ID FJ940225; SV 1; linear; genomic RNA; STD; VRL; 6441 BP. XX AC FJ940225; XX DT 26-MAY-2009 (Rel. 100, Created) DT 26-MAY-2009 (Rel. 100, Last updated, Version 1) XX DE Pepino mosaic virus strain US1, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6441 RA Van der Vlugt R.A.A., Van Raaij H.M.G., Dullemans A.M.; RT ; RL Submitted (16-APR-2009) to the INSDC. RL Biointeractions & Plant Health, Plant Research International, RL Droevendaalsesteeg 1, Wageningen, Gelderland 6708 PB, The Netherlands XX DR MD5; 2b2a96ccb942f6d2bc8b454f23d2d2c8. DR EuropePMC; PMC3356388; 22623984. XX CC Name: PepMV US1. XX FH Key Location/Qualifiers FH FT source 1..6441 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /strain="US1" FT /mol_type="genomic RNA" FT /collection_date="2005" FT /note="acronym: PepMV" FT /db_xref="taxon:112229" FT 5'UTR 1..85 FT CDS 86..4405 FT /codon_start=1 FT /product="polymerase protein" FT /db_xref="GOA:C4PFL2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C4PFL2" FT /protein_id="ACR24273.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFIGHDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFSYVSQLSSINDYDNMLQSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELIITTHTAIGQAISEAANTYKERRQLTQLVKQGVISLADFQSEEPKIE FT YTEFERETKPPVDCVTNYNNAVKNLGLSEPVDLPECSYARNSVPNNEISMAMTDADNLA FT VINEIESLLSEEIAAPTLPALKNKTWASYASDTSSKKNEEIENIIAELEASRKVSNVQQ FT TQHNYHISQCPTSLTADLQWKAWLPLLNAHGFKGDQIQHSPDGQIIQPIQDINNKTPRS FT EYPSSIPADLVSTLRNIKRAVYAIPISHRRASAYSSDVKNNRTGKLLCAQSKEWKESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDNNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYSNYCGFYLNATHRNIRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSQMKKNAMQDIGHKAMTYAGCQGLTAPRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPVEPEA FT PATHFPVSNGNNLEKLASTLPEKFAREIYDKHHGYSNTIQTENPIVQLFQHQQAKDETL FT FWATIEARLSITTPDANLREFTLKKDVGDILFFNYHSAMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFEPNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNNFVLNGWNFNRTAQTNDFTAF FT DQSQDGVMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLSSAVKQVYAGDDMALDGVVMEKPSFKKLQSKLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDKLHEY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT CDS 4430..5134 FT /codon_start=1 FT /product="TGB1 protein" FT /db_xref="GOA:Q69A03" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q69A03" FT /protein_id="ACR24274.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGVIVVHGIAGTGKTTLLRTLFSA FT YPNLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESYQEPTLALFGDPCQC FT TFIERLRIPHYTSFRTHRFGKSTAELLNKLFQLQIVSVKQEDDIVEFFDPFQVDPTENI FT SASEEEVLEFVSDQVVTTSSEELAGLEFTETTFYCTTLAAAVTENPARTFISLTRHTQR FT LTIGELNARIDS" FT CDS 5115..5486 FT /codon_start=1 FT /product="TBG2 protein" FT /db_xref="GOA:Q69A02" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q69A02" FT /protein_id="ACR24275.