Dbfetch
ID FJ944019; SV 1; circular; genomic DNA; STD; VRL; 2611 BP. XX AC FJ944019; XX DT 01-MAY-2011 (Rel. 108, Created) DT 02-JUL-2012 (Rel. 113, Last updated, Version 2) XX DE Rhynchosai mild mosaic virus strain PR79 segment DNA-A, complete sequence. XX KW . XX OS Rhynchosia mild mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2611 RX DOI; 10.1007/s11033-011-1303-3. RX PUBMED; 22447536. RA Zhao Z.C., Hu G.B., Hu F.C., Wang H.C., Yang Z.Y., Lai B.; RT "The UDP glucose: flavonoid-3-O-glucosyltransferase (UFGT) gene regulates RT anthocyanin biosynthesis in litchi (Litchi chinesis Sonn.) during fruit RT coloration"; RL Mol. Biol. Rep. 39(6):6409-6415(2012). XX RN [2] RP 1-2611 RA Idris A.M., Brown J.K.; RT "Cloning of a distinct bean begomovirus in native weed from Puerto Rico"; RL Unpublished. XX RN [3] RP 1-2611 RA Idris A.M., Brown J.K.; RT ; RL Submitted (20-APR-2009) to the INSDC. RL Plant Sciences, University of Arizona, Tucson, AZ 85721, USA XX DR MD5; ad62e006b8a2526887459b71aada1977. XX CC GenBank Accession Numbers represent FJ944019-FJ944020 the complete CC genome of Rhynchosai mild mosaic virus strain PR79. XX FH Key Location/Qualifiers FH FT source 1..2611 FT /organism="Rhynchosia mild mosaic virus" FT /segment="DNA-A" FT /host="Rhynchosia minima" FT /strain="PR79" FT /mol_type="genomic DNA" FT /country="Puerto Rico" FT /collection_date="Aug-1997" FT /db_xref="taxon:714308" FT CDS 200..949 FT /codon_start=1 FT /product="coat protein" FT /note="AV1" FT /db_xref="GOA:F4MJ54" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F4MJ54" FT /protein_id="ADC32504.1" FT /translation="MPKRDAPWRSTAGTSKVSRNLNYSPGGGPKTNRANAWVNRPMYRK FT PRIYRMYRTPDVPRGCEGPCKIQSFEQRHDVSHVGRVMCISDVTRGSGITHRVGKRFCV FT KSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN FT DLRDRFQVMHKFYAKVTGGQYASNEQAIVKRFWKVNTHVVYNHQEAAKYENHTENALLL FT YMACTHASNPVYATLKIRIYFYDSIMN" FT CDS complement(946..1344) FT /codon_start=1 FT /product="REn" FT /note="AC3" FT /db_xref="GOA:F4MJ55" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F4MJ55" FT /protein_id="ADC32507.1" FT /translation="MDSRTGEPITAAQATNGVFIWEVQNPLYFKIINVERPMYTNSTVF FT DIQIRANHNLRKALALHKAYFNFQVWTTLTTASGQIYLSRFKYLVMYYLDNLGVISVNN FT IIRAVSYATDRRYVNNVVEDHEIKYKFY" FT CDS complement(1091..1507) FT /codon_start=1 FT /product="TrAP" FT /note="AC2" FT /db_xref="GOA:F4MJ56" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F4MJ56" FT /protein_id="ADC32506.1" FT /translation="MTGHKKTPSTSPLRNHSTPPSIKPRHRYAKRQTRRRRFDLQCGCS FT IYVHINCSNHGFTHRGTHHCSSSNEWRFYLGGSKSPLFQDNQRGASDVHEQHGVRHTNP FT SQPQPEESVGTSQSLLQFPSLDDIDDSFWADLFK" FT CDS complement(1401..2477) FT /codon_start=1 FT /product="Rep" FT /note="AC1" FT /db_xref="GOA:F4MJ57" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F4MJ57" FT /protein_id="ADC32505.1" FT /translation="MPLQKRFRLNAKNYFLTYPKCSLTKEEALSQLQNLSTPVNKKFIK FT ICTELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGQQSANDSYARALNAESAEEAMQIIKEQQPKHFVLQYH FT NLVSNITKIFHKPPEPWVSPFQLSTFNNVPEIMSDWVNENISDSAARPLRPISIIVEGP FT SRTGKTIWARSLGPHNYLCGHIDLNPRIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNCKYGKPIQIKGGIPTIFLCNPGPHSSYKEYLGEEKNKSLNDWAQKNAVYVSIEEPL