ID FJ915122; SV 1; linear; mRNA; STD; VRL; 6463 BP. XX AC FJ915122; XX DT 10-SEP-2009 (Rel. 102, Created) DT 07-SEP-2010 (Rel. 106, Last updated, Version 3) XX DE Blackberry virus S polyprotein mRNA, complete cds. XX KW . XX OS Blackberry virus S OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6463 RX DOI; 10.1007/s00705-009-0510-x. RX PUBMED; 19784756. RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N.; RT "Identification and molecular characterization of a marafivirus in Rubus RT spp"; RL Arch. Virol. 154(11):1729-1735(2009). XX RN [2] RP 1-6463 RA Sabanadzovic S., Abou Ghanem-Sabanadzovic N.; RT ; RL Submitted (13-APR-2009) to the INSDC. RL Entomology & Plant Pathology, Mississippi State University, 100 Twelve RL Lane, Mississippi State, MS 39762, USA XX DR MD5; c1723ad5fd3e19cc9d22fdd5eb817b6e. XX FH Key Location/Qualifiers FH FT source 1..6463 FT /organism="Blackberry virus S" FT /host="Rubus canadensis" FT /isolate="GSM-8" FT /mol_type="mRNA" FT /country="USA" FT /db_xref="taxon:670883" FT CDS 195..6302 FT /codon_start=1 FT /product="polyprotein" FT /note="contains motifs of methyltransferase, endopeptidase, FT helicase, RdRP and 23K and 21K coat proteins" FT /db_xref="GOA:C8YZ25" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C8YZ25" FT /protein_id="ACV53023.1" FT /translation="MERSNSNLFASTSACFSLAIPISPLDFSPNAEAESLLPLQGAGFK FT DVIEALAPTSHRDTISSALLETVVDPFRSSLQRYPWSVPTHHQTFLQNCGIDASGFGFK FT SHPHPVHKILETNLIHNTWSCLASTDSAVMFMKPSKFAKLQAAQPHFTELHNYRLVAKD FT STRYPVTSSHVPNIETIFMHDTIMYYTPAQVLDLFLQSPKLQKLYASLVVPPESDFTSI FT TLYPELYRFRFDGHSLVYELEQNPAHNYTQPKSALVWLKTTTIIGPDFSLTVSILDSQG FT PLHSLLIQRGEPPLHSRHDTAEFRTPPAILLPAPSSLNQDVRHRLVPKKVYDAVFLYVR FT TVRTLRVTDPAGFIRTQSSKAEHSWVTSFAWDNLAHFALQTASHRPRTTYYLFSSALAR FT LSHWCRNHQLALSWASVVAISPAAALSSLSVSKFLRSELNSLAIFRRWIKAPPHFLFAP FT KAPFLSMSFRALRTGPLLFANTGFQTRLFPTAAQNFCSANPLLASFFPVKPLHRGAFLA FT SLLAASVPVALLLVRQFVGPDSPQSMHDAYADLFHPADWRLIFNRKPLFASPEPFLPIT FT TVPAPVDLPQIESIAIPAPSPAPPSPTSLAPTPIPPVTSTLDPAPASASAPAATPPAIA FT APAPAPEPQAEALSLLIPSEHQPAAPPPIPELLPAAGQLQLESSGVVSNLTPAAPEPAA FT PEPSPLQADSSARGPVQLFSELFPGSYIGTTGAFNSRYRASGRAPTPYPAGTDCLLVTI FT EQATSISRRDLWETLVTNLPDCLLAPCEISKHGLSTDHFAVLAFFYSLRVTFLTSHGPV FT DLGMSDATTNFRIDHQPESKDLMGHFSLHQDSKPVPTLNGGTGSELATAATRFNLDGCL FT LPFNTVHTFVTAPSRAKNLISNMKNGFDGVLANIDPHHTSTARDRLLCLDGIIDVAKPR FT RVRLFHIAGFAGCGKSYPIARLLKTPLFREFKVAVPTVELRAEWKDLLKIRPGAQWRLS FT TWESSLLKSARILVIDEVYKMPRGYVDLAVHADPTIELVILLGDPLQGVYHSTHPSSTN FT SRLSPETHYLSKYIDFYCLWSHRIPQDVAKFFGVHSTNLAPGFSKWVPNLSPSSKILTN FT SQNSMKTLVDCGFASVTIASSQGSTYPGATNILLDRNSALLSHSNSLVALTRSKKGVVF FT TGDRKMLEEGPTSNLLFSRYFTGKVVSLAGLFPSELPKCPHLTVPLTSRSVKLSGAGLY FT DHAIPFRSASAPMIKSSVTSDVILDPVRPFLGDGDLNAPQISTHFLPETRRPLHFDIPS FT GKPSSDSPASAEPTVPVHEPVYPGETFENLAAHFLPCHDPEDREIHFRGQLSNQFPHIN FT RPFELACQSSSLLAAVHSERDDPTLLPASIPKRLRFRPSSAPYRLTAKDEVLGSLLYEG