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSVSRTTHQH FT SCYNTHSAANTTPPLSGHH" FT CDS 5338..5586 FT /codon_start=1 FT /product="TGB3 protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C4PFL5" FT /protein_id="ACR24276.1" FT /translation="MSSYSSSFLHWVSSSPINLVLALAVLLTSILATIHILQPTQHHHC FT QVIIDGAAIVVTNCENTPEVLKAINFAPWNGLSFPSV" FT CDS 5633..6346 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:C4PFL6" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:C4PFL6" FT /protein_id="ACR24277.1" FT /translation="MTDNTPVAATSGSPPTAQDAGAKAPADFSNPNTAPSLSDLKKVKY FT VSTVTSVATPTEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6347..6415 FT polyA_site 6416 XX SQ Sequence 6441 BP; 2073 A; 1461 C; 1154 G; 1753 T; 0 other; ggaaaacaaa acataaccaa aacaacaaag tcataataac actacataac cacgcggaaa 60 aacagctaac gcactttacc gcattatgtc tcgtgttaga aatactttgg aaaagatcag 120 agaccctcaa gtacagtcaa gcatatgcga agcagcatac caacatgttc gaccagtttt 180 gaaggaatct ctaatcaatt gtccctatgc gctcaatgat tatgaagccg acacccttga 240 gaatttaggt gtcacaatta accctcatgc aattcaaacc catacacacg cagcagctaa 300 agtggttgaa aacagaatgc tagagattgt tggtcaccat ctaccaaaag atgagaaggt 360 taccttcatt ttcctaaaac gtagtaaatt gcgttacatg agaagagctg ctgttcataa 420 agatgttttt gtcaaccata acatagagcc caaagatttt tttaggtatg acgaggagtc 480 cacatcaaca agcttctccg tgaatactag aatcgcatac atttcagatt ccttacattt 540 catggagcca gctgatgtta cacacctttt tgaccgttgt caaaatctta aaacattaat 600 ggcaaccgtt gtcctacctg ttgaagcaat tcatagacaa acatctttat ttcctgcgat 660 atactccatt aactacaatg aagaaggctt tgagtatatc cctggttccc atggtggtgg 720 ggcatacttt cacaagtatg agaccttaga ctggcttaaa tattccagat tcataggaca 780 tgatccattg actggcctca aatataccat tacaattcaa atggttgaaa gtctaggcgc 840 caaccacctt ttccttttcc aaagaggaaa ttttgaaacg cccttatata ggacctttca 900 aaaaaatagt tttgtgacat tccctaatat atttcatccc cgacatgtca atgccacaaa 960 acctatgcca cgctccaggg caatccaatt gtacttatac gttaagtctg tcaacaaagt 1020 cacacaaaga gacatctttg caaaagttag acagcttata tctacagctg agctggaact 1080 gtatgaccct gatgagctta ctcatgttgt caattacttt tcatatgttt cacaattgtc 1140 atctataaat gattatgaca acatgctaca atccagtttc ttcaagaaat tggttgcacc 1200 catgcaacac gactggaggt gcatgattga attcttccgg ggaaagagtg atttcaatca 1260 acttctcacc gctcttcaat ggaaagattt ttcctatact atcaaaactg aagagctaat 1320 aattactaca cacactgcca ttgggcaagc tataagtgaa gcagctaata cttataagga 1380 aagaaggcaa ttgacacaac tggtcaagca aggagtgatt tcactcgctg attttcaatc 1440 tgaagagccc aaaatagaat acaccgaatt cgagcgagaa acaaaaccac cagttgattg 1500 tgtgaccaat tacaacaatg ctgttaagaa ccttggcctg tctgaaccag tggatctgcc 1560 agaatgctca tacgctagaa actctgttcc taacaatgag atatctatgg ctatgactga 1620 tgctgacaac ttagctgtta taaatgaaat tgaatctctc ttgtctgaag aaatcgcagc 1680 accaacactt ccagcattga aaaataaaac