ID FJ940223; SV 1; linear; genomic RNA; STD; VRL; 6420 BP. XX AC FJ940223; XX DT 26-MAY-2009 (Rel. 100, Created) DT 26-MAY-2009 (Rel. 100, Last updated, Version 1) XX DE Pepino mosaic virus strain EU-tomato, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RA Van der Vlugt R.A.A., Cuperus C., Vink J., Stijger I.C.M.M., Lesemann D.E., RA Verhoeven J.Th.J., Roenhorst J.W.; RT "Identifcation and characterization of Pepino mosaic potexvirus in tomato"; RL Bull. OEPP 32:503-508(2002). XX RN [2] RP 1-6420 RA Van der Vlugt R.A.A., Van Raaij H.M.G., Dullemans A.M.; RT ; RL Submitted (16-APR-2009) to the INSDC. RL Biointeractions & Plant Health, Plant Research International, RL Droevendaalsesteeg 1, Wageningen, Gelderland 6708 PB, The Netherlands XX DR MD5; 1e214ad0071f591e17fdb956263eaec2. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6420 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /strain="EU-tomato" FT /mol_type="genomic RNA" FT /country="Netherlands" FT /collection_date="1999" FT /note="type isolate of EU-tomato strain of Pepino mosaic FT virus acronym: PepMV" FT /db_xref="taxon:112229" FT 5'UTR 1..86 FT CDS 87..4406 FT /codon_start=1 FT /product="polymerase protein" FT /db_xref="GOA:C4PFK2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C4PFK2" FT /protein_id="ACR24263.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVDTRIAYISDSLHFMEPADVTHLFD FT RCQNLKTLMATVVLPVEAIHRQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLE FT WLKYSRFIGQDPLTGLKYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPRHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT VVNYFTYVSQLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVITTHTAIGQAISNAAATYKERMQLTQLVKKGTISLADFEQREPEIT FT YTEFEPETRPQVDCVTNYNNAVKNLGLSALDEQPQCSSSNSHIPCNEISLAMTDDDNAA FT AIHEIESLLSEPIIAPQLPALPHKTWASYASDTSSMKNREIENIIAELEISRKENNVQQ FT TTHDYHAVSDTAQNSGGLPWKAWIPLLNAHGFKGDQLQYSPDGKVIQPIQDINNKTPRS FT EYPSSIPADLVTTLRNIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCSQSKEWKESFA FT FKMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLC FT KLPMEHIKTFEKAMIQPGFPVVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVY FT HESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASNA FT LQKCKVPILVPSQMKKSAMQDIGHKSMTYAGCQGLTAQRVQILLDNHTQHCSDRVLYTC FT LSRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDTYRDEKTEMLNSKPADDSPAEPEA FT PLTHFPVSNGNNLEKLASALPEKFARELYDKHHGYSNTIQTENPVVQLFQHQQAKDETL FT FWATIEARLSITTPEANLREFVLKKDVGDILFFNYHNVMCLPADPVDFEPRTWEICAAE FT VKNTYLAKPMANLINAASRQSPDFDANKISLFLKSQWVKKVEKLGAVKSKPGQTIAAFM FT QQTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDNLNQFVKQGWNFNRTAQTNDFTAF FT DQSQDGAMLQFEVMKAKFFNIPADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANT FT ECSIAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLTSKTLFPKQVKG FT DYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHNY FT LTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT CDS 4432..5136 FT /codon_start=1 FT /product="TGB1 protein" FT /db_xref="GOA:Q8B084" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q8B084" FT /protein_id="ACR24264.