FT LCRAYHRNSFTVLPFNETLYLECIALNEFAQLSSKTQSVIMANSKRSDPDWRYSAVRIF FT SKAQHKVNENSIFGNWKACQTLALMHDAVVLLLGPVKKYQRMFDAQDRPAHLYVHAGNT FT PAQMSSWCQNHLTDTVHLANDYTAFVQSQHGEAVVLERKKMERLSIPQALIDLHVFLKT FT NVETQFGPLTCMRLTGEPGTYDDNSDYNLAVINLEYSASHVPTMISGDDSLLDFEPPRR FT PEWSALEPLLALRFKKERDRYATFCGYYVGKAGAVRSPIALFAKLMIAVDDGSLGDKLI FT SYLAEFAVGHSLGDPFWTLLPLEAVLFQSACFDFFCRRAPPALKISLKLGEVSESIMAR FT LGRGLNWASSAVYSMLSSAQRRALLTSSRQGRSLPDNPEVSKLQGELLQSFQFVPQPSM FT NNSLLLPLFGGLSPSLAAHPMPGPNVTSQVGPAPPNDDRVDRQPSLPLAPRVAEVSPLH FT AHIDYPFQWEVGTYSGDKAAFVSDDLSASKTLKTLTAGYRHAEILSAEVDFVPLAPSFS FT KPISVGAVWTIASISPASAHEQSYYGGRLLTLGGPVLMSSTTRIPLDVSRINPVIKSSV FT SYSDTPRISYTVYSAAGTANTALISVIIRGIVRLSGPSGNTVA" XX SQ Sequence 6463 BP; 1156 A; 2466 C; 1286 G; 1555 T; 0 other; gacacagccc gtttgttctc ttccttactg cacacttgtc cggtaagttt tttgtgcacc 60 tttgtatcct gcctgaactt tcgcgcccgc acagcccgtt tgttctcttc cttactgcac 120 acttgtccgg taagtttttt gtgcaccttt aactcctctc tcgcaaagtg ccgctaggtc 180 actttacgcc taccatggaa cgctccaact ccaacttatt cgcctccacc tcggcttgct 240 tctcgcttgc catccctatc tcccccctcg acttttcgcc caacgccgaa gccgagtctt 300 tactcccgct ccaaggagcc ggtttcaaag acgtcattga ggctctcgcg cccacctccc 360 atcgtgacac tatttcctcc gccctcctcg aaacagtcgt tgacccattt cgctcctcac 420 tccagcgtta tccatggtct gtccccactc accatcaaac attcctccag aactgcggca 480 ttgatgcctc cggttttggc ttcaaatccc acccccaccc tgttcacaag attctggaga 540 ccaacctcat ccacaacacc tggtcttgcc tcgcctccac cgactccgcc gtcatgttca 600 tgaaaccatc caaattcgcc aagctccagg cagcccaacc ccacttcacc gagcttcaca 660 actaccgtct cgttgccaag gactccaccc gctaccccgt aacctcttcc catgtgccaa 720 acatcgagac catatttatg cacgacacca tcatgtacta caccccggct caggtcctag 780 acctcttcct ccagagcccc aagcttcaaa agctgtacgc ctccctcgtc gtgcccccgg 840 agtcagattt cacctccatc accctgtacc cggagttgta tcgcttccgg ttcgatggcc 900 acagtcttgt ttatgagctg gagcaaaatc ccgcccacaa ctacacccag ccaaagtcag 960 ctcttgtctg gctcaagacc accaccatca ttggacccga tttctccctc accgtctcca 1020 tcttggactc tcaaggtcct ctccactctc ttctgattca acgtggagaa cctccgctcc 1080 attcccgcca cgataccgcc gaattccgca ctccccccgc catccttctc cccgctccgt 1140 cgtcgcttaa ccaggatgtc cgacacaggc tcgtgcctaa gaaagtctac gacgccgtct 1200 tcctctacgt gcgcaccgtc cgcaccctcc gcgtcacaga ccctgctgga ttcatcagaa 1260 cccagagctc caaagctgaa cattcatggg tcacctcctt cgcctgggac aacctagccc 1320 atttcgccct tcaaaccgcc tcacatcgcc ctcgcaccac ctactaccta ttcagctcag 1380 ctcttgcccg cctctcccac tggtgtcgca accaccaact cgccttgagc tgggcctctg 1440 tcgttgccat ctcacctgca gccgctcttt cctccctgtc cgtttccaag ttcctgcgca 1500 gcgagctgaa ttccctcgca atcttccgcc gatggattaa agcccccccg cacttcttgt 1560 tcgccccgaa agccccgttt ctctccatga gcttccgggc tcttcgcact ggccctctgc 1620 tcttcgccaa caccggcttt cagactaggc tcttccccac cgcagcccag aacttttgct 1680 ccgccaaccc tcttctcgcc agctttttcc ctgtcaagcc tctccatcgc ggtgctttcc 