Dbfetch
ID FJ907327; SV 1; linear; genomic RNA; STD; VRL; 6228 BP. XX AC FJ907327; XX DT 22-AUG-2009 (Rel. 101, Created) DT 22-AUG-2009 (Rel. 101, Last updated, Version 1) XX DE Japanese holly fern mottle virus isolate DI segment RNA1 DE replicase-associated polyprotein and p12 genes, complete cds. XX KW . XX OS Japanese holly fern mottle virus OC Viruses; Riboviria; dsRNA viruses. XX RN [1] RP 1-6228 RX DOI; 10.1099/vir.0.012674-0. RX PUBMED; 19570959. RA Valverde R.A., Sabanadzovic S.; RT "A novel plant virus with unique properties infecting Japanese holly fern"; RL J. Gen. Virol. 90(Pt 10):2542-2549(2009). XX RN [2] RP 1-6228 RA Sabanadzovic S., Valverde R.A.; RT ; RL Submitted (10-APR-2009) to the INSDC. RL Entomology & Plant Pathology, Mississippi State University, 100 Twelve RL Lane, Mississippi State, MS 39762, USA XX DR MD5; b062749245723f794918b07cbcae10bb. XX FH Key Location/Qualifiers FH FT source 1..6228 FT /organism="Japanese holly fern mottle virus" FT /segment="RNA1" FT /isolate="DI" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:659660" FT CDS 76..5805 FT /codon_start=1 FT /product="replicase-associated polyprotein" FT /note="viral replicase" FT /db_xref="GOA:C7T4Z4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C7T4Z4" FT /protein_id="ACT67464.1" FT /translation="MDKLLSLFTIPSVFLSALTDTGGFCYLNCFDVSLYPGRIFDILAA FT QFAMLSTAMSVKRHVGEYKFLLTGKELKEIVIRHGNMRIRSFRVVYSTSERCVCHIDKS FT TGALIDAAWLNDNDLFGADVPQFNLGSLPQVKAVDYLEPGSLQFEQVRGSVIRRAVADD FT DSNVSASLRADYLEKLRQAELVRQSLRKVRVVRSISPDQLATLRSLFPGFEFEYTPRYD FT GPHNMAAVIRTAETLEAVLSFPKDEPLIDIGGDFFFHVRNGFTHVHCCAPILDSRDDER FT FSKRCMHLQKWVIDKQVSAYSSMSRRVKATLKEIPNLELLCDRLREFNDACRTPDDNGM FT DCSMFCHRTFQSSFETVEDSSSVPFEDAVVSGSFAVSPWDVETQVGRRLAGGKFPPKKT FT FDDLADVAVNWVTEGVNSVVSSLKKERSGDISCDSSCVEEGAPEGVSVASASVASDESV FT RRTVSCGRRARFGIMIHSSYDMLPVPVCQGMVEHDMTMVKGCMIAEPAMLVQTKGYLPI FT LECNWRLVTPLGVPLTCHPCKLGDRFYRLSTTGDRPLSCPGFDDVFIEYHFQDDSTMAY FT RHKFSTVFEWMTCHIVECDGARFCLERDKFRDGSLYFTITRLRFPSLRSELNFSCAWLS FT SMASHYVLKVPMFRSFRYKGFLRHSYFDEYVVSKTLVDTVFSACLRSLYTFEPKDHRKN FT FQVVITYLASHSQSIIINGTAVTRREPLPAEWLNPIAMAIYYQLCVVKDDESQALLNID FT NCQITKIFHFSNFVSALKDIVTSFLKFVLPSKLFEKFSDISNVGDFINNNMRVSTVYEY FT VASVSSIRHTSDFSDVVVHDVEQFREVNVAALNWADEAEVADLMPADLKEESAVCAEVS FT FDPSMVDEYTVSTAPKAVDPVGPLPPVSSDAKSIVEASVLEYLDLLSQDYNNLWNKMHS FT FLRNVCADVRLLPNYCMDPSDWGVYCLRKGEGWLLKPDHFNHAVAFCAAGFISVDVEKG FT VPRPTAKASSKYHDKIGDYLVFCSDSKLINGFYIYDKYKSRSFSLNATSFNMVDGVAGC FT GKTYEITNFVRNCDKKCLVVSPIKTSIEDLRENLPSVDRRYLRTIDSYLLNPNVEVDVL FT VVDEAYSTMPGAVMLVASCCKAKELRVYGDTEQIPYAIRVPTFEQRFPFLGDLVKWKVS FT LREDTRRCPQDVVEAVNLMGLYKKKKFRSLSKVTSSMSLQEVHSVNDIPLIKGALYISQ FT TQKDVAMLMTRWKKILGEKRDKGKGKKPLVTVSTLEEYLTTTVHGAQGSTYTDVVYFRL FT SKNSCDLYEMSRCYYSLVAVTRHTGQFTYCSVVPDDPKDVVAKLCKLSRGSSVANADIP FT