ID FJ947152; SV 1; linear; genomic RNA; STD; VRL; 4716 BP. XX AC FJ947152; XX DT 03-JUN-2009 (Rel. 101, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 3) XX DE Tomato necrotic ringspot virus isolate TT1 segment M, complete sequence. XX KW . XX OS Tomato necrotic ringspot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; unclassified Tospoviridae. XX RN [1] RP 1-4716 RX DOI; 10.1007/s00705-010-0856-0. RX PUBMED; 21104282. RA Seepiban C., Gajanandana O., Attathom T., Attathom S.; RT "Tomato necrotic ringspot virus, a new tospovirus isolated in Thailand"; RL Arch. Virol. 156(2):263-274(2011). XX RN [2] RP 1-4716 RA Seepiban C., Gajanandana O., Chiemsombat P., Attathom T., Attathom S.; RT "Serological and molecular characterization of Tomato necrotic ringspot RT virus"; RL Unpublished. XX RN [3] RP 1-4716 RA Seepiban C., Gajanandana O., Chiemsombat P., Attathom T., Attathom S.; RT ; RL Submitted (21-APR-2009) to the INSDC. RL Department of Plant Pathology, Faculty of Agriculture, Kasetsart RL University, Kamphaeng Saen Campus, Nakhon Pathom 73140, Thailand XX DR MD5; c77472997aaeb935c57381308e8d4a9b. DR EuropePMC; PMC3371012; 22715400. DR EuropePMC; PMC3388970; 21182398. XX FH Key Location/Qualifiers FH FT source 1..4716 FT /organism="Tomato necrotic ringspot virus" FT /segment="M" FT /host="Lycopersicon esculentum" FT /isolate="TT1" FT /mol_type="genomic RNA" FT /country="Thailand" FT /collection_date="18-Feb-2008" FT /db_xref="taxon:584711" FT gene 60..992 FT /gene="NSm" FT CDS 60..992 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:C5IJJ7" FT /protein_id="ACR45973.1" FT /translation="MSRLTNVLSSFLAAKNQDTDLTSIVKRDGGESNREFLARNVSKRD FT VEAALNNKAKTINGKQYISSMDSSVLGSYSGGEDIESSHDDILSRLVIEQSTHLSNWKN FT DSLVGNGNDKVSCTVQIMPTWNSNKRFMNLSRLIVWVVPIIPDPKGCVKASIIDQNKMT FT PSEKIVIGKQSSLVDPMCFIFHLNWSFPKERNNPKNCMLLNLTSNEKYSKGVSFASVMY FT SWVKNFCDTPIASEKNTCDVVPISRAKVIQSAALIEACKLMIPKGTNGKQISAQIKRLQ FT TMAEKVAIEEDGGENSEIDISIDPVYGGL" FT CDS complement(1300..4668) FT /codon_start=1 FT /product="glycoprotein precursor G1/G2" FT /db_xref="GOA:C5IJJ8" FT /db_xref="InterPro:IPR005167" FT /db_xref="UniProtKB/TrEMBL:C5IJJ8" FT /protein_id="ACR45974.1" FT /translation="MKKYYLPIYFLAMLLVSFASEVYLLSKTDKEQSIKMLQDRYKIDD FT PGDLIVLVPNNTKHQDDETSSGKAHSRTVREEGSTTMQTATTAADCDIFEKKNCMIKGV FT SDFNAHYQVDTGEKLLACISSSMKIFDLCQYDKDIKKITFLDFPVLPVLKLENKKVLEI FT GSKYFYVDKSNNPVNVDPNSGLKSPTVSKLSVRLSGDCHIDQVLLRSPYQVKVKSEEKI FT GLMVKSVKDQKTTPVRVISGDSTVNFLPEELDGNHFLLCGDKSSFVSKVDISVRNCVSK FT FSDEPKKIFFCTNFTWFKWIFVLLVIAFPVNRFIWKTKNSLMVWYDILGILTYPILWIL FT NWSWTYFPLKCRICGCFSLLTHTRSEKCVCNQNKAHRDHTSDCFLFKRDKKEWNSLTLI FT QQFQYTINTKLSTNFLVFLTKLMLATLLFSYLPKSLAASNNVCVEKCFYNMELNSLVTE FT KSGYKNGLETCQCMISNIITEIVFRDNNPISKSTSNNNCVQGYESCLINNSPAQNLYVC FT RNGCPSYRKLSQIPDVSFNKKYKGAEFKNNLISLKLANRLRQGYLDDPDQTRLLEKESV FT REYSFYESLKINDIPPVNLMSRQSLVYSTEVDGKYRYLIEMDIKSDTGSVFLLSSDDSH FT SPIEFMVYVKSVGVEYKIKYKYSTAKVDTTVSDYLVTCTGKCEECWNQKHKAGALDFCV FT TPTSWWGCEELGCLAINEGAICGHCTNIYDLSTLVNIYQVLESHVSAEICIKTVDGYSC FT