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNARSNS" FT CDS 5117..5488 FT /codon_start=1 FT /product="TBG2 protein" FT /db_xref="GOA:Q8JJH7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8JJH7" FT /protein_id="ACR24265.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT CDS 5340..5594 FT /codon_start=1 FT /product="TGB3 protein" FT /db_xref="GOA:Q8B083" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8B083" FT /protein_id="ACR24266.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT CDS 5633..6346 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8JJF2" FT /protein_id="ACR24267.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" FT 3'UTR 6347..6410 FT polyA_site 6411 XX SQ Sequence 6420 BP; 2067 A; 1463 C; 1170 G; 1720 T; 0 other; gaaaacaaaa caaataaaca aatatacaaa gttaaactaa cacaacataa ccacgtggaa 60 aaacagcgaa agcactttac cacattatgt ctcgtgtcag aaatactttg gaaaagatca 120 gagacccaca agtacagtcc agcatttgtg aagctgccta tcaacatgtt cgacctgtac 180 ttaaagaatc tctaatcaat tgtccttacg cgcttaatga ttatgaagca gacacccttg 240 agaatcttgg tgtcacaatt aacccccatg caatccaaac acacacacat gccgcagcca 300 aagtagtcga aaatcgtatg cttgaaattg ttggacatca cttgcctaaa gatgaaaaag 360 taactttcat cttcctcaaa cgtagcaagc tgcgttacat gagaagagct gctgtgcata 420 aagatgtctt tgtcaatcat aacattgaac caaaagactt cttcaggtat gatgaagagt 480 ctacatcaac cagcttttcc gttgatacga gaatcgcata catttcagat tctctacact 540 ttatggaacc tgctgatgtg actcacttgt ttgaccgttg ccaaaacctt aaaacattga 600 tggcaactgt tgtactacct gtggaagcta tacacagaca gacatctcta ttccctgcga 660 tttactccat taactacaat gaagaaggct ttgagtatat cccaggatca cacggtggtg 720 gggcatattt ccacaaatat gaaaccctag aatggctcaa atactctaga ttcattggac 780 aagatccatt gactggttta aaatacacca ttacgattca aatggtggag agtcttggtg 840 ccaaccacct tttcctcttc caaagaggaa actttgagac gccgctatac aggacgtttc 900 aaaagaatag ttttgtgaca ttcccaaata tattccatcc ccgacacgtc aatgccacaa 960 aacctatgcc tagatcaagg gccatacagc tgtacttata tgtgaaatca gtaaataaag 1020 ttacgcaaag agatatattt gccaaggtta gacaactgat ttccactgct gagctagaat 1080 tgtatgaccc tgatgaactc acgcatgttg taaattattt cacatatgtg tcacaactgt 1140 catctatcaa tgattatgac aacatgctca aatccagttt cttcaaaaaa ctggttgcac 1200 ccatgcaaca cgactggagg tgcatgattg aattcttccg gggaaagagt gacttcaatc 1260 aactgctcac agctcttcaa tggaaagatt tttcctatac tattaagact gaagagcttg 1320 taattactac acacactgct ataggacaag caataagcaa tgcagctgcc acatataaag 1380 aaagaatgca gctgactcaa ttggtcaaaa aaggtacaat atccttagca gattttgaac 1440 agagagaacc tgaaataact tacactgagt ttgagcctga aactaggccc caagtggact 1500 gcgttactaa ttataataat gcagttaaaa atttaggtct ttctgcactt gatgaacagc 1560 cccaatgttc atcttctaac agtcatatac cctgcaatga