ID FJ952384; SV 1; linear; genomic RNA; STD; VRL; 3189 BP. XX AC FJ952384; XX DT 05-JUN-2009 (Rel. 101, Created) DT 29-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Lujo virus segment S glycoprotein precursor and nucleocapsid protein genes, DE complete cds. XX KW . XX OS Mammarenavirus lujoense OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Arenaviridae; Mammarenavirus. XX RN [1] RC Publication Status: Online-Only RP 1-3189 RX DOI; 10.1371/journal.ppat.1000455. RX PUBMED; 19478873. RA Briese T., Paweska J.T., McMullan L.K., Hutchison S.K., Street C., RA Palacios G., Khristova M.L., Weyer J., Swanepoel R., Egholm M., RA Nichol S.T., Lipkin W.I.; RT "Genetic detection and characterization of Lujo virus, a new hemorrhagic RT fever-associated arenavirus from southern Africa"; RL PLoS Pathog. 5(5):E1000455-E1000455(2009). XX RN [2] RP 1-3189 RA Briese T., Lipkin W.I.; RT ; RL Submitted (22-APR-2009) to the INSDC. RL Center for Infection and Immunity, MSPH, Columbia University, 722 West, RL 168th Street, New York, NY 10032, USA XX DR MD5; 93d4606b4aa758ca9029aeffb735aa25. DR EuropePMC; PMC2680969; 19478873. DR EuropePMC; PMC3053032; 21056893. DR EuropePMC; PMC3310648; 22000372. DR EuropePMC; PMC3848435; 24011402. DR EuropePMC; PMC4054455; 24741091. DR EuropePMC; PMC6322784; 30576397. XX FH Key Location/Qualifiers FH FT source 1..3189 FT /organism="Mammarenavirus lujoense" FT /segment="S" FT /host="Homo sapiens" FT /mol_type="genomic RNA" FT /country="South Africa:Zambia" FT /collection_date="Oct-2008" FT /db_xref="taxon:3052314" FT CDS 8..1372 FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="GPC" FT /db_xref="GOA:C5ILC1" FT /db_xref="InterPro:IPR001535" FT /db_xref="PDB:6GH8" FT /db_xref="UniProtKB/TrEMBL:C5ILC1" FT /protein_id="ACR56359.1" FT /translation="MGQIVAVFQAIPEILNEAINIVIIVIIMFTLIKGVFNLYKSGLFQ FT LVIFLLLCGKRCDSSLLSGFNLETVHFNMSLLSSIPMVSEQQHCIQHNHSSITFSLLTN FT KSDLEKCNFTRLQAVDRVIFDLFREFHHRVGDFPVTSDLKCSHNTSYRVIEYEVTKESL FT PRLQEAVSTLFPDLHLSEDRFLQIQAHDDKNCTGLHPLNYLRLLKENSETHYKVRKLMK FT LFQWSLSDETGSPLPGGHCLERWLIFASDIKCFDNAAIAKCNKEHDEEFCDMLRLFDYN FT KASIAKLRGEASSSINLLSGRINAIISDTLLMRSSLKRLMGIPYCNYTKFWYLNHTKLG FT IHSLPRCWLVSNGSYLNETKFTHDMEDEADKLLTEMLKKEYVRRQEKTPITLMDILMFS FT VSFYMFSVTLCICNIPTHRHITGLPCPKPHRLRKNGTCACGFFKSINRSTGWAKH" FT CDS complement(1444..3120) FT /codon_start=1 FT /product="nucleocapsid protein" FT /note="NP" FT /db_xref="GOA:C5ILC2" FT /db_xref="InterPro:IPR035083" FT /db_xref="InterPro:IPR035084" FT /db_xref="InterPro:IPR038115" FT /db_xref="UniProtKB/TrEMBL:C5ILC2" FT /protein_id="ACR56360.1" FT /translation="MSQSKEVKSFLWLQTLRRELSPFCTDVRAKVVKDAVSLINGLDFS FT MVSDVQRLMRKDKRNDEDLMKLRELNQTVDGLVDLKSSNKKNRVGVGKLTSDELMILAT FT DLEKLKKKVTRTEARGPGVYRGNLSQDQLGRRSELLNMIGMGTPRPTRNTVVRVWDVKD FT SSLLNNQFGTMPSLTLACLTRQTRVDLNDSVQACVDLGLIYTAKFPNMDDLDKLKNKHP FT VLDYVSNCDSAINISGYNLSLASLVKAGASLMKGGDMLETIELNSRNIDDVIKATLTAR FT NKVQMFVSEVPGERNPYENLLYKICLSGEGWPYISSRTSIKGRSWDNTVIDMTPKDPTP FT PQNERAKAPHQFPVGVSFSQSQLLDDIMKNLNPKGRTWMDIEGRPDDPVEIAIFQPEER FT LCLHFYREPTDQKQFKNDSKYCHGMDFTQLCSTQPGLTTAVLERLPLGMVITCQGKDDI FT EKLLHSQGRRDVKFIDIQMSKEASRKFEDQVWDSYKTFCNQHTGIVVTKSKKGKKEITP FT HCALMDCIMYESAVNGQLYQEPIRNLLPADMIFRTAAKLSL" XX SQ Sequence 3189 BP; 812 A; 756 C; 694 G; 927 T; 0 other; agcttggatg gggcagattg ttgccgtttt ccaagctatc cctgagattc taaacgaggc 60 aattaacatt gtgataattg tgatcataat gttcaccctc atcaagggcg ttttcaatct 120 atacaaatcc ggtcttttcc agctggtcat ctttctccta ctctgtggca agcgttgtga 180 ctcatcattg ctatcaggat tcaatctgga gacagttcat