FT YSTVNQTSSSLREETDST" XX SQ Sequence 2611 BP; 657 A; 506 C; 634 G; 814 T; 0 other; accggatggc cgaccgctgg ctttggtgta tggcctgtac gcacgtgatg ctgttgttcg 60 aattaaagat gtttattttg ctttgtccaa tgacgtttgt cgtggcgcgt ctagataatt 120 gtgttcaact tagcgcccaa gtattgactg tatataaata cgagctatgt gacgtggaac 180 taatcatctt taattcaaaa tgcctaagcg ggatgccccg tggcgttcta ctgcggggac 240 ctctaaggtt agtcgcaatt tgaattactc ccctggtgga ggcccaaaaa ccaacagggc 300 caatgcttgg gttaacaggc ccatgtacag gaagcccagg atatatcgga tgtacaggac 360 ccccgatgtt ccaagaggct gtgaagggcc ctgtaagatc cagtcgtttg aacaacgcca 420 tgatgtttcg cacgttggta gggttatgtg tatatccgac gtgacacgtg gtagtggtat 480 tacccatcgc gttgggaaac gattttgtgt taagtctgtg tatattttag gcaaagtatg 540 gatggacgac aacatcaagt tgaagaacca caccaacagt gttatgtttt ggttggttag 600 ggataggaga ccatatggca cccctatgga ttttgggcag gtgtttaata tgtttgacaa 660 tgagcccagt accgctactg ttaagaacga tcttcgtgat cgtttccagg tgatgcataa 720 gttttatgcc aaggttacag gtggacaata tgcgagcaat gaacaggcaa ttgttaagcg 780 tttttggaag gtcaacactc atgtggtgta caaccatcag gaagccgcaa agtacgagaa 840 ccatactgag aacgctctat tgttgtatat ggcttgtact catgcctcga accctgtgta 900 tgctactttg aaaattcgga tctattttta cgattcgata atgaattaat aaaatttgta 960 ttttatttca tgatcttcaa ctacattatt tacataacgt ctgtccgttg catatgagac 1020 agctctgatt atattgttaa ctgaaataac acctaaattg tctaagtaat acatgacaag 1080 gtacttaaat ctacttaaat aaatctgccc agaagctgtc gtcaatgtcg tccagacttg 1140 gaaattgaag taggctttgt gaagtgccaa cgctttcctc aggttgtggt tggctcggat 1200 ttgtatgtcg aacaccgtgc tgttcgtgta catcggacgc tccacgttga ttatcttgaa 1260 ataaagggga ttttgaacct cccaaataaa aacgccattc gttgcttgag ctgcagtgat 1320 gggttcccct gtgcgtgaat ccatgattgc tgcagttaat gtggacgtaa atcgaacagc 1380 cgcactgcag atcaaatctt ctacgtcgag tctgtctctt cgcgtaacga tgacgaggtt 1440 tgattgacgg tggagtagag tggttcctca atggagacgt agacggcgtt tttttgtgcc 1500 cagtcattga gtgatttgtt tttctcttct ccgagatact ccttatatga tgaatgggga 1560 ccaggattgc agaggaagat agtgggaatt cctcctttaa tttgaattgg ctttccgtat 1620 ttgcagtttg attgccagtc cctttgggcc cccatgaact ctttaaagtg cttcagataa 1680 tgcggatcaa cgtcatcgat gacgttatac cacgcatcgt tggagtatat ccttgggttg 1740 agatcgatat gaccacataa ataattgtga gggcccagac ttcgggccca tattgttttg 1800 cccgttcttg atggaccttc aacaatgatt gatatcggtc tcaatggccg cgcagcggaa 1860 tcggaaatat tttcgttaac ccaatcggac atgatttctg ggacattgtt gaacgtggat 1920 aattgaaacg gagaaaccca tggttctggt ggtttatgaa atattttcgt tatgttggac 1980 accagattgt gatattgaag gacgaaatgt ttaggttgtt gctctttaat aatctgcata 2040 gcctcttctg cagattctgc atttaacgcc cttgcatatg aatcgttagc agattgctga 2100 cctcctctag cagatctgcc gtcgatctga aattctcccc attcaattgt atcgccgtcc 2160 ttgtcgatgt aggacttgac gtcggagctt gacttagctc cctgaatgtt cggatggaaa 2220 tgtgctgacc tggttgggga aaccaagtcg aagaatctgt tattcgtgca ctggtatttc 2280 ccttcgaact ggatgagcac gtgaagatga ggttccccat tttcatggag ttccgtgcat 2340 attttgatga acttcttgtt aactggagtt gataggtttt gcaattggga aagagcttct 2400 tcttttgtta gagagcattt ggggtatgtg aggaaatagt ttttggcatt taagcggaaa 2460 cgcttctgga gtggcatttt tgtaataaga agggtgtacc ccgattgagg ttctcaacac 2520 tggcttatac tattggtgta ttgggggtca atatatagta taccttctta ctagcatctg 2580 ctgacacgtg gaggccatcc gttataatat t 2611 //