ID FJ956703; SV 1; circular; genomic DNA; STD; VRL; 2755 BP. XX AC FJ956703; XX DT 27-SEP-2010 (Rel. 106, Created) DT 09-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Tomato yellow leaf curl virus isolate Alb23, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2755 RA Idris A.M., Brown J.K.; RT "A novel recombinant species of begomovirus is associated with tomato leaf RT curl disease in Oman: molecular characterization and infectivity analysis"; RL J. Gen. Virol. 0:0(2010). XX RN [2] RP 1-2755 RX DOI; 10.1099/vir.0.025288-0. RX PUBMED; 21084498. RA Idris A.M., Shahid M.S., Briddon R.W., Khan A.J., Zhu J.K., Brown J.K.; RT "An unusual alphasatellite associated with monopartite begomoviruses RT attenuates symptoms and reduces betasatellite accumulation"; RL J. Gen. Virol. 92(Pt 3):706-717(2011). XX RN [3] RP 1-2755 RA Idris A.M., Brown J.K.; RT ; RL Submitted (22-APR-2009) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; cf1fc5a1c3a901fe1f2b8b07d0d23b6f. DR EuropePMC; PMC3970147; 24625811. XX FH Key Location/Qualifiers FH FT source 1..2755 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum L. (tomato)" FT /isolate="Alb23" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="2005" FT /db_xref="taxon:10832" FT CDS 132..482 FT /codon_start=1 FT /product="V2" FT /note="precoat" FT /db_xref="GOA:E1U838" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E1U838" FT /protein_id="ADC79167.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKP" FT CDS 292..1068 FT /codon_start=1 FT /product="V1" FT /note="Coat protein" FT /db_xref="GOA:E1U839" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E1U839" FT /protein_id="ADC79168.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVIRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1065..1469) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:E1U840" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E1U840" FT /protein_id="ADC79172.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKVLGIHKCYLNFQIWTTLRPQTGRFLRVFRYQVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTESHDIKYKIY" FT CDS complement(1210..1617) FT /codon_start=1 FT /product="C2" FT /note="TrAP" FT /db_xref="GOA:E1U841" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E1U841" FT /protein_id="ADC79171.1" FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKPVRRKRIDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPIFQDHQPRREAISNEPRHHFNTDKIQSQ FT YQEGTGDSQMLSQLPNLDDLTASDWSFLKSI" FT CDS complement(1541..2605) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:E1U842" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E1U842" FT /protein_id="ADC79169.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNIQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILKEKAPRDFILQFH FT NLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FSSANQNPTPHSED" FT CDS complement(2155..2430) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E1U843" FT /protein_id="ADC79170.1" FT /translation="MCSSSSKESSSAKTTDSSTSHPQPGQHISIRTFRELRVQAMSNPI FT WKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2755 BP; 742 A; 534 C; 617 G; 862 T; 0 other; accggatggc cgcgcgcccc acgtgggtcc cacacacgtc gctatcatcc aatcaaattg 