1740 tagcttccct cctcgccgcc agcgtgcccg tcgctctcct ccttgtccgg cagttcgtgg 1800 gtcccgactc accacaaagc atgcacgacg cctatgccga tcttttccac ccagctgact 1860 ggcgtctgat ctttaaccgc aagccgctgt tcgcctcccc ggagcctttc cttcccatca 1920 caaccgttcc agcccctgtc gatctgcccc agatcgaatc catcgccatc ccagccccgt 1980 ccccagctcc gcccagccca acctcccttg ccccaactcc catcccgccg gtcacttcca 2040 ccctcgatcc cgctccggct tcagcttccg ctccggctgc cactcctccc gccatcgcag 2100 ctccagcccc cgctccagag ccccaagccg aggctttgag cctcctcatc ccctccgagc 2160 atcagcctgc cgccccgcct ccaatccctg aactgcttcc cgccgccggt cagctccagc 2220 ttgagtcctc gggtgttgtc tccaacctca ccccagccgc gccagaacct gccgcaccag 2280 agccctcccc tcttcaagct gattccagtg cgcgtggtcc cgtgcagctc ttctcagagc 2340 ttttccccgg ctcctacatt ggcaccaccg gagccttcaa ctctcgctac cgcgcctccg 2400 gtcgagcccc cactccatat cctgccggca ctgactgcct gttggtgaca atcgagcaag 2460 ctaccagcat ctccagacgc gatctgtggg aaaccctcgt caccaatctt cctgactgtc 2520 ttcttgctcc gtgcgaaatt tccaagcatg gactctccac cgaccatttc gccgttctcg 2580 ccttcttcta ctccctgcga gtcaccttcc tgacctcaca tggccctgtc gacctcggga 2640 tgtccgatgc caccaccaac tttcgcattg accaccagcc ggaatccaaa gacctcatgg 2700 gtcacttctc cctgcaccaa gattctaagc cggtccccac cctcaatggc gggactggct 2760 ccgagctggc cactgccgcc acacgcttca acttggatgg ttgcctgctc cctttcaaca 2820 ccgttcatac cttcgtcact gccccttcac gcgccaaaaa cctcatcagc aacatgaaga 2880 atggtttcga cggggttctc gccaacatcg acccacatca cacctccact gcccgtgatc 2940 gcctgctttg cctcgatggc atcattgacg ttgccaagcc ccgccgtgtt cgactgtttc 3000 acatcgcagg ctttgcaggc tgcggcaagt cctacccaat cgctcgcctc ctcaagaccc 3060 cacttttccg tgaatttaag gtggctgtgc cgacggtcga gcttcgcgcc gagtggaagg 3120 acctgctgaa gatccgacct ggcgctcaat ggcgtctctc cacctgggag tcttctctgc 3180 tcaaatcggc ccgcattctg gtcatagatg aggtctacaa gatgccaagg gggtatgtcg 3240 acctcgctgt ccacgcagat ccaacaatcg agctcgtcat tttgctcgga gacccactgc 3300 aaggcgtgta ccactccacc catccctctt caaccaattc ccgtctgtcc cctgagaccc 3360 actatctctc caagtacata gacttctact gtctgtggtc ccaccgcatt ccgcaagacg 3420 tggccaagtt tttcggcgtc cactccacca acctagcccc aggcttcagc aagtgggtcc 3480 caaacctgtc cccaagctca aagatcctca caaactccca aaactctatg aaaactctgg 3540 tggattgcgg cttcgcttct gtgacaatcg cttcaagtca ggggtccacc taccctgggg 3600 ccactaacat tcttcttgac cgcaactccg ctctgctgag ccattctaat tcgcttgttg 3660 ctctcacccg ctccaagaaa ggggtcgtct tcactgggga tcggaaaatg cttgaagagg 3720 gccccacttc caatctcctc ttctcccgct acttcactgg caaggtcgtc tctctcgccg 3780 gcctctttcc ttctgagctt cctaagtgcc cccacctcac cgtccctctg acctccagat 3840 ccgtcaaact ctctggtgca ggcctctatg accacgccat tccttttcgc tcggcctctg 3900 cacccatgat caaaagttcc gtcacatccg acgtcattct ggaccctgtc cggccctttc 3960 tcggagacgg ggacctcaac gccccgcaaa tatcgaccca ctttctgccc gagacccgca 4020 ggcccttgca ttttgacatt ccttcgggca agccttcctc cgactccccc gcttcagccg 4080 agccaactgt tcccgtccat