLQNLNTPVNKKFI FT KICRELHEDGEPHLHVLLQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGQQTANDAYAQALNTGSKEAALNVIKELCPKDFVLQF FT HNINSNLDRIFSPPPSVYSSPFSSSSYNAVPDIISDWAAENVMDSAARPDRPISIVIEG FT PSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKD FT WQSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSP FT FWNQEEVSHSGATTRRGEEGQEESS" FT gene complement(2258..2515) FT /gene="C4" FT CDS complement(2258..2515) FT /codon_start=1 FT /gene="C4" FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D4HSB2" FT /protein_id="ACY79457.1" FT /translation="MGNLISMCYSSSKASSNARIRDSSTWYLQPGQHISIRTYRELNPA FT PTSSPTSIRMEIRSSGESSRSTADLLEEASRQLMTLTHRP" XX SQ Sequence 2841 BP; 737 A; 597 C; 685 G; 822 T; 0 other; accggtgccc gccgcgccct ttaaaagtgg gccccacaag ggaccacgcg cattccgtac 60 ttgctttaat gatgactttg ctttataagg accaatcagg tttccaccct tggcgcccaa 120 gtatggctga attgtgggac cctttgcaga acccactacc agatacttta tacggtttta 180 ggtgtatgct atctgtaaaa tacctgcagg gtattctgaa gaaatacgag ccaggaaccc 240 tagggttcga gctctgttcg gagttaatcc gcatcttcag ggtcaggcag tatgacaggg 300 cgaattcgcg tttcgccgag atttcatcca tatgggggga gacaggtaag acggaggctg 360 aacttcgaga cagctatcgt gccctacact gggaatgctg tcccaattgc tgcccgaagc 420 tatgtcccgg tttcaagagg cgtccggatg aagagaagga ggggtgaccg catcccgaag 480 ggatgtgttg gtccctgtaa ggtccaggac tatgagttca agatggacgt tccccacacg 540 ggaacgtttg tctgtgtctc ggattttaca aggggtactg ggcttactca tcgcctgggt 600 aagcgtgttt gtgtgaagtc catgggtata gatgggaagg tctggatgga tgataatgtg 660 gccaagagag atcacaccaa tatcatcacg tattggttga ttcgtgacag aaggcccaat 720 aaggatccgc tgaactttgg ccagatcttc accgtgtacg acaatgagcc cactactgct 780 aagatccgaa tggatctgag ggatagaatg caggtcttga agaagttttc tgttacagtt 840 tcaggaggtc catacagcca caaggagcag gcattaatta ggaagttttt taagggtttg 900 tataatcatg ttacttacaa tcacaaggaa gaagctaagt atgagaatca attagagaat 960 gcacttatgc tgtatagtgc tagtagtcat gctagtaatc ctgtgtatca gaccctgcgt 1020 tgcagggctt atttctatga ttcgcacaat aattaataaa attatattta attaatatag 1080 taatatcttt acatcatcat tacaatctac agtatctact tcatctatcc aagaacatac 1140 tcttggaaga tatctaataa caaaaactaa gttaactaaa ctaagaaaac ctaaatttgc 1200 taattcatta cagatgcgcc atttaaggcg ttccaaaata ccagtccaac tgtgaatagc 1260 accagttaga cgggtcgtca agatccggaa ttggaggaag atcttgtgga atcccagctg 1320 cctcctttcc ttgtagttga ccctcagctg gaatttgagg atggttctcc cctgtgtgct 1380 ctcgtggaca tacatcattc tgagatggaa tggtgcagtc cgacccgcag acatggggtt 1440 ggtgtcgaat tctagtgctc tcgtagtctg agcacgactt agtgattccc ctgtgcgtga 1500 atccatgctg gaatttgcag gtttgggtta tgaaggctga acagccgcag cccttccaca 1560 ctatcctcgt ccttgtttca ggaactttcc tcttggcctt cttcgcctct gcgtgtagtg 1620 gctcctgaat gggacacttc ctcttgattc cagaagggag attggacatc gcagaatata 1680 gcgtttgctg ttgcccaatt cttgagtgct ccttgttctg gtttgtctaa ccagagttta 1740 aatgaggagc cctctcctgg attgcagagg aagatagtgg gaattccacc tttaatttga 1800 actggctttc cgtatttaca gtttgattgc cagtccttct gggcccccat gaattcctta 1860 aagtgcttta agtattgggg gttgacgtca tcaatgacgt tataccaagc actgttgctg 1920 tacactttag ggcttagatc taaatgccca cacaaataat tgtgagggcc caaagacctg 1980 gcccatactg ttttgcctat tctgcttggg ccttcaataa caatggatat gggtctatcc 2040 ggccgcgcag cggaatccat gacattttca gcggcccagt cgctgataat gtcaggaacg 2100 gcgttgtaag aagaagaaga aaaaggagaa gaatatacag aaggaggagg agaaaaaatc 2160 ctatctaaat tcgaattaat attatggaat tgtagaacaa aatcctttgg acacaattcc 2220 ttaattacgt ttaaggcagc ttctttgctg cctgtgttta aggcctgtgc gtaagcgtca 2280 ttagctgtct gctggcctcc tctagcagat ctgccgtcga tctggaactc tccccactcg 2340 atcgtatctc catccttatc gacgtaggac ttgacgtcgg agctggattt agctccctgt 2400 atgttcggat ggaaatgtgc tgacctggtt ggagatacca ggtcgaagaa tctctgattc 2460 ttgcattgga acttgccttc gaactggagt agcacatgga gatgaggttc cccatcctcg 2520 tgcagttctc tgcaaatttt aataaatttt ttgttaactg gagtgttaag gttttgtaat 2580 tgggttagtg cctcttcctt agatagagag cactttggat aagtgaggaa gtagttcttc 2640 gcatttatct taaatgagcg gggtaatgtc ggcatttttg aaaaatgaat tggggtctct 2700 caaagctcta tgggtatcgg tgtattgggg tcttatttat agtcagactc caaatggcat 2760 tttggtaatt agaattctaa tttgaaattc aaattccgac aactattggt ccacccaaaa 2820 ggcgggcacc gtattaatat t 2841 //