ID FJ931537; SV 1; circular; genomic DNA; STD; VRL; 2756 BP. XX AC FJ931537; XX DT 05-JUL-2009 (Rel. 101, Created) DT 05-JUL-2009 (Rel. 101, Last updated, Version 1) XX DE Tomato leaf curl Palampur virus isolate Varanasi segment DNA-A, complete DE sequence. XX KW . XX OS Tomato leaf curl Palampur virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RA Jaiswal N., Saritha R.K., Dutta D., Rai M., Singh M., Dubey R.S.; RT "Varaiability of begomoviruses infecting pumpkin in North India"; RL Unpublished. XX RN [2] RP 1-2756 RA Jaiswal N., Saritha R.K., Dutta D., Rai M., Singh M., Dubey R.S.; RT ; RL Submitted (15-APR-2009) to the INSDC. RL Virology, Indian Institute of Vegetable Research, Varanasi, Uttar Pradesh RL 221305, India XX DR MD5; 72b0b3b9003d4f31a6abba2fbe38a5dd. DR EuropePMC; PMC3550709; 23637491. DR EuropePMC; PMC3723865; 28324587. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Tomato leaf curl Palampur virus" FT /segment="DNA-A" FT /isolate="Varanasi" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="pumpkin" FT /collection_date="May-2008" FT /db_xref="taxon:526476" FT CDS 120..485 FT /codon_start=1 FT /product="AV2" FT /note="pre-coat protein" FT /db_xref="GOA:C6GH55" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C6GH55" FT /protein_id="ACS91330.1" FT /translation="MWDPLLHEFPESVHGLRCMLAVKYLKEIEKTYSPDTIGYDLVRDL FT ISVVRARNYGEASSRYLHFNSRIESTPSSELRQPVCCPCSCPYCPRHKGKGMGEQTHEP FT ETKILQDVSKLGRAQGL" FT CDS 280..1050 FT /codon_start=1 FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:C6GH56" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C6GH56" FT /protein_id="ACS91331.1" FT /translation="MVKRPADIYISTPASKARRRLNFDSPYAVRAAVPIARATKAREWV FT NRPMNRKPRFYRMYRSSDVPRGCEGPCKVQSFESRHDVSHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGAPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLKKWHSTVTGGTYASKEQALVKRFIKVNNYVVYNQQEAGKYENH FT TENALMLYMACTHPSNPVYATLKIRIYFYDSVTN" FT CDS complement(310..795) FT /codon_start=1 FT /product="AC5" FT /note="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:C6GH57" FT /protein_id="ACS91332.1" FT /translation="MHILHSCSARFVVEHIKNLAKILRRTSRSTITDQKEHNTIRVILG FT LDILVHPDLTQNVDGLHTESLSDAMCETGSTGNVANTHDLTNMGDIVPGFKRLHLTWAF FT TAPGHVRASIHPVKSWFPVHGSVHPFPCLCGAGNRDSCTDSIRAVEVQTTACFRCGS" FT CDS complement(1047..1457) FT /codon_start=1 FT /product="AC3" FT /note="replication enhancer protein" FT /db_xref="GOA:C6GH58" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C6GH58" FT /protein_id="ACS91333.1" FT /translation="MITDSRTGEYITADRAESGVYIWDVPNPLYFKILKHDERPCLTNH FT DIITVQIQFNHNLRKALGLHKCFLTFQIWTGLRPQTGRFLRVFKTQVLKYLDMLGVVGI FT NNVIRAAYHVLDNVLERTLDVWATYDVKLNTY" FT CDS complement(1177..1596) FT /codon_start=1 FT /product="AC2" FT /note="transcriptional activator" FT /db_xref="GOA:C6GH59" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C6GH59" FT /protein_id="ACS91334.1" FT /translation="MQSSLHSRDHSIPVAKTSLHKKKKKNIRRRRVDLQCGCSYYISIN FT CHDHGFTHRGIHHCGSSREWRVYLGRSKSPVFQDFETRRETLPHEPRHYNSPNTVQPQP FT EESTGASQVFSNIPDLDGLTPSDWAFLESFQNPGP" FT CDS complement(1499..2602) FT /codon_start=1 FT /product="AC1" FT /note="replication initiator protein" FT /db_xref="GOA:C6GH60" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C6GH60" FT /protein_id="ACS91335.1" FT /translation="MAPPNRFRINAKNYFLTYPKCSLTKEEALSQLQNLETPTSKKFIK FT ICRELHEDGSPHIHVLIQFEGKFQCKNNRFFDLVAPSRSAHFHPNIQGAKSASDVKTYI FT DKDGDVLEWGVFQIDGRSARGGQQTANDAYAQAINTGNKEDALKVLKELAPKDYVLQFH FT NLMTNLDRIFPSRVEVYRSPFNVSSFDRVPPELVDWVSSNLRCSAARPFSAALPIRPIG FT LVLEGDSRTGKTMWARSLGPHNYLCGHLDLNPRVYNNDALYNVIDDVDPHYLKHFKEFM FT GAQRDWQSNTKYGKPMMIKGGIPTIFLCNKGPQSSYKEFLDEEKNAALKQWALKNAVFI