ID FJ956702; SV 1; circular; genomic DNA; STD; VRL; 2765 BP. XX AC FJ956702; XX DT 27-SEP-2010 (Rel. 106, Created) DT 09-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Tomato yellow leaf curl virus isolate Alb13, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2765 RA Idris A.M., Brown J.K.; RT "A novel recombinant species of begomovirus is associated with tomato leaf RT curl disease in Oman: molecular characterization and infectivity analysis"; RL J. Gen. Virol. 0:0(2010). XX RN [2] RP 1-2765 RX DOI; 10.1099/vir.0.025288-0. RX PUBMED; 21084498. RA Idris A.M., Shahid M.S., Briddon R.W., Khan A.J., Zhu J.K., Brown J.K.; RT "An unusual alphasatellite associated with monopartite begomoviruses RT attenuates symptoms and reduces betasatellite accumulation"; RL J. Gen. Virol. 92(Pt 3):706-717(2011). XX RN [3] RP 1-2765 RA Idris A.M., Brown J.K.; RT ; RL Submitted (22-APR-2009) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; 81973a96698851957b78aa3b8efb490b. DR EuropePMC; PMC6146701; 29950424. XX FH Key Location/Qualifiers FH FT source 1..2765 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum L. (tomato)" FT /isolate="Alb13" FT /mol_type="genomic DNA" FT /country="Oman" FT /collection_date="2005" FT /db_xref="taxon:10832" FT CDS 131..481 FT /codon_start=1 FT /product="V2" FT /note="precoat" FT /db_xref="GOA:B4YT03" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B4YT03" FT /protein_id="ADC79161.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPLQQPCCCPHCPRHKQAPIMDVQAHV FT PKAQNIQNVSKP" FT CDS 291..1067 FT /codon_start=1 FT /product="V1" FT /note="Coat protein" FT /db_xref="GOA:E1U833" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E1U833" FT /protein_id="ADC79162.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAAPIVQGINKRRSW FT TYRPMYRKPRIYRMYRSPDVLRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1064..1468) FT /codon_start=1 FT /product="C3" FT /note="REn" FT /db_xref="GOA:E1U828" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E1U828" FT /protein_id="ADC79166.1" FT /translation="MDSRTGELITAHQAQNGVFIWEIENPLYFKITNHDERPFLMSHDI FT ISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRYQVLKYLDNLGVISINN FT VIRAVDHVLYDVLENTINVTESHDIKYKFY" FT CDS complement(1209..1616) FT /codon_start=1 FT /product="C2" FT /note="TrAP" FT /db_xref="GOA:E1U829" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E1U829" FT /protein_id="ADC79165.1" FT /translation="MQPSSPSTSHCSQVPIKIQHRIAKTKPVRRKRIDLDCGCSYYLHI FT NCINHGFTHRGTHHCSSSPEWRFYMGDRKSPVFQDHQPRREAISNEPRHHFNTDKIQSQ FT HQEGTGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1540..2604) FT /codon_start=1 FT /product="C1" FT /note="Rep" FT /db_xref="GOA:E1U830" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E1U830" FT /protein_id="ADC79163.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKKEALSQLLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPNSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVNPHYLKHFKELMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPL FT FSSANQNPTPHSED" FT CDS complement(2154..2429) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E1U831" FT /protein_id="ADC79164.1" FT /translation="MFSSNSKESSSARTIDSSTSPPQPGQHISIRTFRELKAQAMSKPT FT WRKTETSLIMEFSRSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2765 BP; 742 