ID   FJ944019; SV 1; circular; genomic DNA; STD; VRL; 2611 BP.
XX
AC   FJ944019;
XX
DT   01-MAY-2011 (Rel. 108, Created)
DT   02-JUL-2012 (Rel. 113, Last updated, Version 2)
XX
DE   Rhynchosai mild mosaic virus strain PR79 segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Rhynchosia mild mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2611
RX   DOI; 10.1007/s11033-011-1303-3.
RX   PUBMED; 22447536.
RA   Zhao Z.C., Hu G.B., Hu F.C., Wang H.C., Yang Z.Y., Lai B.;
RT   "The UDP glucose: flavonoid-3-O-glucosyltransferase (UFGT) gene regulates
RT   anthocyanin biosynthesis in litchi (Litchi chinesis Sonn.) during fruit
RT   coloration";
RL   Mol. Biol. Rep. 39(6):6409-6415(2012).
XX
RN   [2]
RP   1-2611
RA   Idris A.M., Brown J.K.;
RT   "Cloning of a distinct bean begomovirus in native weed from Puerto Rico";
RL   Unpublished.
XX
RN   [3]
RP   1-2611
RA   Idris A.M., Brown J.K.;
RT   ;
RL   Submitted (20-APR-2009) to the INSDC.
RL   Plant Sciences, University of Arizona, Tucson, AZ 85721, USA
XX
DR   MD5; ad62e006b8a2526887459b71aada1977.
XX
CC   GenBank Accession Numbers represent FJ944019-FJ944020 the complete
CC   genome of Rhynchosai mild mosaic virus strain PR79.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2611
FT                   /organism="Rhynchosia mild mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Rhynchosia minima"
FT                   /strain="PR79"
FT                   /mol_type="genomic DNA"
FT                   /country="Puerto Rico"
FT                   /collection_date="Aug-1997"
FT                   /db_xref="taxon:714308"
FT   CDS             200..949
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="AV1"
FT                   /db_xref="GOA:F4MJ54"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:F4MJ54"
FT                   /protein_id="ADC32504.1"
FT                   /translation="MPKRDAPWRSTAGTSKVSRNLNYSPGGGPKTNRANAWVNRPMYRK
FT                   PRIYRMYRTPDVPRGCEGPCKIQSFEQRHDVSHVGRVMCISDVTRGSGITHRVGKRFCV
FT                   KSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN
FT                   DLRDRFQVMHKFYAKVTGGQYASNEQAIVKRFWKVNTHVVYNHQEAAKYENHTENALLL
FT                   YMACTHASNPVYATLKIRIYFYDSIMN"
FT   CDS             complement(946..1344)
FT                   /codon_start=1
FT                   /product="REn"
FT                   /note="AC3"
FT                   /db_xref="GOA:F4MJ55"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:F4MJ55"
FT                   /protein_id="ADC32507.1"
FT                   /translation="MDSRTGEPITAAQATNGVFIWEVQNPLYFKIINVERPMYTNSTVF
FT                   DIQIRANHNLRKALALHKAYFNFQVWTTLTTASGQIYLSRFKYLVMYYLDNLGVISVNN
FT                   IIRAVSYATDRRYVNNVVEDHEIKYKFY"
FT   CDS             complement(1091..1507)
FT                   /codon_start=1
FT                   /product="TrAP"
FT                   /note="AC2"
FT                   /db_xref="GOA:F4MJ56"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:F4MJ56"
FT                   /protein_id="ADC32506.1"
FT                   /translation="MTGHKKTPSTSPLRNHSTPPSIKPRHRYAKRQTRRRRFDLQCGCS
FT                   IYVHINCSNHGFTHRGTHHCSSSNEWRFYLGGSKSPLFQDNQRGASDVHEQHGVRHTNP
FT                   SQPQPEESVGTSQSLLQFPSLDDIDDSFWADLFK"
FT   CDS             complement(1401..2477)
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /note="AC1"
FT                   /db_xref="GOA:F4MJ57"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:F4MJ57"
FT                   /protein_id="ADC32505.1"
FT                   /translation="MPLQKRFRLNAKNYFLTYPKCSLTKEEALSQLQNLSTPVNKKFIK
FT                   ICTELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI
FT                   DKDGDTIEWGEFQIDGRSARGGQQSANDSYARALNAESAEEAMQIIKEQQPKHFVLQYH
FT                   NLVSNITKIFHKPPEPWVSPFQLSTFNNVPEIMSDWVNENISDSAARPLRPISIIVEGP