GEELIVDAPNLVVCDVPVVVKPTRISDRALEIVEMNNPSCSHHMPVGHVDLDVKIPHLN FT DEPGVSGLAAIGDLIEAFYPGNTAVDTEIQQDAIEFSDLSLSLDRCRVDLSRRSSVVAP FT GIHFSPVLKTGALERVRPSQTMSILAYESRNANVPLTSENIDIENLSTVAVEKFFSECV FT DESRLSNLSPFVVGVAADAAQQYLDVVGDKIPKPSNLSFASCNKFSHMVKQTRKPCSDT FT SVQTEFKRPATITYHGKDITQVASPVFRQLTDRLLAVLMPNICVPICDNHDMAQWVANR FT FSSIGVYKSIEIDISQMDKSQMELHQLIQDKVFLRLGADPEFIFKWKEAHRLCHMAEAS FT VGFAFTTSWQRRTGDAATLLGNSVVTLVVNNYVLGFKNFVAVGCVGDDFSGLYTKSLSF FT DSNKYPKMFNFSVKVFESTSGFYLCSRWVLEVNGTFLWCPDIPRLAQRLSRKDIPQDES FT LLREVFTGMKDATASLFKIGVADQLALVMAVKYRKEVGTILPAILAMKQSLSSFSNFKQ FT LFELSDPSLDCVLKLQQDVVSSAKSNWRKSKSRFR" FT CDS 5838..6158 FT /codon_start=1 FT /product="p12" FT /db_xref="UniProtKB/TrEMBL:C7T4Z5" FT /protein_id="ACT67465.1" FT /translation="MACWMCSDMLSLKASPVVDGWFEVPSPKPCRGFRSCAEHRLFISS FT THLPCKLSSLSQLQVEELSKALSISPLWLSVSPSFAKHLHLHYFGISELPHLEKYLCVK FT DR" XX SQ Sequence 6228 BP; 1427 A; 1209 C; 1550 G; 2042 T; 0 other; gataaaagct cttatctgtt gtttatacag ttttgggcta gtccgtcttt gtgattccgt 60 tgctagcgtg ataagatgga taaacttttg agtcttttca ctattccctc ggtgttcctg 120 tcagcgctga ccgataccgg tggcttctgc tacttgaact gtttcgatgt gtctttatat 180 ccgggaagga tattcgacat cttggcagct cagtttgcta tgttgtccac cgctatgtct 240 gtcaagaggc atgtcgggga atataagttc ttgcttacgg gcaaggaact taaggagatt 300 gttattcgac atggcaatat gcgcattaga tcgttcaggg ttgtttattc gacttctgag 360 cgatgtgtgt gtcatattga caagtcgacg ggcgctctta ttgatgctgc ctggttgaat 420 gacaatgatc tttttggggc tgatgttccc caatttaatc tgggttcttt acctcaggtt 480 aaggctgtgg actacctgga gccgggtagt ttgcaatttg agcaagtcag gggctctgtt 540 attcgcagag ccgttgctga cgatgactca aatgtcagcg cttctttacg ggctgactat 600 ttagagaaac ttcgacaagc tgagttggtt cgtcaaagtt tgcgcaaggt gcgagttgtc 660 aggtctatta gtcctgatca attggctact ttgcgatctc tatttcccgg gtttgagttt 720 gagtacacac ccaggtatga cggtccgcac aatatggcgg ccgttattag gactgctgag 780 acgcttgagg ctgtcttgtc gtttcctaag gatgaaccgt tgattgacat cggaggagat 840 tttttctttc atgtcaggaa cggattcact catgttcatt gttgtgctcc tattttggat 900 tcgagggacg atgaacggtt ctctaaacgt tgcatgcacc ttcagaaatg ggtgattgat 960 aagcaggtgt ctgcttattc atccatgtcg cgtagggtta aggcaacgtt gaaggagatt 1020 cccaacctag aacttttgtg tgataggttg agggagttca atgacgcttg tcgaactccc 1080 gatgacaatg gaatggattg ttccatgttt tgtcatagaa cttttcaaag ttcttttgaa 1140 acagttgaag attcttcttc ggttcctttt gaggatgccg ttgtttcggg ttcttttgct 1200 gtttctccct gggacgtgga gactcaagtc ggtaggcgtc tggcgggtgg taagtttcca 1260 cctaagaaga cgttcgacga cttggccgac gttgccgtta actgggttac cgagggtgtt 1320 aactcagttg tttcttcttt gaagaaagag cgaagtggtg atatttcgtg tgattcctct 1380 tgtgttgagg aaggagctcc tgagggagtc tctgtggcgt ctgcttccgt tgcctctgat 1440 gagtctgttc gccgtacggt ttcttgcggt cgacgggctc gttttggtat tatgatccac 1500 tcatcctatg acatgctacc tgttccggta tgtcagggta tggtggagca tgatatgact 1560 atggtgaagg