ttcaacatgt cactgttgag 240 ctccatccct atggtctctg aacagcagca ctgcatccag cacaatcaca gctccataac 300 cttcagtttg ctgaccaaca agtccgactt ggaaaagtgc aatttcaccc gcctgcaagc 360 tgttgacagg gtgatctttg atctgttcag agagtttcat caccgtgttg gggattttcc 420 tgttacttct gatctgaaat gctctcacaa caccagctac agagtgatag aatatgaagt 480 caccaaagag agtctccctc gattgcagga agctgtgagc accttgttcc cagacctcca 540 tctctccgaa gataggtttc tgcaaattca ggcccatgat gacaagaact gcactggtct 600 acacccattg aactacctga ggctcctgaa agagaattca gaaacccact acaaagtgag 660 gaaattaatg aaattgtttc agtggtcttt gagtgatgag acaggtagcc ctctgccagg 720 tggacactgt ctagaaagat ggctcatctt tgcgtctgat ataaagtgct ttgataatgc 780 agcgattgcc aaatgcaata aagagcatga tgaggagttc tgtgacatgt tgaggctatt 840 tgactacaac aaagcaagta ttgccaagct taggggcgaa gcctcaagct cgatcaactt 900 gttgtcgggg agaatcaatg ccatcatttc agacacactt ttgatgagat catccctcaa 960 gaggctgatg ggcataccat actgcaatta tacaaagttc tggtatttaa accatacaaa 1020 actggggata cattctttac cccgatgttg gctggttagt aatgggagtt acctcaacga 1080 aacaaaattt actcatgata tggaagatga ggcagataaa ctgctgaccg agatgctaaa 1140 gaaagagtat gttaggagac aagagaaaac acccattact ctgatggaca tactgatgtt 1200 tagtgtctct ttctatatgt tttctgtaac actatgcata tgcaacatac ccacccatcg 1260 gcacatcaca ggtttgccgt gtcccaaacc acacagactc agaaagaatg gcacctgtgc 1320 ctgtggcttc tttaagtcaa taaacaggtc cactggttgg gccaaacact gagagtccca 1380 acacagggac cccatgaccg tcactccgct ttgcggagtg acggtcatgg ggtccgtgga 1440 gactcacaga ctcagcttgg ctgctgttct gaagatcatg tctgcaggca gcaagttcct 1500 tatgggctct tggtaaagtt gcccattcac tgctgattca tacatgatac agtccatcag 1560 tgcacaatgt ggtgtaatct ctttcttccc tttcttggac ttggtcacaa caattccagt 1620 atgctggttg caaaaggtct tgtatgagtc ccaaacctgg tcctcgaact ttctagaggc 1680 ctcttttgac atttgaatat caatgaattt cacgtccctt ctaccttgac tgtgaaggag 1740 tttttcaatg tcatccttcc cctgacaggt tatcaccatg ccaaggggga gtctttccaa 1800 cactgctgtg gttagtccag gttgggtgga gcaaagctga gtgaaatcca tgccatgaca 1860 gtacttgctg tcatttttga attgtttttg atccgtgggc tctctgtaga agtggaggca 1920 aagtctttct tctggctgga atattgctat ctccaccgga tcatcaggtc taccttcaat 1980 gtccatccat gttctcccct tggggttcag gtttttcata atgtcatcta agagttgaga 2040 ttggctgaag ctcacaccca caggaaattg gtggggggct tttgctcttt cgttctgtgg 2100 aggtgtaggg tcctttggag tcatatcaat gactgtgttg tcccaggatc tgccttttat 2160 gctggttctg gaagagatgt atggccaacc ctcacctgat aagcagatct tgtatagtag 2220 attctcatac gggtttcttt ctcctggaac ctcagacaca aacatctgta ctttgttcct 2280 tgcagttaga gttgccttga tcacgtcatc aatatttctg ctgttcaatt caatggtctc 2340 caacatgtct cctcccttca tgagagacgc accagctttg accaatgaag caagactcaa 2400 gttgtaacct gaaatgttga tcgcagaatc acaattgctt acatagtcta aaactggatg 2460 cttgttcttt agcttgtcca gatcatccat gttgggaaac tttgcggtgt aaatgaggcc 2520 cagatctaca caggcttgga cactatcatt cagatctacc cttgtctgtc tggttaaaca 2580 ggccagtgtc agacttggca tagtgccaaa ctgattgttc aggagagaag agtctttgac 2640 gtcccagacc ctcacaactg tgttccttgt tggcctcggg gtgcccatac caatcatgtt 2700 gaggagctct gacctcctgc ccaattgatc ctgactcaga ttccccctat agactccagg 2760 gcctctggct tcggtcctgg tcaccttctt tttgagtttc tccagatctg ttgccagaat 2820 catcaactca tcagaggtta gtttcccaac accaaccctg ttcttcttat tgctcgattt 2880 aaggtccacc aagccatcca ctgtctggtt caattctctc aatttcatta ggtcctcgtc 2940 attcctttta tcctttctca tgagtctctg gacatcggac accatagaga aatcaaggcc 3000 gttgatcaga ctcacggcat ccttgacaac tttggctctc acgtccgtgc aaaacgggga 3060 gagctctctt ctcagagtct gtaaccaaag gaaggatttc acttcttttg attgggacat 3120 attgtgagac aagatgtcga caagcgcaga agagaaagct cactggagga agtaagtgtc 3180 ctataaacg 3189 //