atgggctagt tatgcatctg acacttcatc 1740 aaagaagaat gaagaaattg aaaatataat tgctgagcta gaagcttcac gtaaggtctc 1800 caatgtccag caaacacagc acaactacca tatctcacaa tgccccactt ccttaactgc 1860 tgatcttcaa tggaaagcct ggctcccact tctcaatgcc catggtttca aaggtgatca 1920 gatccaacat agtcccgacg gccaaataat ccaaccaatt caggacatca acaataaaac 1980 accaagatct gaatacccat ctagcatccc tgcagatctt gtttcaacct tgcgcaatat 2040 taaaagagca gtttatgcta ttcctatcag ccacagaagg gccagcgctt atagctcaga 2100 tgttaaaaat aacagaactg gaaaactgct ctgtgctcaa tccaaagaat ggaaagagag 2160 ttttgctttc aaaatgcaac atgaagacat agtcaaatct ggtgttgtca tacatggttg 2220 tggcggctcc ggaaaatcac aagcattgca aaacttcctt agaactttgg gtgacaataa 2280 tgactgctgt acagttgttg tccccacagt agagctcagg aatgactggg ttaacaaatt 2340 gtgcaagttg cctatggaac acatcaaaac atttgaaaaa gcaatgattc aaccaggctt 2400 tcctgttgtc atttttgacg actatactaa gctgccaccc ggttacattg aagcttatct 2460 gttccatcat gccaacaccg aactcttcat cctcactggt gactctagac aaagtgtata 2520 tcatgagtcc aacaatgaag cttacattgc ctctcttgat gaagctgttg cctactattc 2580 caactactgt ggtttctatt tgaacgctac gcacagaaat atacgtagtt tagctaacaa 2640 gttgggagtg tacagtgaaa aagaaggaca cctcaaaatt acttttgcat ccaatgctct 2700 acaaaaatgc aaagtaccca tcttggtgcc ctctcagatg aagaaaaatg caatgcaaga 2760 cattggccat aaagcaatga cttatgcagg atgtcaagga cttactgctc caagagttca 2820 aattttgctt gacaaccaca cacagcattg ctcggacaga gttctttaca catgtctttc 2880 acgagctgtg gattctatcc attttatcaa tactggcccc aacaattctg aattttggga 2940 taagcttgaa gctacaccat acctcaaagc ctttattgat acataccggg atgaaaagac 3000 tgagatgttg aattcaaaac ctgctgatga cagccctgtg gaacctgaag ctcctgctac 3060 tcatttcccc gtctctaacg gcaacaactt agagaaatta gcttcaacac tacctgaaaa 3120 gtttgctcgg gagatctatg ataaacatca tggttattcc aacaccatac aaacagagaa 3180 ccccatagta caacttttcc aacatcagca ggcaaaagat gaaactctct tttgggcaac 3240 aattgaggca agactttcta taaccacacc agatgctaac ctcagagaat ttactttgaa 3300 gaaagacgtt ggagatattc tgttctttaa ctatcactca gcaatgtgtc tgccagctga 3360 ccctgtcgac ttcgagccaa gaacttggga aatatgtgca gctgaagtca agaatacata 3420 cctagcaaaa ccaatggcca atttgataaa tgccgctagt cgacaatctc ctgacttcga 3480 gcctaacaag atctcactgt ttttgaagtc acaatgggtt aagaaagtag agaaattggg 3540 agcaatcaaa tcaaagcctg ggcaaacaat tgcggctttt atgcagcaaa ccgttatgct 3600 gtacggaact atggctagat acttaagaaa aatgagacaa agatttcaac caaaacacat 3660 tttcatcaat tgtgaaacta caactgatga tctgaataat tttgttctca atggttggaa 3720 ctttaatcga actgctcaga ctaatgattt cactgcattt gatcaatccc aagatggagt 3780 tatgttacaa tttgaagtca tgaaggctaa attcttcaac attcctgcag acgtgattga 3840 agggtatatc aacattaagc ttaacgctaa aattttccta ggtacccttt caattatgag 3900 gttatcaggt gaaggtccca catttgatgc aaacactgaa tgctctattg cttacacagc 3960 aacaagatac catctgagtt cagcagtgaa acaagtttac gctggtgatg acatggctct 4020 tgacggagtg gtcatggaaa aaccctcctt taagaaatta cagagcaagc ttaaattgac 4080 