KTYTDKVPVQTDYYQLDMSIDLHNDYMSIGKLFAYTKQQKILTGSIADLGDFSSSAFGH FT PQITSDGIPLSLPSKLNQNDFFWSCTAIGEKKINIKQCGLHTYNMIYVLSASSDKTYLK FT ESESRLYMTKNFLVGKLKIVTDMPKEMYKKVPSKPVISESKVSCSGCLQCAMGIECNLT FT YTSDTTFSSEISIDSCSFQSSQIGTFTGYNTKKIKAFCSSKIEDKTMKFIPEDQSELTV FT EMPIDEFSQIDQDTIISFDDKSAHDENKHHSNTSLSTFWDWMKAPFNWVASFFGSFFDI FT VRVTLVVLVICVAIYVLSYVIRLSKIYYTDRKKSESIYVQEIPIRENLLQNYTGIDTPR FT KRRSPPKNYDFDLEV" XX SQ Sequence 4716 BP; 1440 A; 859 C; 845 G; 1572 T; 0 other; agagcaatcg gtgcaacaat taattattaa tctcaaacca ccaacgttta atagaaataa 60 tgtctcgcct gactaacgtt ctaagcagtt tcctagctgc aaaaaaccag gacacagatt 120 taacctctat tgttaaaaga gatggaggag aaagcaacag agaattttta gctagaaatg 180 tatcaaagag agatgttgaa gctgctttaa acaacaaagc aaagactata aacgggaaac 240 agtacatatc gagcatggat tctagtgttc ttggatcata ttctggagga gaagatattg 300 aatcctctca tgatgacatt ttgtctcgac tcgttataga acagagcact cacttgagca 360 attggaagaa tgactctctt gttggcaatg gaaatgataa agtgagttgt actgtgcaaa 420 tcatgcctac atggaatagt aacaaaaggt tcatgaattt gtctagattg attgtctggg 480 tggttcccat aattccagat cctaaaggat gtgtcaaagc atctattata gaccagaaca 540 agatgacccc gtcagagaaa atcgttattg gaaagcaatc ttcattggtt gatcccatgt 600 gcttcatatt ccatctcaac tggtccttcc ctaaagaaag gaataatcct aaaaattgca 660 tgcttctaaa tcttaccagt aatgagaaat attctaaagg tgtaagcttt gcatctgtta 720 tgtattcttg ggtgaagaac ttctgtgaca ctcctatagc ctctgagaag aatacatgtg 780 atgttgttcc cataagcaga gccaaagtca tccaatctgc tgcactaatt gaagcctgca 840 agctgatgat ccctaaagga actaacggga agcaaatttc agctcagatt aagagactac 900 agaccatggc tgaaaaggta gctatagagg aggatggtgg agagaatagt gaaattgaca 960 tttctataga cccagtgtat ggaggtctct gagctcataa ctttgcgctc agtgttgtgc 1020 atgtttgagc ttataaagat attaacatgt ataattatat atatataagt ttgtgcaatt 1080 ataaagtaat atgaaacaaa aagaaacaaa aaacaacaaa aaaatcaaaa aaccaaacaa 1140 aaaacaaaaa gaagaaaaca aaaactaaac aaataataaa taaggcttcg gccagggatt 1200 ggcttttagc ctttttttag gttttatatt attttattgt ttttatgtat ttatttcttt 1260 attttgcttt ttgtttgatt tcctcaatac ttaacaaact caaacttcca gatcaaaatc 1320 atagttcttt ggtggggatc ttctctttct aggagtatct atcccggtat agttctgaag 1380 caaattttct ctgataggta tttcttgaac atatatgctt tcagatttct tcctatcagt 1440 ataataaatc tttgatagtc ttatcacata actaagtaca tatatagcta cacatatcac 1500 caaaacaacg agagtgaccc taacaatgtc aaagaagctg ccaaagaatg atgctaccca 1560 gttgaatggt gctttcatcc aatcccagaa tgtagacagg gatgtgttag agtggtgttt 1620 gttttcatca tgagcacttt tatcatcaaa gcttatgatt gtgtcttggt caatttgaga 1680 aaattcgtct ataggcattt ccactgtcaa ttcagactga tcttctggaa taaatttcat 1740 ggttttgtct tctattttac tagaacaaaa agctttaatt ttcttggtat tgtaacctgt 1800 gaatgtgcct atctgtgatg attgaaatga acaggaatca attgatatct ctgatgagaa 1860 ggtagtgtca gacgtatatg ttaaattgca ttctattccc atagcacact gtaggcagcc 1920 agagcaggac actttgcttt ctgatataac tggcttgcta ggaacttttt tgtacatctc 1980 tttaggcata tctgttacta tcttgagttt accgacaagg aagttttttg tcatgtataa 2040 tcggctttca ctttctttca gatacgtttt gtctgaagat gctgagagca cataaatcat 2100 gttgtatgtg tgtagtccac attgttttat gttgatcttt ttttctccta tagccgtgca 2160 actccaaaaa aagtcattct