gagccggtgt accctgggga gacctttgaa aatctcgccg 4140 cccattttct tccgtgccat gaccccgagg atcgtgaaat ccatttccgt gggcagctct 4200 ccaatcagtt tcctcacatc aaccggccct tcgagctcgc ctgccagtcc tcctctctcc 4260 tcgccgccgt tcactctgag cgtgatgacc ccactcttct cccggcgtcc atcccgaagc 4320 gtctccggtt ccgcccttcc tctgcgcctt acagactcac tgccaaggat gaggtcctgg 4380 gttcgctcct ttatgaaggt ctgtgtcgcg cttaccatcg caactcattc accgtcctgc 4440 ccttcaatga gaccctgtac ctcgaatgca tcgccctcaa tgagttcgcc cagcttagct 4500 cgaagaccca gtctgtcatt atggctaact ccaaaagatc ggaccctgat tggcgttact 4560 cggccgttcg catcttcagc aaggctcaac acaaagtgaa cgagaactcc atctttggaa 4620 actggaaggc ctgccagacc ctagctctga tgcacgacgc cgtcgtcctc cttctgggcc 4680 cagtcaagaa gtaccagcgg atgtttgatg cccaagatcg acctgctcac ctgtacgtgc 4740 acgctggcaa cactccagct cagatgtcct cctggtgcca gaaccacctc actgacacgg 4800 tccacctcgc caatgactac accgcttttg ttcaatctca acacggcgag gccgtcgttc 4860 tcgagcgcaa gaaaatggag cgtctctcga tccctcaagc gctcatcgat ctccacgtct 4920 tcctcaaaac caatgtcgag actcagttcg ggccgctcac ttgcatgcgc ttgactggcg 4980 agccaggcac ttacgacgac aactccgact acaacctggc cgtcatcaat ctggagtatt 5040 ccgcctctca cgtcccaacc atgatctcgg gcgatgactc cctgcttgac tttgagccgc 5100 ctcgccggcc tgagtggtcc gccctcgagc ctcttctcgc cctgcgcttc aagaaagagc 5160 gcgatcgcta tgccactttc tgcggctatt acgtcggcaa ggctggcgcc gtccgctctc 5220 ccatcgctct attcgccaaa ctcatgattg ccgtcgatga tggctcactg ggcgacaaac 5280 tgatttctta cttagccgag tttgcagtcg gtcactccct tggggaccct ttctggaccc 5340 ttctcccgct cgaggctgtg ctctttcaat ccgcttgctt cgacttcttt tgccgccgtg 5400 cgcctcctgc tctcaaaatc tccctcaagc ttggagaagt ctctgagtcg atcatggctc 5460 gtctcggccg cggtctcaac tgggcatcat ccgccgtcta ctcaatgctt tcctccgctc 5520 agcgccgcgc tctcctcact tcttcccgcc agggccgttc acttcctgac aatcccgaag 5580 tctcgaagtt acagggtgaa ttgcttcagt cttttcaatt tgtgcctcaa ccttctatga 5640 acaattctct cctgcttcct ctcttcggtg gtctctctcc ctctctcgct gctcacccca 5700 tgccaggccc caatgtcacc tcccaggtcg gtcccgctcc tcccaatgat gatcgcgtgg 5760 atcgccagcc tagtcttcct ctggctcctc gtgtcgcgga ggtctccccg ctccacgcgc 5820 atatcgacta cccattccaa tgggaagtcg ggacctactc cggagacaaa gccgcgtttg 5880 tgagcgatga tctctcagcc agcaaaaccc tcaagacgct caccgccggc taccgccatg 5940 ctgaaatcct ctccgctgag gttgacttcg tcccgctcgc cccctcgttc tccaagccca 6000 tctctgtcgg cgccgtctgg accatcgcct ccatctcccc cgcctccgct cacgagcagt 6060 cctattacgg cggtcgactc ctcacgctcg gcggtcccgt gctcatgtcc tccaccaccc 6120 gcattcctct tgacgtgagc cgcatcaacc ccgtcatcaa atcttcggtc tcctattcgg 6180 acacgccgag gatctcctac accgtctact ccgccgccgg aactgccaac accgccctca 6240 tctccgtcat catccgcgga attgtccgcc tgtccggccc ttccggcaac accgtcgcct 6300 gatctcatca ggatgcgaga aggacactcg cccgagcctc agagccggta tgtcgttaaa 6360 cccaagcttt cctttctttt ccttttcctt tccctccaga gcttcccgtt aatctagcaa 6420 tagtcagggt tccaggtccc tcagacctcg gcctcttttc ctt 6463 //