atcaaaaaca ttgtttccaa aacaagttaa gggtgattat gccgaatttt gtgggtggac 4140 ttttacccca ggtgggatta ttaaaaatcc tttgaaaatg catgcatcca tcatgttaca 4200 agaagcaata ggtaacctcc acactgctgc taggtcatat gcaatagaca tgaagcattc 4260 ataccaaatg ggagataaat tgcatgaata ccttactcct gatgaagctg agcaacattt 4320 cttggctgtt cgcaaattgc acaaactcca ccaaggtgaa gccatgagac ttggggagaa 4380 gagcccccca aaagcaacac attgacgggt taagtttccc ctgttcgaaa tggaaagatc 4440 cactctaata aatttacttc aactgcacca ctttgaacct aaactcagcg ttgaaggagt 4500 tattgttgta cacggaatcg ctggaacagg gaaaactacc ctacttagaa ctttattttc 4560 cgcttacccg aacttagtta taggatcacc taggccttgt tatttagata aagctaataa 4620 aatttcacaa gtttgtttat cttgctttcc aaacaccctt tgtgatattg tcgatgagta 4680 ccatcttcta gaaagttacc aagaacctac tttggctttg tttggagacc cttgtcagtg 4740 tactttcatt gaaagactta gaattccaca ctacacttcc ttcagaacac atagatttgg 4800 caagtctact gcagagcttt taaacaagtt gtttcaactt caaattgtct ctgtaaaaca 4860 agaagacgac atagttgaat tctttgaccc atttcaagta gaccctactg aaaatatttc 4920 agcatctgag gaagaagttt tggaatttgt ctctgatcaa gtagtgacaa ccagctctga 4980 agaattagca ggattggagt tcactgaaac cactttctac tgcactacac tagctgcagc 5040 agtcactgaa aatcctgcca gaactttcat ctccttaacc agacacactc agagactcac 5100 cattggcgaa ctaaatgcca ggattgactc ctagagctga cctcactgac acctacaaga 5160 taattgctat tgcttttttg ttgtcagctt gcatttactt ccaaaacagc cattaccaac 5220 ctgttgctgg agataatctg catagattgc catttggtgg ccagtatcaa gacggcacca 5280 agaagatatc atattttcct cagcaacaat catactttca ctccggtaac aaattaaatg 5340 tcctcatact catcttcatt cttacattgg gtatcgtcct caccaataaa tttagtttta 5400 gcgttagccg tactactcac cagcattctt gctacaatac acattctgca gccaacacaa 5460 caccaccatt gtcaggtcat cattgacgga gctgccatag ttgttactaa ttgtgaaaac 5520 acgcctgaag ttctaaaagc aatcaacttc gccccttgga acgggttaag ttttcctagt 5580 gtttgaaagt taactttgag cacttcacaa ttaagctaac aattcactaa tcatgactga 5640 caatacccca gttgctgcta cttctggttc ccctccaact gctcaagatg ctggtgccaa 5700 agcccctgct gacttttcaa atcctaatac agctcctagc ctcagtgatt tgaagaaagt 5760 caagtatgtg tccacagtca cttcagtggc aacaccaact gaaatagaag cccttggaaa 5820 gatcttcacc gccatgggac tggctgctaa tgaaactgga cccgctatgt gggatctagc 5880 gcgtgcttat gctgatgtcc aaagttcaaa atccgcacaa ctcataggtg ccaccccttc 5940 aaatccagca ctctcacgcc gcgcacttgc tgcccaattt gatcgtatta acatcacacc 6000 caggcagttc tgcatgtatt ttgctaaagt tgtctggaac attctgctag acagcaatat 6060 cccaccagca aactgggcca agcttggtta ccaagaagac acaaaatttg ctgctttcga 6120 tttcttcgat ggagtcacca atccagcaag tttgcaacca gctgacggcc tcatccggca 6180 acccaatgaa aaggagcttg ctgctcactc agttgctaag tatggtgcac tagccaggca 6240 gaaaatttcc actggcaact acataaccac acttggagag gtcacacgtg gacacatggg 6300 tggagctaac accatgtacg caattgatgc acccccagaa ctttaaaaca ctcgaaactt 6360 aattagagtg gggttttcta tagtttattt tcccaataaa ttgcttttgt aatttaaaaa 6420 aaaaaaaaaa aaaaaaaaaa a 6441 //