FT TLEGPLYSGSENIATQEEEEEHPQETC" FT CDS complement(2269..2445) FT /codon_start=1 FT /product="AC4" FT /note="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C6GH61" FT /protein_id="ACS91336.1" FT /translation="MGLRISMFSSNLKENSSAKITDSSTWLPQVGQHISIRTFRELNQR FT QMSKHTSTKTETF" XX SQ Sequence 2756 BP; 739 A; 599 C; 600 G; 818 T; 0 other; accgaatggc cgcggtgcct tttgtgtggg tccagaacca atgaaattcg agatacatgg 60 cttatttaat gcgtggggac caataaatag acttgctcac caagcttgga tctacaaaca 120 tgtgggatcc attattgcac gaatttcctg aaagcgttca tggtcttagg tgcatgctag 180 ctgtaaaata tctcaaagag atagaaaaga cctattctcc tgacacaatc ggatacgatc 240 ttgttcgtga cctaatctct gtcgtccgtg ccagaaacta tggtgaagcg tccagcagat 300 atctacattt caactcccgc atcgaaagca cgccgtcgtc tgaacttcga cagcccgtat 360 gctgtccgtg cagctgtccc tattgcccgc gccacaaagg caagggaatg ggtgaacaga 420 cccatgaacc ggaaaccaag attttacagg atgtatcgaa gctcggacgt gcccaggggc 480 tgtgaaggcc catgtaaggt gcaatctttt gaatccaggc acgatgtctc ccatattggt 540 aaggtcatgt gtattagcga cgttacccgt ggaaccggtc tcacacatcg cgtcggaaag 600 cgattctgtg tgaagtccgt ctacgttctg ggtaagatct ggatggacga gaatatcaag 660 accaagaatc acacgaatag tgttatgttc tttttggtcc gtgatcgtcg acctactggt 720 gcgcctcaag attttggcga ggtttttaat atgttcgaca acgaacctag cactgcaact 780 gtgaagaata tgcatcgtga tcgatatcaa gttctcaaaa aatggcattc gactgtgacg 840 ggaggaacat acgcgtcgaa ggaacaagca ttagttaaac gttttattaa agttaataat 900 tacgttgtat ataatcaaca agaggccggc aagtatgaaa atcatactga aaatgcatta 960 atgttgtata tggcctgtac tcatccatca aatcctgtat atgctacttt aaaaatccgg 1020 atctattttt atgattcggt aacaaattaa tatgtattaa gttttacatc atatgttgcc 1080 catacatcaa gtgttctttc caatacattg tccaatacat gataagctgc tcttattaca 1140 ttattaattc caacaacacc taacatatcc aggtacttaa ggacctgggt tttgaaaact 1200 ctcaagaaac gcccagtctg agggcgtaag cccgtccaga tctggaatgt tagaaaacac 1260 ttgtgaagcc ccagtgcttt cctcaggttg tggttgaact gtatttggac tgttataatg 1320 tcgtggttcg tgaggcaagg tctctcgtcg tgtttcaaaa tcttgaaata caggggattt 1380 ggaacgtccc agatatacac gccactctct gctcgatccg cagtgatgta ttcccctgtg 1440 cgtgaatccg tgatcatggc agttgatcga tatgtaatac gaacaaccac actgcaaatc 1500 aacacgtctc ctgcggatgt tcttcttctt cttcttgtgt agcgatgttt tcgctaccgg 1560 aatagagtgg tccctcgagt gtaatgaaga ctgcattctt caatgcccac tgcttcagtg 1620 ctgcattctt ttcttcgtcc aagaattctt tatagctgct ttgtggtcct ttattgcaca 1680 agaagatagt gggaatgccg cctttaatca tcatcggctt tccgtatttt gtgttgcttt 1740 gccagtcacg ctgggccccc atgaattctt taaaatgctt tagatagtgg ggatcaacgt 1800 catcaatgac gttgtataga gcgtcgttat tgtaaaccct agggtttaga tccaagtgac 1860 cgcacaagta attgtggggt cccaaactac gcgcccacat tgttttgccc gtacgactat 1920 cgccctccaa gactaaccct atgggtctaa ttgggagcgc agcggaaaaa ggccgcgcag 1980 cggaacacct caaatttgac gacacccaat cgacgagttc tggcggaact ctgtcgaagg 2040 acgaaacatt aaatggcgaa cgataaactt cgactcgtga cggaaaaatc cgatctaaat 2100 tcgtcattaa attgtgaaac tgcaacacat aatcctttgg tgctaattct tttagcacct 2160 ttaatgcgtc ttctttattt ccagtattaa ttgcttgtgc gtatgcatcg tttgctgttt 2220 gttgaccacc acgagcagat cgcccatcga tctgaaaaac accccactct agaacgtctc 2280 cgtctttgtc gatgtatgtt ttgacatctg acgctgattt agctccctga atgttcggat 2340 ggaaatgtgc tgaccgactt ggggcaacca agtcgaagaa tctgttattt ttgcactgga 2400 attttccttc aaattggatg agaacatgga tatgcggaga cccatcttcg tgaagctctc 2460 tgcagatttt gatgaatttc tttgatgtcg gggtttctag gttttgtaat tgggaaagtg 2520 cctcttcttt agttagagag cactttggat atgtaaggaa atagtttttg gcatttattc 2580 tgaaacgatt tggcggagcc ataaacctcg tatttccaac cggtgtctct caacttcttg 2640 tattatattg gtgtctgggg tcctatatat acataagacc ctaaatggca taattgtaat 2700 tttagagata aaattacttt aattcaaacc cctatagcgg ccattcgtat aatatt 2756 //