A; 530 C; 625 G; 868 T; 0 other; accggatggc cgcgcgcccc acgtgggtcc cacacacgtc gctatcatcc aatcaaattg 60 atgactgaaa cgttagataa ttgtttattt gtctttataa acttagtccc caagtttgtt 120 gtcttgcaat atgtgggatc cacttcttaa tgaatttcct gaatccgttc acggatttcg 180 ttgtatgtta gctattaaat atttgcaggc cgttgaggaa acgtatgagc ccaacacttt 240 gggccacgat ttaattaggg atcttatatc tgttgtaagg gctcgtgact atgtcgaagc 300 gacccggcga tataatcatt tccacgcccg tctcgaaggt tcgccgaagg ctgaacttcg 360 acagccccta cagcagccgt gctgctgccc ccattgtcca aggcataaac aagcgccgat 420 catggacgta caggcccatg taccgaaagc ccagaatata cagaatgtat cgaagccctg 480 atgttctccg tggatgtgaa ggcccatgta aagtccagtc ttatgagcaa cgggatgata 540 ttaagcatac tggtattgtt cgttgtgtta gtgatgttac tcgtggatcc ggaattaccc 600 acagagtggg taagaggttc tgtgttaaat ccatatattt tttaggtaaa gtttggatgg 660 atgaaaatat caagaagcag aatcacacta atcaggtcat gttcttcttg gtccgtgata 720 gaaggcccta tggaaacagc ccaatggatt ttgggcaggt ttttaatatg ttcgataatg 780 agcctagtac cgcaaccgtg aagaatgatc tccgggatag gtttcaagtg atgaggaaat 840 ttcatgctac agttattggt gggccctctg gaatgaagga acaggcatta gttaagagat 900 tttttagaat taacagtcat gtaacttata atcatcagga ggcagccaag tatgagaatc 960 atactgagaa tgctttgttg ttgtatatgg catgtactca tgcctctaat ccagtgtatg 1020 caactatgaa aatacgcatc tatttctatg attcaatatc aaattaataa aatttatatt 1080 ttatatcatg actttcggtt acatttattg tgttttcaag tacatcatat aatacatgat 1140 caactgctct gattacattg ttaatggaaa ttacaccaag attatctaaa tacttaagaa 1200 cttgatatct aaatactctt aagaaacgac cagtctgagg ctgtaatgtc gtccaaattc 1260 ggaagttgag aaaacatttg tgaatcccca gtaccttcct gatgttgtga ttgaatctta 1320 tctgtattga aatgatgtcg tggctcatta gaaatggcct ctcgtcgtgg ttggtgatct 1380 tgaaatacag gggattttcg atctcccata taaaaacgcc attctgggct tgatgagcag 1440 tgatgagttc ccctgtgcgt gaatccatga ttgatgcagt tgatgtggag gtaatatgag 1500 catccgcagt cgaggtctat gcgctttcgt ctgactggct tagtcttcgc tatgcggtgt 1560 tggattttga ttggcacttg agaacagtgg ctcgtagagg gtgacgaagg ttgcattctt 1620 gagagcccaa ttttttaagg atatgttttt ttcttcgtct agatattccc tatatgagga 1680 ggtaggtcct ggattgcaga gaaagatagt gggaattccc cctttaattt gaatgggttt 1740 cccgtatttt gtgttgcttt gccagtccct ctgggccccc attaattcct tgaagtgctt 1800 taaataatgc gggtttacgt catcaatgac gttaaaccac gcatcattac tgtatacctt 1860 tggacttagg tctagatgtc cacataaata attatgtggg cctagagacc tggcccacat 1920 tgttttgcct gttctgctat caccctcgat gacaatacta ttaggtctcc atggccgcgc 1980 agcggaagac atgacgttct ccgacaccca tacttctagt tcctctggaa cttgattaaa 2040 agatgaagat aaaaagggag aaatataagg agccggaggc tcctgaaaat acctatctaa 2100 attactattt aaattatgaa attggagtag aaagtctctt ggggctttct ccttcagtat 2160 attgagggcc tgagctttgg accctgcgtt gattgcctcg gcatatgcgt cgttggcaga 2220 ttggcaacct cctctagctg atcttccatc gacctggaaa actccatgat caaggatgtc 2280 tccgtctttc tccatgtagg ttttgacatc gcttgagctt ttagctccct gaatgttcgg 2340 atggaaatgt gctgacctgg ttggggaggt gaggtcgaag aatctattgt tcttgcactg 2400 gaactttcct tcgaattgga tgagaacatg caagtgagga gtcccatctt cgtgaagctc 2460 tctgcagatt ctaatgaatt ttttggaagt gggtgtttgg agatttaata attgggaaag 2520 tgcttccttt ttagtaagag agcacttggg atatgtgaga aaataatttt tggcatttat 2580 tttaaaccga ttgggggctg ccatgctgac ttagtcaatc ggtgtctcgc aatttgctct 2640 atgtatcggt gtactggagt cctatatata tggagactcc aatggcataa ttgtaatttc 2700 gtaaaagcat ttttaaaagt aaaattcaaa aatcaaaatc ctaaagcggc catccatata 2760 atatt 2765 //