60 atgactgaaa cgttagataa ttgtttattt gtctttataa acttagtccc ccaagtttgt 120 tgtcttgcaa tatgtgggat ccacttctta atgaatttcc tgaatccgtt cacggatttc 180 gttgtatgtt agctattaaa tatttgcagg ctgttgagga aacttacgag cccaatacat 240 tgggccacga tttaattagg gatcttatat ctgttgtaag ggcccgtgac tatgtcgaag 300 cgaccaggcg atataatcat ttccacgccc gtctcgaagg ttcgccgaag gctgaacttc 360 gacagcccat acagcagccg tgctgctgtc cccattgtcc aaggcacaaa caagcgacga 420 tcatggacgt acaggcccat gtaccgaaag cccagaatat acagaatgta tcgaagccct 480 gatgttcccc gtggatgtga aggcccatgt aaagtccagt cttatgagca acgggatgat 540 attaagcata ctggtattgt tcgttgtgtt agtgatgtta ctcgtggatc tggaattact 600 cacagagtgg gtaagaggtt ctgtgttaaa tcgatatatt ttttaggtaa agtctggatg 660 gatgaaaata tcaagaagca gaatcacact aatcaggtca tgttcttctt ggtccgtgat 720 agaaggcctt atggaagcag cccaatggat tttggacagg tttttaatat gttcgataat 780 gagcccagta ccgcaaccgt gaagaatgat ttgcgggata ggtttcaagt gataaggaaa 840 tttcatgcta cagttattgg tgggccctct ggaatgaagg aacaggcatt agttaagaga 900 ttttttagaa ttaacagtca tgtaacttat aatcatcagg aggcagccaa gtatgagaac 960 catactgaga acgccttgtt attgtatatg gcatgtacgc atgcctctaa tccagtgtat 1020 gcaactatga aaatacgcat ctatttctat gattcaatat caaattaata aattttatat 1080 tttatatcat gactttctgt tacatttatt gtgttttcaa gtacatcata caatacatga 1140 tcaactgctc tgattacatt gttaatggaa attacaccaa gactatctaa atacttaaga 1200 acttgatatc taaatactct taagaaacga ccagtctgag gccgtaaggt cgtccagatt 1260 tggaagttga gataacattt gtgaatcccc agtaccttcc tgatattgtg attgaatctt 1320 atctgtattg aaatgatgtc gtggctcatt agaaatggcc tctcgtcgtg gttggtgatc 1380 ttgaaatata ggggattttc tatctcccat ataaaaacgc cattctgggc ttgatgagca 1440 gtgatgagtt ccccggtgcg tgaatccatg attgatgcag ttgatgtgga ggtaatatga 1500 gcatccgcag tcgaggtcta tgcgcttacg tctgactggc ttagtcttcg ctatgcggtg 1560 ttggattttg attggcactt gagaacagtg gctcgtagag ggtgacgaag gttgcattct 1620 tgagagccca atttttcaag gatatgtttt tttcttcgtc tagatattcc ctatatgatg 1680 aggtaggtcc tggattgcag aggaagatag tgggaattcc ccctttaatt tgaatcggct 1740 tcccgtactt tgtgttgctt tgccagtccc tctgggcccc catgaattcc ttgaagtgct 1800 ttaaataatg cgggtctacg tcatcgatga cgttgtacca cgcatcatta ctgtacacct 1860 ttggacttag gtctagatgt ccacataaat aattatgtgg gcctagagac ctggcccaca 1920 ttgtcttccc cgttctgcta tcaccctcga tgacaatact attaggtctc catggccgcg 1980 cagcggaaga catgacgttc tcggacaccc atacttcaag ttcatctgga acttgattaa 2040 aagatgaaga taaaaaggga gaaatataag gagccggagg ctcctgaaaa attctatcta 2100 aatttgaatt taaattatga aattgaagta taaagtctct aggagctttc tccttcagta 2160 tattgagggc ctgagctttg gaccctgaat tgattgcctc ggcatatgcg tcgttggcag 2220 attggcaacc tcctctagct gatcgtccat cgacttggaa aactccatga tcaatgacgt 2280 ctccgtcttt ttccatatag gatttgacat cgcttgaact cttagctccc tgaatgttcg 2340 gatggaaatg tgctgacctg gttggggatg tgaggtcgaa gaatctgttg tttttgcact 2400 ggaactttcc ttcgaactgg atgagcacat gcaagtgagg agtcccatct tcatgaagct 2460 ctctgcagat tctaatgaat tttttggaag tgggtgtttg tatatttaat aattgggaaa 2520 gtgcttcctc tttagttaga gagcatttgg gataagtgag aaaataattt ttggcattta 2580 ttttaaaccg attgggggct gccatattga cttggtcaat cggagtctct caactctttc 2640 tatgtattgg tgtattggag tcctatatat atggagactc caatggcata tatgtaaata 2700 ttgtacttta attcaaaatt ctcacgctcc aaaaagcggc catccgtata atatt 2755 //