FT                   SRTGKTIWARSLGPHNYLCGHIDLNPRIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW
FT                   QSNCKYGKPIQIKGGIPTIFLCNPGPHSSYKEYLGEEKNKSLNDWAQKNAVYVSIEEPL
FT                   YSTVNQTSSSLREETDST"
XX
SQ   Sequence 2611 BP; 657 A; 506 C; 634 G; 814 T; 0 other;
     accggatggc cgaccgctgg ctttggtgta tggcctgtac gcacgtgatg ctgttgttcg        60
     aattaaagat gtttattttg ctttgtccaa tgacgtttgt cgtggcgcgt ctagataatt       120
     gtgttcaact tagcgcccaa gtattgactg tatataaata cgagctatgt gacgtggaac       180
     taatcatctt taattcaaaa tgcctaagcg ggatgccccg tggcgttcta ctgcggggac       240
     ctctaaggtt agtcgcaatt tgaattactc ccctggtgga ggcccaaaaa ccaacagggc       300
     caatgcttgg gttaacaggc ccatgtacag gaagcccagg atatatcgga tgtacaggac       360
     ccccgatgtt ccaagaggct gtgaagggcc ctgtaagatc cagtcgtttg aacaacgcca       420
     tgatgtttcg cacgttggta gggttatgtg tatatccgac gtgacacgtg gtagtggtat       480
     tacccatcgc gttgggaaac gattttgtgt taagtctgtg tatattttag gcaaagtatg       540
     gatggacgac aacatcaagt tgaagaacca caccaacagt gttatgtttt ggttggttag       600
     ggataggaga ccatatggca cccctatgga ttttgggcag gtgtttaata tgtttgacaa       660
     tgagcccagt accgctactg ttaagaacga tcttcgtgat cgtttccagg tgatgcataa       720
     gttttatgcc aaggttacag gtggacaata tgcgagcaat gaacaggcaa ttgttaagcg       780
     tttttggaag gtcaacactc atgtggtgta caaccatcag gaagccgcaa agtacgagaa       840
     ccatactgag aacgctctat tgttgtatat ggcttgtact catgcctcga accctgtgta       900
     tgctactttg aaaattcgga tctattttta cgattcgata atgaattaat aaaatttgta       960
     ttttatttca tgatcttcaa ctacattatt tacataacgt ctgtccgttg catatgagac      1020
     agctctgatt atattgttaa ctgaaataac acctaaattg tctaagtaat acatgacaag      1080
     gtacttaaat ctacttaaat aaatctgccc agaagctgtc gtcaatgtcg tccagacttg      1140
     gaaattgaag taggctttgt gaagtgccaa cgctttcctc aggttgtggt tggctcggat      1200
     ttgtatgtcg aacaccgtgc tgttcgtgta catcggacgc tccacgttga ttatcttgaa      1260
     ataaagggga ttttgaacct cccaaataaa aacgccattc gttgcttgag ctgcagtgat      1320
     gggttcccct gtgcgtgaat ccatgattgc tgcagttaat gtggacgtaa atcgaacagc      1380
     cgcactgcag atcaaatctt ctacgtcgag tctgtctctt cgcgtaacga tgacgaggtt      1440
     tgattgacgg tggagtagag tggttcctca atggagacgt agacggcgtt tttttgtgcc      1500
     cagtcattga gtgatttgtt tttctcttct ccgagatact ccttatatga tgaatgggga      1560
     ccaggattgc agaggaagat agtgggaatt cctcctttaa tttgaattgg ctttccgtat      1620
     ttgcagtttg attgccagtc cctttgggcc cccatgaact ctttaaagtg cttcagataa      1680
     tgcggatcaa cgtcatcgat gacgttatac cacgcatcgt tggagtatat ccttgggttg      1740
     agatcgatat gaccacataa ataattgtga gggcccagac ttcgggccca tattgttttg      1800
     cccgttcttg atggaccttc aacaatgatt gatatcggtc tcaatggccg cgcagcggaa      1860
     tcggaaatat tttcgttaac ccaatcggac atgatttctg ggacattgtt gaacgtggat      1920
     aattgaaacg gagaaaccca tggttctggt ggtttatgaa atattttcgt tatgttggac      1980
     accagattgt gatattgaag gacgaaatgt ttaggttgtt gctctttaat aatctgcata      2040
     gcctcttctg cagattctgc atttaacgcc cttgcatatg aatcgttagc agattgctga      2100
     cctcctctag cagatctgcc gtcgatctga aattctcccc attcaattgt atcgccgtcc      2160
     ttgtcgatgt aggacttgac gtcggagctt gacttagctc cctgaatgtt cggatggaaa      2220
     tgtgctgacc tggttgggga aaccaagtcg aagaatctgt tattcgtgca ctggtatttc      2280
     ccttcgaact ggatgagcac gtgaagatga ggttccccat tttcatggag ttccgtgcat      2340
     attttgatga acttcttgtt aactggagtt gataggtttt gcaattggga aagagcttct      2400
     tcttttgtta gagagcattt ggggtatgtg aggaaatagt ttttggcatt taagcggaaa      2460
     cgcttctgga gtggcatttt tgtaataaga agggtgtacc ccgattgagg ttctcaacac      2520
     tggcttatac tattggtgta ttgggggtca atatatagta taccttctta ctagcatctg      2580
     ctgacacgtg gaggccatcc gttataatat t                                     2611
//