gttgtatgat tgccgaaccg gctatgctag ttcaaacgaa gggttacctt 1620 cctattctgg agtgtaactg gcgtttggtg acgcctttgg gcgttccgct tacttgccat 1680 ccgtgtaagc tgggtgatag gttttatcgt ttatctacta ccggtgatag gcctctgtct 1740 tgccctgggt ttgacgacgt ttttattgaa tatcattttc aggatgacag tactatggcc 1800 tataggcata agttttccac tgtatttgag tggatgactt gtcacattgt agaatgtgat 1860 ggagctagat tttgcttgga gagggacaaa tttcgtgatg ggagtcttta ttttaccatc 1920 actcggttgc gattcccttc tcttaggtcg gagctcaact ttagttgtgc ttggttgagt 1980 tctatggcct cccactacgt tctcaaagtg cccatgtttc ggtctttccg gtataaggga 2040 tttctgcggc acagttactt tgatgaatat gtagtctcta aaacgttggt tgacacagtt 2100 ttttcagcgt gtcttaggag cttgtatacg ttcgagccca aagatcaccg gaaaaacttt 2160 caggttgtca taacgtattt agctagtcac agccagtcca ttattattaa tggtacggca 2220 gtgactaggc gggaaccatt gccagctgag tggttgaatc ccatagctat ggcaatttat 2280 tatcaattgt gcgtcgtgaa ggacgatgag tcccaagctt tgcttaatat tgataattgt 2340 caaattacta aaattttcca ttttagtaat tttgtttctg ctcttaagga tatagttact 2400 tctttcctta agtttgtatt accgtccaag ttgtttgaga agttttccga catttccaat 2460 gtaggtgact tcataaacaa taacatgagg gtaagtacgg tttatgagta cgtagctagt 2520 gtgtcgtcta tacgacatac ctcagacttt tccgacgttg ttgtgcacga cgtggaacag 2580 tttcgtgagg taaatgttgc tgcgttaaat tgggcggatg aggcggaagt agctgacctc 2640 atgccggctg atttaaaaga ggaatcagcg gtttgtgctg aagtctcttt tgatccttct 2700 atggtggatg agtacactgt gtctacagct ccaaaggctg tggatcccgt tggacctctt 2760 cctcctgtga gctccgacgc taagtcgatt gttgaggctt ctgttttgga gtatttggat 2820 cttttatccc aggattataa taatctctgg aataaaatgc attcctttct taggaatgtt 2880 tgcgctgatg ttcgtctgct tccgaattat tgtatggacc cttctgattg gggtgtgtac 2940 tgcttgcgca aaggtgaggg ctggttgctt aagccggatc actttaacca tgctgtggct 3000 ttttgtgcag ctggttttat tagcgttgac gtggaaaagg gtgttccacg tccaactgct 3060 aaagcttcgt caaagtacca tgataagatt ggtgattatc ttgtcttttg ctctgactcg 3120 aagcttataa atggatttta tatatacgat aagtataaat ctcgttcctt ttcactgaat 3180 gccacgtctt tcaatatggt tgacggtgtg gcaggttgtg gaaagactta cgagattact 3240 aattttgtta ggaattgcga taagaagtgt cttgtcgtgt ctcctattaa aactagtatt 3300 gaagatcttc gagagaacct tcctagtgtc gatcgtagat atcttcggac catcgactcc 3360 tatttgttga atcccaacgt ggaggtggat gtgttagtgg tagatgaagc ttattctacc 3420 atgccgggag ctgtcatgtt ggtggcttcc tgttgtaagg ctaaggaatt acgtgtttat 3480 ggggacactg aacaaattcc ttatgccata cgcgttccca cttttgaaca aaggtttccc 3540 tttttgggag acttagtcaa gtggaaagtg tctttacgtg aggacacgcg gcgatgtcca 3600 caggatgtgg tggaggccgt taatctgatg ggtctttaca agaagaagaa gtttcggtct 3660 ttgagtaaag tcacgtccag tatgtcgttg caagaagttc attctgttaa cgacataccc 3720 cttataaaag gggctcttta catttctcaa acccaaaagg acgtggccat gctgatgacc 3780 aggtggaaga agattttggg tgagaaacgg gacaaaggga aagggaagaa acccttggtg 3840 acggttagta ctttggagga gtatttgact accaccgttc atggtgctca aggtagcaca 3900 