aatatcctta gcaatgactg 1620 atgacgacaa tgctgcggcc attcatgaaa ttgaatctct attgtctgaa ccgataatag 1680 ctcctcaact cccagcattg ccacacaaga catgggccag ttatgcttca gacacttcat 1740 ccatgaagaa ccgtgagatt gagaacataa ttgctgagct tgaaatctca cggaaggaaa 1800 ataatgtgca gcaaactact catgattacc atgctgtttc tgatactgct caaaactctg 1860 gaggtctccc atggaaagca tggattccac ttctgaatgc acacggcttt aagggagacc 1920 aacttcaata cagtcctgat ggcaaagtga ttcagccaat tcaggacatc aataacaaaa 1980 caccaagatc tgagtaccca tccagtattc ctgcagatct tgtaactaca ctgcgaaaca 2040 ttaaaagagc agtgtatgcc attcctatta gccatcgaag ggcaagtgct tacagctctg 2100 atatcaaaaa caataggacc ggcaaattac tctgttccca atcaaaagaa tggaaggaaa 2160 gttttgcttt caaaatgcaa catgaagaca tcgttaaatc tggagtagtc attcatggct 2220 gtggcggctc tggaaaatca caagcattac aaaactttct cagaactctt ggcgactcta 2280 atgactgctg cacagtggtt gtgccaactg ttgaactcag aaatgattgg gtgaacaaat 2340 tgtgtaagct acccatggaa cacattaaaa catttgaaaa agcaatgatt caaccaggat 2400 tcccagttgt tatctttgat gactacacta aattgccacc tggttacatt gaagcctatt 2460 tgttccacca tgccaacact gaacttttca ttcttactgg agactcgcgg caaagtgtat 2520 atcatgagtc caacaatgaa gcatacattg cctcattaga tgaagccgtc gcttattatg 2580 ctaactactg tggattttac ctaaatgcta cacacagaaa tgttcgcagt ttggccaata 2640 agctaggtgt ttacagtgag aaagaaggtc acctcaaaat tacctttgcc tcaaatgctc 2700 tacaaaagtg caaagtgcca attttggtgc cctctcaaat gaagaagagt gctatgcaag 2760 acatagggca caaatccatg acctacgctg ggtgtcaagg gcttactgca cagagagtcc 2820 aaattttgct tgacaaccac acacaacact gctcagacag ggtgctgtac acttgtctct 2880 ccagagctgt ggattccatc cactttatca atacaggccc aaacaattct gaattttggg 2940 acaagcttga ggcaacacca tacctcaaag catttattga tacttacaga gatgagaaaa 3000 cagaaatgct caattctaag cctgctgatg acagtcccgc tgagcctgaa gctccattga 3060 ctcactttcc agtgtcaaac ggcaataact tggaaaagtt agcttcagcg cttcctgaaa 3120 aatttgcaag agagttatat gataaacacc atggatactc taatacaatc caaactgaaa 3180 atccagtggt gcaacttttc cagcatcaac aagccaaaga tgaaacactt ttctgggcaa 3240 caatagaagc tagactttct attacaactc cggaagccaa cttacgagaa tttgtgctaa 3300 agaaagatgt tggagatatc ttgtttttca attaccacaa tgtcatgtgc ttacctgccg 3360 acccagtgga tttcgagcca agaacatggg aaatatgtgc tgctgaagtt aaaaatacat 3420 acttagccaa accaatggct aacttgatca atgctgctag cagacaatct cctgatttcg 3480 acgctaacaa aatttccctg ttcctaaaat ctcaatgggt caagaaagtg gaaaaattag 3540 gtgctgtcaa gtcaaagcct ggccagacca ttgcagcttt catgcaacaa acagtgatgt 3600 tgtatgggac catggccaga tacctcagaa agatgagaca aagatttcaa ccaaaacata 3660 ttttcatcaa ttgtgaaaca acaactgata atctgaacca atttgttaaa caaggttgga 3720 attttaacag aacagctcag acaaatgatt tcacagcttt tgaccaatca caagatggtg 3780 caatgcttca atttgaagtc atgaaggcaa aattcttcaa tatccctgcc gacatcattg 3840 aaggatacat caacatcaaa ttgaacgcca aaattttcct tggcacattg tccattatga 3900 ggttgtctgg tgaaggtcca acttttgatg ccaacacaga atgttcaata gcatatactg 3960 ctacaagata ccatcttgat tctacagtca agcaggttta tgctggagat