gatttagttt agatggcaga gaaagaggaa ttccgtcaga 2220 tgtgatctgt gggtgcccaa aagctgatga tgaaaaatcc cctaaatcgg caatactgcc 2280 tgtcaagatt ttttgctgtt ttgtgtatgc aaatagtttt cctatactca tataatcgtt 2340 gtgtagatcg atactcatgt ctaactgata ataatccgtt tgtacaggca ctttgtctgt 2400 gtatgtcttg catgagtagc cgtcaacggt ctttatacat atttccgcac ttacatggct 2460 ttcgaggacc tgatagatat taaccaaagt ggataaatca taaatgtttg tgcaatgtcc 2520 acaaattgct ccctcattga tggctaagca tcccaattct tcacaacccc accatgaagt 2580 aggggtaaca cagaaatcta aggcacctgc cttatgtttc tgattccaac attcttcgca 2640 tttacccgtg catgttacaa ggtagtctga aactgttgta tcaactttgg ctgtggagta 2700 tttatatttg attttatatt caactcccac acttttcaca taaaccataa attctattgg 2760 agagtgggaa tcatcactgc ttagcaagaa gacagaccca gtatcggatt ttatatccat 2820 ttctattaag tatctgtatt ttccgtcaac ctctgtcgaa tataccagtg actgtctaga 2880 cattaaattt actggtggta tgtcatttat ctttaaagac tcgtaaaagc tgtattctct 2940 aactgattct ttctccaata acctcgtctg atctgggtca tctagatagc cttgacgtaa 3000 cctattggct aattttaagc taatgaggtt atttttgaat tcggctcctt tatacttctt 3060 attgaaagaa acatctggga tctgcgacaa ttttctatat gaagggcaac cattcctaca 3120 aacatagaga ttctgtgcag ggctgttgtt aattaagcat gattcatagc cttgaacaca 3180 attgttattt gatgtgcttt ttgatattgg attgttgtct ctgaacacta tttcagttat 3240 tatgttactg atcatgcact gacaagtctc caaaccattt ttgtaacctg atttttctgt 3300 tactaagcta ttcaactcca tattataaaa gcacttttcc acacacacat tgttgctcgc 3360 tgctaagctt ttcggtaaat aactaaatag taatgtagct aacattagct tggtgaggaa 3420 aaccaaaaaa ttggtgctta gttttgtatt tattgtgtat tgaaactgtt ggatcaaggt 3480 cagcgagttc cattctttct tatctctttt gaacaagaag caatcagatg tatgatctct 3540 gtgagctttg ttttgattgc aaacacattt ttctgaacgt gtatgagtta gtaaagaaaa 3600 acaaccgcaa attctacact tcagtggaaa ataagtccag gaccagttaa gaatccacag 3660 tatcggatat gttaatatcc ctaagatgtc ataccatacc atcagggagt ttttagtttt 3720 ccaaataaac ctattaactg gaaatgcaat aacaagcagc acaaagatcc acttgaacca 3780 tgtgaagttg gtgcagaaga aaattttctt cggttcatct gaaaatttag atacgcaatt 3840 tcgtacagat atatcgactt ttgacacgaa acttgattta tctccgcaca acagaaaatg 3900 attaccatcc agttcttctg gcaagaagtt taccgtggaa tctcctgaaa taacccttac 3960 aggtgttgtc ttttgatctt ttacactttt caccattaaa ccgatctttt cttcagattt 4020 tactttaacc tggtaaggtg atctcagaag cacttgatca atatgacagt ctccagacaa 4080 tcttacagac aactttgata ctgtggggct ttttaaacca gaattagggt ctacattgac 4140 aggattgtta gacttgtcca cataaaagta tttcgatcca atttcaagaa cctttttgtt 4200 ctctagcttc agtactggta gaacaggaaa atctaggaat gtaatcttct ttatgtcttt 4260 atcatattga cataaatcga atattttcat tgaactactt atgcaggcca gaagcttttc 4320 accagtatca acctgataat gggcattaaa atcacttaca ccctttatca tgcaattctt 4380 tttttcgaag atgtcacagt ctgctgctgt tgttgcagtc tgcatagttg tagacccttc 4440 ttccctcaca gtccttgaat gagctttccc agaacttgtt tcgtcgtctt gatgttttgt 4500 attgtttggt acaagcacta tcagatctcc tggatcatca atcttatacc tgtcttgcag 4560 cattttgata ctctgttctt tgtccgtttt ggatagaagg tacacttcag atgcgaaaga 4620 gaccagcaac atcgctaaaa aatagatagg tagatagtat ttcttcatga ttatgaggct 4680 tatgagggaa tttttttgtt atgcactgat tgctct 4716 //