tatacagatg ttgtatattt tcggttatcg aaaaatagtt gtgacttgta tgagatgtct 3960 agatgttact acagtttggt agcagtgact cgacatactg gtcagtttac ttactgttct 4020 gttgtaccag atgatccaaa ggatgttgtt gccaagttgt gcaagttgtc acgaggatcg 4080 tctgttgcga atgcagatat accaggtgag gagctcattg ttgatgctcc caatcttgta 4140 gtttgtgatg tgccagtggt ggtaaaaccc acacgcatct cagacagggc tctggaaatt 4200 gttgaaatga ataatccttc ttgttctcat cacatgcccg tcgggcatgt tgatttggac 4260 gttaagattc ctcatttgaa cgatgagccc ggcgtatcag ggttggccgc tataggggat 4320 cttatagagg ccttttaccc tggcaatacg gccgtcgata ctgagatcca acaagacgct 4380 atcgagttca gtgatttgtc gttgtcactc gatcgttgtc gcgttgatct tagtaggaga 4440 tcgtctgtgg ttgcgcctgg tattcacttt tctcctgtcc taaagactgg ggctcttgag 4500 agagtgagac caagtcaaac tatgtcaata ttggcttatg agagtaggaa cgctaatgtt 4560 cctctgacat ccgaaaatat tgacatagaa aatttgtcta ccgttgcggt ggaaaaattt 4620 ttctcggaat gtgtggatga gagtaggtta tctaatcttt ctccctttgt tgtgggagtt 4680 gctgccgatg ctgcgcagca atatttagac gttgtcggtg ataaaatccc gaaaccgtct 4740 aacttatcat ttgctagttg taataagttt tcgcatatgg tcaagcaaac tcgcaagcct 4800 tgttcagata cgtctgtgca gactgagttt aaaaggcccg cgactattac ttatcatggc 4860 aaagatataa cacaagtggc atcacccgtt tttcgacagc tgacagatcg tctcctggct 4920 gttttgatgc ccaatatttg tgttcccatc tgcgacaacc acgatatggc tcagtgggtt 4980 gccaatagat tttcatctat tggcgtttat aaatccattg agattgatat atcgcaaatg 5040 gataagtcgc aaatggaact tcatcaattg atccaagata aggttttctt gcgattgggt 5100 gcggatcctg agtttatatt taaatggaaa gaagctcacc gtctctgtca tatggctgag 5160 gcgagtgttg gatttgcatt taccacaagt tggcagcgtc gtacggggga cgctgccacc 5220 ttgctgggga attccgtcgt cactttagtt gtaaacaatt atgttttggg ttttaaaaac 5280 tttgtggcag tcggttgtgt cggagacgat ttttctggtt tgtacaccaa gagcttgtcg 5340 ttcgacagta ataagtaccc aaagatgttt aacttttcag ttaaagtctt tgagtccaca 5400 tctggatttt acttgtgctc ccggtgggta ctagaagtaa acgggacatt tctatggtgt 5460 cccgatatcc ctcgtctggc tcaacgtctc tcacgtaaag acattcctca ggatgagtct 5520 cttttacgag aggtgtttac cggtatgaaa gatgctactg catctctgtt taagattgga 5580 gtagcggacc agcttgcgct ggtcatggct gttaaatatc gtaaggaggt gggaacgatc 5640 ctacctgcta tattagccat gaagcaaagc ctgtcttcgt tcagcaactt caaacaattg 5700 tttgagttgt ctgatcctag tttggactgc gttttgaagt tacagcaaga tgttgtttct 5760 tctgccaagt caaattggcg taagagtaaa tctcgattca gataattctg aatttgacaa 5820 cgtcaacctt caacattatg gcttgttgga tgtgctcgga catgctttct ttgaaggctt 5880 caccagttgt agatggctgg tttgaagtcc cttcacctaa gccttgccgc ggttttcgat 5940 cgtgtgctga acatcgtctt ttcatatcct caactcattt gccttgcaag ttgagttcgt 6000 tgtcacaact tcaagttgaa gagctttcga aggctctttc tatttctcct ctttggttgt 6060 ctgtttcccc atcttttgca aaacatctac atttgcatta ttttgggatt tcggaacttc 6120 ctcatttgga gaaatatttg tgtgtgaagg accgttgatc cttcatacca cgtactgagt 6180 ttcggtacat accgtcgaag acggtattgg ggctaagccc cccccccc 6228 //