gatatggcat 4020 tagatggagt tgtccaagaa aaaccctctt ttaaaaaact acagaacaag cttaaactca 4080 cctcaaagac actatttcca aaacaggtta aaggtgatta tgctgaattc tgtggttgga 4140 ctttcactcc tggtggtatc attaaaaacc ctttgaaaat gcatgcttcc attatgttgc 4200 aagaggcaat cggcaattta cacactgctg ccagatcata cgccattgac atgaagcatt 4260 cataccaaat gggtgatgag ctgcacaatt acttaacacc agatgaagct gaacaacact 4320 tccttgctgt tcggaagttg cacaagttac accaaggaga agcaatgaga cttggtgaaa 4380 agagccctcc aaaagcaaca cattgagggg ttaagttttc cccagttcga aatggaaaga 4440 tcaactctga ttaatttact tcaattgcac cacttcgagc caaaactcag tgttgaagga 4500 atcatagttg tgcacggaat tgcaggcact gggaaaacca ctttacttag gactttattt 4560 tctgcttacc ctagcttagt tataggttca cctaggcctt gctatttaga taaacaaaac 4620 aaaatttcac aagtttgctt atcttgcttt cccaataccc attgtgatat tgtcgatgag 4680 tatcatttgc tagaaagttt tccagaacca aaattggcta tctttggtga cccctgtcaa 4740 tgcacataca ttgagagact tagagtccca cattacactt ccttcagaac tcatagattt 4800 ggaaagtcaa ctgctgagat tttgaacaaa ctgtttgacc ttaatatagt ctcagttaag 4860 aaagaagacg acatcgttga attctttaac ccttttgaag ttgaccccac tgagcatatc 4920 tctgcctctg aagaagaagt cttggacttt gtttctgacc aagtggtgac cactagctca 4980 gaggaactag caggacttga gtttgcagaa acaactttct actgcacaac attggccgca 5040 gctgttgctg aaaatcctgc taagactttc atctctctga ctagacacac ccacaaactc 5100 accattgggg aactaaatgc caggtctaac tcctagagct gacctcactg acacatacaa 5160 aatcattgcc attgctttct tgttgtcagc ttgcatttac ttccaaaata gccactacca 5220 acctgttgct ggagacaact tgcaccgttt gccttttggt ggccaatatc aagacggcac 5280 caaaaagata tcttattttc cacaacagca gtcatacttt cattctggaa acaaattaaa 5340 tgtcctcata cttatcttca ttctcacatt gggtattgtc ctcaccaata aatttagttt 5400 tagctttagt cgtactactc accagcattc ttgctataac acacattcag caaccaacaa 5460 tacacaacca ttgtcaggtc atcattgacg gtgctgcaat agtcataaca aattgtgaga 5520 acacaccaga agtgcttaaa gcaatcaact tctccccttg gaacgggtta agttttccta 5580 aatttgaaaa ttaatattga gtgttcacaa aaatcaactt caataaacaa tcatgcctga 5640 cacaacacct gttgctgcca cttcaagtgc accacccaca gccaaagatg ctggtgccaa 5700 agctccttct gacttctcaa atcccaatac agctcctagt ctcagtgatt tgaagaaagt 5760 caagtatgtc tccaccgtga cctccgtggc cacaccagct gaaattgaag ccctaggcaa 5820 aatcttcacc gctatgggcc ttgccgccaa tgagactggt ccggccatgt gggatctagc 5880 tcgtgcatat gctgatgtgc agagttctaa atcggcacag ctgattggag ctaccccttc 5940 caaccctgca ctatcacgcc gagcccttgc tgctcagttt gatcgaatca atataacccc 6000 caggcaattt tgcatgtact ttgccaaagt tgtttggaac atacttctcg acagcaacat 6060 tccaccagca aattgggcca aacttggtta ccaagaagat acaaaatttg ctgcatttga 6120 cttcttcgat ggagtcacca accctgccag cctgcagcct gctgatggtc ttatcaggca 6180 gccaaatgag aaagaactag ctgctcactc cgtagctaag tacggcgcct tggctaggca 6240 aaagatctcc acaggtaatt atattaccac acttggagaa gtcacacgtg gacacatggg 6300 aggagctaac accatgtacg cgatagacgc accccctgaa ctttaaacac tcgaaactta 6360 atcagagtgg ggttttctac agtttatttt cctaattatt tctttgaaat aaaaaaaaaa 6420 //